Clone Sequence Records
BS06266.3prime Sequence
639 bp (638 high quality bases) assembled on 2005-12-03
> BS06266.3prime
ATGGTCTAGAAAGCTTCTATTTGGATGAGTAAGTGGATTCGGTCTTCTTG
ATATTGAGAACGCCGTTGGAATCGGTGGCACCCTGGATGTTGGTCACCTT
CTGGTTGCCACTGGCATCGACAACGGCCACGGTCTGCTGGATTTGGGTGG
CGGGAATGGGTCCAACTCCGGAGATGTGCTGATAGCTACCGGTGCTTCCT
ACTCCGCTGTTGCTGCTGATGGAGGCTGCGCTGGTGTAGCCATTGTAGGT
GGGATAATAGTTGTCGCCTCCAGTTAAGGAGCTCTCGCCGAAACGCTCAT
CAAAGGACACACCACCAAGCACTGGAGCAGCGGCCTGCTGGGTGTAAGAG
GAGCCAGAATGACCGGAGCCATCGGCATTCTGAACGCTGTGTGAGGCGTA
GGTGAAGACGTTTCCTCCACTGGAGGACGAGGAGGATGATGACGAGGAAG
ACGAACTGGACTGACGACGCAGACGCCTCAGGAGATGGGCATTCACGGGA
TGGACATTCGACTGGTGGCCCTCCGAGTCCAAGGTGAAGAAGGCACGGGG
CAGAAACTGGCCAGCGGAAGAGGCCGAAGCGGTAGTAATCGCAAACAAAG
CGATGGCAATCACAGCGTACTTCATGTCGACTGATAACT
BS06266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10200-PB | 609 | CG10200-RB | 1..609 | 625..17 | 3045 | 100 | Minus |
CG10200-PA | 609 | CG10200-RA | 1..609 | 625..17 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 821 | CG10200-RA | 165..775 | 625..15 | 3055 | 100 | Minus |
hui-RB | 734 | CG10200-RB | 78..688 | 625..15 | 3055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14809585..14809885 | 315..15 | 1505 | 100 | Minus |
2R | 25286936 | 2R | 14809273..14809523 | 565..315 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 14808583..14808643 | 625..565 | 305 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 19:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 252..204 | 119 | 71.4 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 252..204 | 119 | 71.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 267..206 | 111 | 68.3 | Minus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 414..521 | 108 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 251..173 | 106 | 62.5 | Minus |
BS06266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:46 Download gff for
BS06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 17..625 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:00 Download gff for
BS06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 17..625 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:53 Download gff for
BS06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RB | 73..688 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:00 Download gff for
BS06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hui-RB | 73..688 | 15..634 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:00 Download gff for
BS06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14809274..14809523 | 315..564 | 100 | -> | Minus |
2R | 14808578..14808643 | 565..634 | 94 | -> | Minus |
2R | 14809586..14809885 | 15..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:53 Download gff for
BS06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10696083..10696148 | 565..634 | 94 | -> | Minus |
arm_2R | 10696779..10697028 | 315..564 | 100 | -> | Minus |
arm_2R | 10697091..10697390 | 15..314 | 100 | | Minus |
BS06266.5prime Sequence
639 bp (638 high quality bases) assembled on 2005-12-03
> BS06266.5prime
GAAGTTATCAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTG
CGATTACTACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCC
TTCTTCACCTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAA
TGCCCATCTCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGT
CATCATCCTCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCA
CACAGCGTTCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACAC
CCAGCAGGCCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTT
TCGGCGAGAGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAAT
GGCTACACCAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCAC
CGGTAGCTATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAA
TCCAGCAGACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACC
AACATCCAGGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGAC
CGAATCCACTTACTCATCCAAATAGAAGCTTTCTAGACC
BS06266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10200-PB | 609 | CG10200-RB | 1..609 | 17..625 | 3045 | 100 | Plus |
CG10200-PA | 609 | CG10200-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 821 | CG10200-RA | 165..775 | 17..627 | 3055 | 100 | Plus |
hui-RB | 734 | CG10200-RB | 78..688 | 17..627 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14809585..14809885 | 327..627 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 14809273..14809523 | 77..327 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14808583..14808643 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 13:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 390..438 | 119 | 71.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 390..438 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 375..436 | 111 | 68.3 | Plus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 228..121 | 108 | 61.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 391..469 | 106 | 62.5 | Plus |
BS06266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:47 Download gff for
BS06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:02 Download gff for
BS06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:05 Download gff for
BS06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RB | 73..688 | 8..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:19 Download gff for
BS06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hui-RB | 73..688 | 8..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:19 Download gff for
BS06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14809274..14809523 | 78..327 | 100 | -> | Plus |
2R | 14808578..14808643 | 8..77 | 94 | -> | Plus |
2R | 14809586..14809885 | 328..627 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:05 Download gff for
BS06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10696083..10696148 | 8..77 | 94 | -> | Plus |
arm_2R | 10696779..10697028 | 78..327 | 100 | -> | Plus |
arm_2R | 10697091..10697390 | 328..627 | 100 | | Plus |
BS06266.complete Sequence
641 bp (641 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635422
> BS06266.complete
GAAGTTATCAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTG
CGATTACTACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCC
TTCTTCACCTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAA
TGCCCATCTCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGT
CATCATCCTCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCA
CACAGCGTTCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACAC
CCAGCAGGCCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTT
TCGGCGAGAGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAAT
GGCTACACCAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCAC
CGGTAGCTATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAA
TCCAGCAGACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACC
AACATCCAGGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGAC
CGAATCCACTTACTCATCCAAATAGAAGCTTTCTAGACCAT
BS06266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 609 | CG10200-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
hui-RB | 609 | CG10200-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 821 | CG10200-RA | 165..775 | 17..627 | 3055 | 100 | Plus |
hui-RB | 734 | CG10200-RB | 78..688 | 17..627 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14809585..14809885 | 327..627 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 14809273..14809523 | 77..327 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14808583..14808643 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 390..438 | 119 | 71.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 390..438 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 375..436 | 111 | 68.3 | Plus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 228..121 | 108 | 61.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 391..469 | 106 | 62.5 | Plus |
BS06266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:48 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:21 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RA | 130..745 | 8..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:04 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RB | 78..680 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:48 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RA | 130..745 | 8..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:04 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hui-RB | 78..680 | 17..619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:04 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14808583..14808643 | 17..77 | 100 | -> | Plus |
2R | 14809274..14809523 | 78..327 | 100 | -> | Plus |
2R | 14809586..14809877 | 328..619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:04 Download gff for
BS06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10696088..10696148 | 17..77 | 100 | -> | Plus |
arm_2R | 10696779..10697028 | 78..327 | 100 | -> | Plus |
arm_2R | 10697091..10697382 | 328..619 | 100 | | Plus |
BS06266.pep Sequence
Translation from 16 to 624
> BS06266.pep
MKYAVIAIALFAITTASASSAGQFLPRAFFTLDSEGHQSNVHPVNAHLLR
RLRRQSSSSSSSSSSSSSSGGNVFTYASHSVQNADGSGHSGSSYTQQAAA
PVLGGVSFDERFGESSLTGGDNYYPTYNGYTSAASISSNSGVGSTGSYQH
ISGVGPIPATQIQQTVAVVDASGNQKVTNIQGATDSNGVLNIKKTESTYS
SK*
BS06266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-PA | 202 | CG10200-PA | 1..202 | 1..202 | 1010 | 100 | Plus |
hui-PB | 202 | CG10200-PB | 1..202 | 1..202 | 1010 | 100 | Plus |