Clone BS06266 Report

Search the DGRC for BS06266

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:66
Vector:pDNR-Dual
Associated Gene/Transcripthui-RA
Protein status:BS06266.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06266.3prime Sequence

639 bp (638 high quality bases) assembled on 2005-12-03

> BS06266.3prime
ATGGTCTAGAAAGCTTCTATTTGGATGAGTAAGTGGATTCGGTCTTCTTG
ATATTGAGAACGCCGTTGGAATCGGTGGCACCCTGGATGTTGGTCACCTT
CTGGTTGCCACTGGCATCGACAACGGCCACGGTCTGCTGGATTTGGGTGG
CGGGAATGGGTCCAACTCCGGAGATGTGCTGATAGCTACCGGTGCTTCCT
ACTCCGCTGTTGCTGCTGATGGAGGCTGCGCTGGTGTAGCCATTGTAGGT
GGGATAATAGTTGTCGCCTCCAGTTAAGGAGCTCTCGCCGAAACGCTCAT
CAAAGGACACACCACCAAGCACTGGAGCAGCGGCCTGCTGGGTGTAAGAG
GAGCCAGAATGACCGGAGCCATCGGCATTCTGAACGCTGTGTGAGGCGTA
GGTGAAGACGTTTCCTCCACTGGAGGACGAGGAGGATGATGACGAGGAAG
ACGAACTGGACTGACGACGCAGACGCCTCAGGAGATGGGCATTCACGGGA
TGGACATTCGACTGGTGGCCCTCCGAGTCCAAGGTGAAGAAGGCACGGGG
CAGAAACTGGCCAGCGGAAGAGGCCGAAGCGGTAGTAATCGCAAACAAAG
CGATGGCAATCACAGCGTACTTCATGTCGACTGATAACT

BS06266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10200-PB 609 CG10200-RB 1..609 625..17 3045 100 Minus
CG10200-PA 609 CG10200-RA 1..609 625..17 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
hui-RA 821 CG10200-RA 165..775 625..15 3055 100 Minus
hui-RB 734 CG10200-RB 78..688 625..15 3055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14809585..14809885 315..15 1505 100 Minus
2R 25286936 2R 14809273..14809523 565..315 1255 100 Minus
2R 25286936 2R 14808583..14808643 625..565 305 100 Minus
Blast to na_te.dros performed 2015-02-10 19:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..169 252..204 119 71.4 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9199 252..204 119 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6824 267..206 111 68.3 Minus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2169..2269 414..521 108 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2403 251..173 106 62.5 Minus

BS06266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:46 Download gff for BS06266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10200-PA 1..609 17..625 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:00 Download gff for BS06266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10200-PA 1..609 17..625 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:53 Download gff for BS06266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10200-RB 73..688 15..634 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:00 Download gff for BS06266.3prime
Subject Subject Range Query Range Percent Splice Strand
hui-RB 73..688 15..634 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:00 Download gff for BS06266.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14809274..14809523 315..564 100 -> Minus
2R 14808578..14808643 565..634 94 -> Minus
2R 14809586..14809885 15..314 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:53 Download gff for BS06266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10696083..10696148 565..634 94 -> Minus
arm_2R 10696779..10697028 315..564 100 -> Minus
arm_2R 10697091..10697390 15..314 100   Minus

BS06266.5prime Sequence

639 bp (638 high quality bases) assembled on 2005-12-03

> BS06266.5prime
GAAGTTATCAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTG
CGATTACTACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCC
TTCTTCACCTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAA
TGCCCATCTCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGT
CATCATCCTCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCA
CACAGCGTTCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACAC
CCAGCAGGCCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTT
TCGGCGAGAGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAAT
GGCTACACCAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCAC
CGGTAGCTATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAA
TCCAGCAGACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACC
AACATCCAGGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGAC
CGAATCCACTTACTCATCCAAATAGAAGCTTTCTAGACC

BS06266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10200-PB 609 CG10200-RB 1..609 17..625 3045 100 Plus
CG10200-PA 609 CG10200-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
hui-RA 821 CG10200-RA 165..775 17..627 3055 100 Plus
hui-RB 734 CG10200-RB 78..688 17..627 3055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14809585..14809885 327..627 1505 100 Plus
2R 25286936 2R 14809273..14809523 77..327 1255 100 Plus
2R 25286936 2R 14808583..14808643 17..77 305 100 Plus
Blast to na_te.dros performed 2015-02-12 13:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..169 390..438 119 71.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9199 390..438 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6824 375..436 111 68.3 Plus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2169..2269 228..121 108 61.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2403 391..469 106 62.5 Plus

BS06266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:47 Download gff for BS06266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10200-PA 1..609 17..625 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:02 Download gff for BS06266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10200-PA 1..609 17..625 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:05 Download gff for BS06266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10200-RB 73..688 8..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:19 Download gff for BS06266.5prime
Subject Subject Range Query Range Percent Splice Strand
hui-RB 73..688 8..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:19 Download gff for BS06266.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14809274..14809523 78..327 100 -> Plus
2R 14808578..14808643 8..77 94 -> Plus
2R 14809586..14809885 328..627 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:05 Download gff for BS06266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10696083..10696148 8..77 94 -> Plus
arm_2R 10696779..10697028 78..327 100 -> Plus
arm_2R 10697091..10697390 328..627 100   Plus

BS06266.complete Sequence

641 bp (641 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635422

> BS06266.complete
GAAGTTATCAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTG
CGATTACTACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCC
TTCTTCACCTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAA
TGCCCATCTCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGT
CATCATCCTCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCA
CACAGCGTTCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACAC
CCAGCAGGCCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTT
TCGGCGAGAGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAAT
GGCTACACCAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCAC
CGGTAGCTATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAA
TCCAGCAGACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACC
AACATCCAGGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGAC
CGAATCCACTTACTCATCCAAATAGAAGCTTTCTAGACCAT

BS06266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
hui-RA 609 CG10200-PA 1..609 17..625 3045 100 Plus
hui-RB 609 CG10200-PB 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
hui-RA 821 CG10200-RA 165..775 17..627 3055 100 Plus
hui-RB 734 CG10200-RB 78..688 17..627 3055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14809585..14809885 327..627 1505 100 Plus
2R 25286936 2R 14809273..14809523 77..327 1255 100 Plus
2R 25286936 2R 14808583..14808643 17..77 305 100 Plus
Blast to na_te.dros performed 2014-11-27 16:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..169 390..438 119 71.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9199 390..438 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6824 375..436 111 68.3 Plus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2169..2269 228..121 108 61.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2403 391..469 106 62.5 Plus

BS06266.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:48 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
CG10200-RA 1..609 17..625 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:21 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
CG10200-RA 130..745 8..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:04 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
CG10200-RB 78..680 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:48 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
CG10200-RA 130..745 8..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:04 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
hui-RB 78..680 17..619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:04 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14808583..14808643 17..77 100 -> Plus
2R 14809274..14809523 78..327 100 -> Plus
2R 14809586..14809877 328..619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:04 Download gff for BS06266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10696088..10696148 17..77 100 -> Plus
arm_2R 10696779..10697028 78..327 100 -> Plus
arm_2R 10697091..10697382 328..619 100   Plus

BS06266.pep Sequence

Translation from 16 to 624

> BS06266.pep
MKYAVIAIALFAITTASASSAGQFLPRAFFTLDSEGHQSNVHPVNAHLLR
RLRRQSSSSSSSSSSSSSSGGNVFTYASHSVQNADGSGHSGSSYTQQAAA
PVLGGVSFDERFGESSLTGGDNYYPTYNGYTSAASISSNSGVGSTGSYQH
ISGVGPIPATQIQQTVAVVDASGNQKVTNIQGATDSNGVLNIKKTESTYS
SK*

BS06266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
hui-PA 202 CG10200-PA 1..202 1..202 1010 100 Plus
hui-PB 202 CG10200-PB 1..202 1..202 1010 100 Plus