Clone BS06270 Report

Search the DGRC for BS06270

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG7906-RA
Protein status:BS06270.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06270.3prime Sequence

962 bp (861 high quality bases) assembled on 2005-12-03

> BS06270.3prime
ATGGTCTAGAAAGCTTTTACATCATATCCCTTTTATAGCAAGTAATGGTA
TTTTGGCATTCGGCATCGTGCACTTGGTGGAAAACATTCTTGGTGTTGAA
GCAGTTCCACTGACTCAGCTCACATTGGCCTGGAAAATTGACCACACATT
TGCCGTTGCTGGCACAAATGGACAGTGATGCTTTGGGACACTGAAAATTG
CATTTTCCCAATTTCATTTCCTCACGATGCTGGGCAATCAGTTGGGGAAT
GTGGGCGTGAACTTGGTTGACTATATTGGACACTTTATCGGGAATAACCA
GCGAGCGACCAGCCTTCGATGAACTTGGTTGGGGTGTTGTTTCGGATGGT
TCAGGATCCTCCTGATCTTCTTTTACTTCCTTTTCTTTGTCATCAACCTT
GTTGATTTCTTTATCCTTCTGGAGCTGCTCCTTTTCTCTTTGAGCTTCCT
GTTCTTTCTTTTGTTTAATGGCCTGGTTCACTGCTAATGGAATGTGTTTC
TCGGCCTGCTGCATCACCTTGGTCACATGCTGTTGAAGTTTTTGCAGCTT
TTCGGCCACATTAATGGGTTCTTGACCAGGAAGCGAGAGCACCACATGCT
CCACGGGCGGCATCACCACCTTATTCTGCACCACCGGCCTTCCGTGGTGG
ATCAGAGTACCGGTGGCCTGGTGATGGGTCACCTTCACCGGTGGATTGCC
AGCTTGCACCGACTGTATGCCAGATTGCAACGCAGGTGCAGCCGCTGGGA
CGTCGGCAAGGGGAGGGGCAAGGACATCACCAGAGTGTGCCAATGGTGGA
AGGAGATCTGGATGGGGCTTGACCACTGGCGCACCGCCCTCACTCCCACT
CCCACTCCCATGCCCATCCACAGGTCCACTCAATGTGTTCGAAACCTGAG
GTTTGTTCTTTATGTGCTGGAATACATGATTGATGTGGCTGGTTATCAGG
TTCTGGATGTGA

BS06270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 1065 CG7906-RA 120..1065 962..17 4680 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1233 CG7906-RA 164..1109 962..17 4700 99.8 Minus
CG7906-RB 1351 CG7906-RB 253..1204 962..17 4630 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237118..14237995 962..85 4360 99.8 Minus
3L 28110227 3L 14238057..14238125 85..17 345 100 Minus
Blast to na_te.dros performed 2015-02-03 13:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 759..862 466..363 123 60 Minus

BS06270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:54 Download gff for BS06270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 121..1065 17..961 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:12 Download gff for BS06270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 121..1065 17..961 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:01 Download gff for BS06270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 165..1116 9..961 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:25 Download gff for BS06270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 165..1116 9..961 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:25 Download gff for BS06270.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14237119..14237995 85..961 99 -> Minus
3L 14238058..14238132 9..84 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:01 Download gff for BS06270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14230219..14231095 85..961 99 -> Minus
arm_3L 14231158..14231232 9..84 96   Minus

BS06270.5prime Sequence

935 bp (780 high quality bases) assembled on 2005-12-03

> BS06270.5prime
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAATTGGGAAAATGCAAT
TTTCAGTGTCCAAAGCATCACTGGTCATTTGTGCC

BS06270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 1065 CG7906-RA 1..869 17..885 4345 100 Plus
CG7906-PA 1065 CG7906-RA 869..896 884..911 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RB 1351 CG7906-RB 132..1054 15..935 4535 99.6 Plus
CG7906-RA 1233 CG7906-RA 43..965 15..935 4535 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237018..14237919 36..935 4380 99.6 Plus
Blast to na_te.dros performed 2015-02-12 13:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 759..862 632..735 123 60 Plus

BS06270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:55 Download gff for BS06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 1..921 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:13 Download gff for BS06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 1..921 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:08 Download gff for BS06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..965 10..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:34:06 Download gff for BS06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..965 10..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:34:06 Download gff for BS06270.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14236762..14236789 10..38 93 -> Plus
3L 14237021..14237919 39..935 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:08 Download gff for BS06270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14229862..14229889 10..38 93 -> Plus
arm_3L 14230121..14231019 39..935 99   Plus

BS06270.complete Sequence

1097 bp (1097 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635423

> BS06270.complete
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAA
TTTTCAGTGTCCCAAAGCATCACTGTCCATTTGTGCCAGCAACGGCAAAT
GTGTGGTCAATTTTCCAGGCCAATGTGAGCTGAGTCAGTGGAACTGCTTC
AACACCAAGAATGTTTTCCACCAAGTGCACGATGCCGAATGCCAAAATAC
CATTACTTGCTATAAAAGGGATATGATGTAAAAGCTTTCTAGACCAT

BS06270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1065 CG7906-PA 1..1065 17..1081 5325 100 Plus
CG7906-RB 1071 CG7906-PB 1..1071 17..1081 5230 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1233 CG7906-RA 43..1109 15..1081 5335 100 Plus
CG7906-RB 1351 CG7906-RB 132..1204 15..1081 5240 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237018..14237995 36..1013 4890 100 Plus
3L 28110227 3L 14238057..14238125 1013..1081 345 100 Plus
Blast to na_te.dros performed 2014-11-27 13:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 759..862 632..735 123 60 Plus

BS06270.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:50 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:23 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..1116 10..1089 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:21 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 45..1107 17..1079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:50 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..1116 10..1089 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:16 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 45..1107 17..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:16 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14236768..14236789 17..38 100 -> Plus
3L 14237021..14237995 39..1013 100 -> Plus
3L 14238058..14238123 1014..1079 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:21 Download gff for BS06270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14229868..14229889 17..38 100 -> Plus
arm_3L 14230121..14231095 39..1013 100 -> Plus
arm_3L 14231158..14231223 1014..1079 100   Plus

BS06270.pep Sequence

Translation from 16 to 1080

> BS06270.pep
MKTILVLAILSLAQAAELTQTTEAATTATTGKPQQTELPIHIQNLITSHI
NHVLQHIKNKPQVSNTLSGPVDWHGSGSGSEGGAPVVKPHPDLLPPLAHS
GDVLAPPLADVPAAAPALQSGIQSVQAGNPPVKVTHHQATGTLIHHGRPV
VQNKVVMPPVEHVVLSLPGQEPINVAEKLQKLQQHVTKVMQQAEKHIPLA
VNQAIKQKKEQEAQREKEQLQKDKEINKVDDKEKEVKEDQEDPEPSETTP
QPSSSKAGRSLVIPDKVSNIVNQVHAHIPQLIAQHREEMKLGKCNFQCPK
ASLSICASNGKCVVNFPGQCELSQWNCFNTKNVFHQVHDAECQNTITCYK
RDMM*

BS06270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 354 CG7906-PA 1..354 1..354 1855 100 Plus
CG7906-PB 356 CG7906-PB 1..356 1..354 1842 99.4 Plus