Clone Sequence Records
BS06270.3prime Sequence
962 bp (861 high quality bases) assembled on 2005-12-03
> BS06270.3prime
ATGGTCTAGAAAGCTTTTACATCATATCCCTTTTATAGCAAGTAATGGTA
TTTTGGCATTCGGCATCGTGCACTTGGTGGAAAACATTCTTGGTGTTGAA
GCAGTTCCACTGACTCAGCTCACATTGGCCTGGAAAATTGACCACACATT
TGCCGTTGCTGGCACAAATGGACAGTGATGCTTTGGGACACTGAAAATTG
CATTTTCCCAATTTCATTTCCTCACGATGCTGGGCAATCAGTTGGGGAAT
GTGGGCGTGAACTTGGTTGACTATATTGGACACTTTATCGGGAATAACCA
GCGAGCGACCAGCCTTCGATGAACTTGGTTGGGGTGTTGTTTCGGATGGT
TCAGGATCCTCCTGATCTTCTTTTACTTCCTTTTCTTTGTCATCAACCTT
GTTGATTTCTTTATCCTTCTGGAGCTGCTCCTTTTCTCTTTGAGCTTCCT
GTTCTTTCTTTTGTTTAATGGCCTGGTTCACTGCTAATGGAATGTGTTTC
TCGGCCTGCTGCATCACCTTGGTCACATGCTGTTGAAGTTTTTGCAGCTT
TTCGGCCACATTAATGGGTTCTTGACCAGGAAGCGAGAGCACCACATGCT
CCACGGGCGGCATCACCACCTTATTCTGCACCACCGGCCTTCCGTGGTGG
ATCAGAGTACCGGTGGCCTGGTGATGGGTCACCTTCACCGGTGGATTGCC
AGCTTGCACCGACTGTATGCCAGATTGCAACGCAGGTGCAGCCGCTGGGA
CGTCGGCAAGGGGAGGGGCAAGGACATCACCAGAGTGTGCCAATGGTGGA
AGGAGATCTGGATGGGGCTTGACCACTGGCGCACCGCCCTCACTCCCACT
CCCACTCCCATGCCCATCCACAGGTCCACTCAATGTGTTCGAAACCTGAG
GTTTGTTCTTTATGTGCTGGAATACATGATTGATGTGGCTGGTTATCAGG
TTCTGGATGTGA
BS06270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-PA | 1065 | CG7906-RA | 120..1065 | 962..17 | 4680 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RA | 1233 | CG7906-RA | 164..1109 | 962..17 | 4700 | 99.8 | Minus |
CG7906-RB | 1351 | CG7906-RB | 253..1204 | 962..17 | 4630 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14237118..14237995 | 962..85 | 4360 | 99.8 | Minus |
3L | 28110227 | 3L | 14238057..14238125 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 13:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 759..862 | 466..363 | 123 | 60 | Minus |
BS06270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:54 Download gff for
BS06270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 121..1065 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:12 Download gff for
BS06270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 121..1065 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:01 Download gff for
BS06270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 165..1116 | 9..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:25 Download gff for
BS06270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 165..1116 | 9..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:25 Download gff for
BS06270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14237119..14237995 | 85..961 | 99 | -> | Minus |
3L | 14238058..14238132 | 9..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:01 Download gff for
BS06270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14230219..14231095 | 85..961 | 99 | -> | Minus |
arm_3L | 14231158..14231232 | 9..84 | 96 | | Minus |
BS06270.5prime Sequence
935 bp (780 high quality bases) assembled on 2005-12-03
> BS06270.5prime
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAATTGGGAAAATGCAAT
TTTCAGTGTCCAAAGCATCACTGGTCATTTGTGCC
BS06270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-PA | 1065 | CG7906-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
CG7906-PA | 1065 | CG7906-RA | 869..896 | 884..911 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RB | 1351 | CG7906-RB | 132..1054 | 15..935 | 4535 | 99.6 | Plus |
CG7906-RA | 1233 | CG7906-RA | 43..965 | 15..935 | 4535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14237018..14237919 | 36..935 | 4380 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-12 13:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 759..862 | 632..735 | 123 | 60 | Plus |
BS06270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:55 Download gff for
BS06270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:13 Download gff for
BS06270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:08 Download gff for
BS06270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..965 | 10..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:34:06 Download gff for
BS06270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..965 | 10..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:34:06 Download gff for
BS06270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14236762..14236789 | 10..38 | 93 | -> | Plus |
3L | 14237021..14237919 | 39..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:08 Download gff for
BS06270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14229862..14229889 | 10..38 | 93 | -> | Plus |
arm_3L | 14230121..14231019 | 39..935 | 99 | | Plus |
BS06270.complete Sequence
1097 bp (1097 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635423
> BS06270.complete
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAA
TTTTCAGTGTCCCAAAGCATCACTGTCCATTTGTGCCAGCAACGGCAAAT
GTGTGGTCAATTTTCCAGGCCAATGTGAGCTGAGTCAGTGGAACTGCTTC
AACACCAAGAATGTTTTCCACCAAGTGCACGATGCCGAATGCCAAAATAC
CATTACTTGCTATAAAAGGGATATGATGTAAAAGCTTTCTAGACCAT
BS06270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RA | 1065 | CG7906-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG7906-RB | 1071 | CG7906-PB | 1..1071 | 17..1081 | 5230 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RA | 1233 | CG7906-RA | 43..1109 | 15..1081 | 5335 | 100 | Plus |
CG7906-RB | 1351 | CG7906-RB | 132..1204 | 15..1081 | 5240 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14237018..14237995 | 36..1013 | 4890 | 100 | Plus |
3L | 28110227 | 3L | 14238057..14238125 | 1013..1081 | 345 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 759..862 | 632..735 | 123 | 60 | Plus |
BS06270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:50 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:23 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..1116 | 10..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:21 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 45..1107 | 17..1079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:50 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..1116 | 10..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:16 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 45..1107 | 17..1079 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:16 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14236768..14236789 | 17..38 | 100 | -> | Plus |
3L | 14237021..14237995 | 39..1013 | 100 | -> | Plus |
3L | 14238058..14238123 | 1014..1079 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:21 Download gff for
BS06270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14229868..14229889 | 17..38 | 100 | -> | Plus |
arm_3L | 14230121..14231095 | 39..1013 | 100 | -> | Plus |
arm_3L | 14231158..14231223 | 1014..1079 | 100 | | Plus |
BS06270.pep Sequence
Translation from 16 to 1080
> BS06270.pep
MKTILVLAILSLAQAAELTQTTEAATTATTGKPQQTELPIHIQNLITSHI
NHVLQHIKNKPQVSNTLSGPVDWHGSGSGSEGGAPVVKPHPDLLPPLAHS
GDVLAPPLADVPAAAPALQSGIQSVQAGNPPVKVTHHQATGTLIHHGRPV
VQNKVVMPPVEHVVLSLPGQEPINVAEKLQKLQQHVTKVMQQAEKHIPLA
VNQAIKQKKEQEAQREKEQLQKDKEINKVDDKEKEVKEDQEDPEPSETTP
QPSSSKAGRSLVIPDKVSNIVNQVHAHIPQLIAQHREEMKLGKCNFQCPK
ASLSICASNGKCVVNFPGQCELSQWNCFNTKNVFHQVHDAECQNTITCYK
RDMM*
BS06270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-PA | 354 | CG7906-PA | 1..354 | 1..354 | 1855 | 100 | Plus |
CG7906-PB | 356 | CG7906-PB | 1..356 | 1..354 | 1842 | 99.4 | Plus |