Clone Sequence Records
BS06271.3prime Sequence
918 bp (911 high quality bases) assembled on 2005-12-03
> BS06271.3prime
ATGGTCTAGAAAGCTTTCACATCTCGAAGACGAGCGATCCGGAGGCGTAG
CTAACGCTGGAGTCCTCAATGTCCTGACACTGGCTGCTCTGGGCGTACTT
GAGGAACTTGAAACTCATCTTGTCGTAGCCCTGATCCTGCAGTGCCTTCA
CGGCGCCTAGCATTACTCCGATGGGATGGCGTCCGCATATCGTATTGTTG
TACTTGCGCAAGTACTCGGTGAAGGAGTGCGGATTGAGCGACTCAATGAT
GTCCATGCCCTGCTTGTCCAGCTTCTCGATGGACTTGTGAATCGCTCCGC
AGGAGCTGTCATAGTAGGTATAGCTGAAGCGATGGCCCCAGTGGCAAAAG
TCGGAAGATATCACAAACAGATTGGTGGGGTCCATCAGATACGAGGACAG
CAGGCTGCCGTACTGCGCCTCCTGTTCGGGATTGAGCGAACCCACCAGAA
TAGGCACAATGGTGAACTGATCCTTGTAGTCCTCCATCACTTTGGCAATG
TAGGGTAAATGCATCTCGATGGAGTGTTCATCCTCGTCAGTCTTCATGTC
CATCCAAGAAAACTTTCCAGTCTTCTCAAGCTCAGAGTTGATCTGAGCAT
CAATTTTGAGATCATAGAGGGGTGTCCTGTACTTCTTCGCCACGGATAAG
GCGCAGCCACGCAGACGCACATGATGCGAGGGACCCAGTATGAAGATTCG
CTTGACGACAACTGGGCTAACTTGGCGATAGGCAAAGGCAGCGCAGGCTC
CACAGTACGTATATCCAGCATGTGGAGCAATGATGGCACGAGCCGGTCCA
TGGGACAAATCTGCGGCACCCAGCCAACGATCCAACTGTCTCGAGAGCTC
GGCGCCCGAGTCCGTGTACCAGCTGCCTGCATGGGTTGCTCTTCTGGCCG
ACATGTCGACTGATAACT
BS06271.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-PA | 888 | CG8031-RA | 1..888 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 1318 | CG8031-RA | 131..1022 | 904..13 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13008680..13009146 | 13..479 | 2335 | 100 | Plus |
3R | 32079331 | 3R | 13009382..13009494 | 592..704 | 565 | 100 | Plus |
3R | 32079331 | 3R | 13009204..13009315 | 480..591 | 560 | 100 | Plus |
3R | 32079331 | 3R | 13009689..13009771 | 774..856 | 415 | 100 | Plus |
3R | 32079331 | 3R | 13009559..13009627 | 705..773 | 345 | 100 | Plus |
3R | 32079331 | 3R | 13011131..13011180 | 855..904 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:45:06 has no hits.
BS06271.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:57 Download gff for
BS06271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..888 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:15 Download gff for
BS06271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..888 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:23 Download gff for
BS06271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..1029 | 6..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:05 Download gff for
BS06271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..1029 | 6..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:05 Download gff for
BS06271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13009382..13009494 | 592..704 | 100 | <- | Plus |
3R | 13009559..13009627 | 705..773 | 100 | <- | Plus |
3R | 13009689..13009770 | 774..855 | 100 | <- | Plus |
3R | 13011132..13011186 | 856..912 | 92 | | Plus |
3R | 13008673..13009146 | 6..479 | 99 | <- | Plus |
3R | 13009204..13009315 | 480..591 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:23 Download gff for
BS06271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8834395..8834868 | 6..479 | 99 | <- | Plus |
arm_3R | 8834926..8835037 | 480..591 | 100 | <- | Plus |
arm_3R | 8835104..8835216 | 592..704 | 100 | <- | Plus |
arm_3R | 8835281..8835349 | 705..773 | 100 | <- | Plus |
arm_3R | 8835411..8835492 | 774..855 | 100 | <- | Plus |
arm_3R | 8836854..8836908 | 856..912 | 92 | | Plus |
BS06271.5prime Sequence
808 bp (806 high quality bases) assembled on 2005-12-03
> BS06271.5prime
GAAGTTATCAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCT
GGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTG
GGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACA
TGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAG
TTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCAT
GTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACC
CCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGA
CTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCC
ATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGA
TCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGG
AGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAAT
CTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTA
TACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGC
TGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTC
ACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCAT
CGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGACA
AGATGAGT
BS06271.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-PA | 888 | CG8031-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 1318 | CG8031-RA | 131..922 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13008780..13009146 | 808..442 | 1835 | 100 | Minus |
3R | 32079331 | 3R | 13009382..13009494 | 329..217 | 565 | 100 | Minus |
3R | 32079331 | 3R | 13009204..13009315 | 441..330 | 560 | 100 | Minus |
3R | 32079331 | 3R | 13009689..13009771 | 147..65 | 415 | 100 | Minus |
3R | 32079331 | 3R | 13009559..13009627 | 216..148 | 345 | 100 | Minus |
3R | 32079331 | 3R | 13011131..13011180 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:56:50 has no hits.
BS06271.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:58 Download gff for
BS06271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:17 Download gff for
BS06271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:04 Download gff for
BS06271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..922 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:04 Download gff for
BS06271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..922 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:04 Download gff for
BS06271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13008780..13009146 | 442..808 | 100 | <- | Minus |
3R | 13009204..13009315 | 330..441 | 100 | <- | Minus |
3R | 13009382..13009494 | 217..329 | 100 | <- | Minus |
3R | 13009559..13009627 | 148..216 | 100 | <- | Minus |
3R | 13009689..13009770 | 66..147 | 100 | <- | Minus |
3R | 13011132..13011186 | 9..65 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:04 Download gff for
BS06271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8834502..8834868 | 442..808 | 100 | <- | Minus |
arm_3R | 8834926..8835037 | 330..441 | 100 | <- | Minus |
arm_3R | 8835104..8835216 | 217..329 | 100 | <- | Minus |
arm_3R | 8835281..8835349 | 148..216 | 100 | <- | Minus |
arm_3R | 8835411..8835492 | 66..147 | 100 | <- | Minus |
arm_3R | 8836854..8836908 | 9..65 | 92 | | Minus |
BS06271.complete Sequence
920 bp (920 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635424
> BS06271.complete
GAAGTTATCAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCT
GGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTG
GGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACA
TGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAG
TTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCAT
GTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACC
CCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGA
CTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCC
ATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGA
TCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGG
AGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAAT
CTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTA
TACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGC
TGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTC
ACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCAT
CGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGACA
AGATGAGTTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAGGAC
ATTGAGGACTCCAGCGTTAGCTACGCCTCCGGATCGCTCGTCTTCGAGAT
GTGAAAGCTTTCTAGACCAT
BS06271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 888 | CG8031-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 1318 | CG8031-RA | 131..1022 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13008680..13009146 | 908..442 | 2335 | 100 | Minus |
3R | 32079331 | 3R | 13009382..13009494 | 329..217 | 565 | 100 | Minus |
3R | 32079331 | 3R | 13009204..13009315 | 441..330 | 560 | 100 | Minus |
3R | 32079331 | 3R | 13009689..13009771 | 147..65 | 415 | 100 | Minus |
3R | 32079331 | 3R | 13009559..13009627 | 216..148 | 345 | 100 | Minus |
3R | 32079331 | 3R | 13011131..13011180 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:59:09 has no hits.
BS06271.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:51 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:25 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 70..974 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:42 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 131..1017 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:51 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 70..974 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:32 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 131..1017 | 17..903 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:32 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13008685..13009146 | 442..903 | 100 | <- | Minus |
3R | 13009204..13009315 | 330..441 | 100 | <- | Minus |
3R | 13009382..13009494 | 217..329 | 100 | <- | Minus |
3R | 13009559..13009627 | 148..216 | 100 | <- | Minus |
3R | 13009689..13009770 | 66..147 | 100 | <- | Minus |
3R | 13011132..13011180 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:42 Download gff for
BS06271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8834407..8834868 | 442..903 | 100 | <- | Minus |
arm_3R | 8834926..8835037 | 330..441 | 100 | <- | Minus |
arm_3R | 8835104..8835216 | 217..329 | 100 | <- | Minus |
arm_3R | 8835281..8835349 | 148..216 | 100 | <- | Minus |
arm_3R | 8835411..8835492 | 66..147 | 100 | <- | Minus |
arm_3R | 8836854..8836902 | 17..65 | 100 | | Minus |
BS06271.pep Sequence
Translation from 16 to 903
> BS06271.pep
MSARRATHAGSWYTDSGAELSRQLDRWLGAADLSHGPARAIIAPHAGYTY
CGACAAFAYRQVSPVVVKRIFILGPSHHVRLRGCALSVAKKYRTPLYDLK
IDAQINSELEKTGKFSWMDMKTDEDEHSIEMHLPYIAKVMEDYKDQFTIV
PILVGSLNPEQEAQYGSLLSSYLMDPTNLFVISSDFCHWGHRFSYTYYDS
SCGAIHKSIEKLDKQGMDIIESLNPHSFTEYLRKYNNTICGRHPIGVMLG
AVKALQDQGYDKMSFKFLKYAQSSQCQDIEDSSVSYASGSLVFEM*
BS06271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-PA | 295 | CG8031-PA | 1..295 | 1..295 | 1565 | 100 | Plus |