Clone BS06271 Report

Search the DGRC for BS06271

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG8031-RA
Protein status:BS06271.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06271.3prime Sequence

918 bp (911 high quality bases) assembled on 2005-12-03

> BS06271.3prime
ATGGTCTAGAAAGCTTTCACATCTCGAAGACGAGCGATCCGGAGGCGTAG
CTAACGCTGGAGTCCTCAATGTCCTGACACTGGCTGCTCTGGGCGTACTT
GAGGAACTTGAAACTCATCTTGTCGTAGCCCTGATCCTGCAGTGCCTTCA
CGGCGCCTAGCATTACTCCGATGGGATGGCGTCCGCATATCGTATTGTTG
TACTTGCGCAAGTACTCGGTGAAGGAGTGCGGATTGAGCGACTCAATGAT
GTCCATGCCCTGCTTGTCCAGCTTCTCGATGGACTTGTGAATCGCTCCGC
AGGAGCTGTCATAGTAGGTATAGCTGAAGCGATGGCCCCAGTGGCAAAAG
TCGGAAGATATCACAAACAGATTGGTGGGGTCCATCAGATACGAGGACAG
CAGGCTGCCGTACTGCGCCTCCTGTTCGGGATTGAGCGAACCCACCAGAA
TAGGCACAATGGTGAACTGATCCTTGTAGTCCTCCATCACTTTGGCAATG
TAGGGTAAATGCATCTCGATGGAGTGTTCATCCTCGTCAGTCTTCATGTC
CATCCAAGAAAACTTTCCAGTCTTCTCAAGCTCAGAGTTGATCTGAGCAT
CAATTTTGAGATCATAGAGGGGTGTCCTGTACTTCTTCGCCACGGATAAG
GCGCAGCCACGCAGACGCACATGATGCGAGGGACCCAGTATGAAGATTCG
CTTGACGACAACTGGGCTAACTTGGCGATAGGCAAAGGCAGCGCAGGCTC
CACAGTACGTATATCCAGCATGTGGAGCAATGATGGCACGAGCCGGTCCA
TGGGACAAATCTGCGGCACCCAGCCAACGATCCAACTGTCTCGAGAGCTC
GGCGCCCGAGTCCGTGTACCAGCTGCCTGCATGGGTTGCTCTTCTGGCCG
ACATGTCGACTGATAACT

BS06271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-PA 888 CG8031-RA 1..888 904..17 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-RA 1318 CG8031-RA 131..1022 904..13 4460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13008680..13009146 13..479 2335 100 Plus
3R 32079331 3R 13009382..13009494 592..704 565 100 Plus
3R 32079331 3R 13009204..13009315 480..591 560 100 Plus
3R 32079331 3R 13009689..13009771 774..856 415 100 Plus
3R 32079331 3R 13009559..13009627 705..773 345 100 Plus
3R 32079331 3R 13011131..13011180 855..904 250 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:45:06 has no hits.

BS06271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:57 Download gff for BS06271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-PA 1..888 17..904 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:15 Download gff for BS06271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-PA 1..888 17..904 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:23 Download gff for BS06271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 125..1029 6..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:05 Download gff for BS06271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 125..1029 6..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:05 Download gff for BS06271.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13009382..13009494 592..704 100 <- Plus
3R 13009559..13009627 705..773 100 <- Plus
3R 13009689..13009770 774..855 100 <- Plus
3R 13011132..13011186 856..912 92   Plus
3R 13008673..13009146 6..479 99 <- Plus
3R 13009204..13009315 480..591 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:23 Download gff for BS06271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8834395..8834868 6..479 99 <- Plus
arm_3R 8834926..8835037 480..591 100 <- Plus
arm_3R 8835104..8835216 592..704 100 <- Plus
arm_3R 8835281..8835349 705..773 100 <- Plus
arm_3R 8835411..8835492 774..855 100 <- Plus
arm_3R 8836854..8836908 856..912 92   Plus

BS06271.5prime Sequence

808 bp (806 high quality bases) assembled on 2005-12-03

> BS06271.5prime
GAAGTTATCAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCT
GGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTG
GGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACA
TGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAG
TTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCAT
GTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACC
CCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGA
CTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCC
ATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGA
TCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGG
AGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAAT
CTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTA
TACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGC
TGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTC
ACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCAT
CGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGACA
AGATGAGT

BS06271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-PA 888 CG8031-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-RA 1318 CG8031-RA 131..922 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13008780..13009146 808..442 1835 100 Minus
3R 32079331 3R 13009382..13009494 329..217 565 100 Minus
3R 32079331 3R 13009204..13009315 441..330 560 100 Minus
3R 32079331 3R 13009689..13009771 147..65 415 100 Minus
3R 32079331 3R 13009559..13009627 216..148 345 100 Minus
3R 32079331 3R 13011131..13011180 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:56:50 has no hits.

BS06271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:58 Download gff for BS06271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:17 Download gff for BS06271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:04 Download gff for BS06271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 125..922 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:04 Download gff for BS06271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 125..922 9..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:04 Download gff for BS06271.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13008780..13009146 442..808 100 <- Minus
3R 13009204..13009315 330..441 100 <- Minus
3R 13009382..13009494 217..329 100 <- Minus
3R 13009559..13009627 148..216 100 <- Minus
3R 13009689..13009770 66..147 100 <- Minus
3R 13011132..13011186 9..65 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:04 Download gff for BS06271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8834502..8834868 442..808 100 <- Minus
arm_3R 8834926..8835037 330..441 100 <- Minus
arm_3R 8835104..8835216 217..329 100 <- Minus
arm_3R 8835281..8835349 148..216 100 <- Minus
arm_3R 8835411..8835492 66..147 100 <- Minus
arm_3R 8836854..8836908 9..65 92   Minus

BS06271.complete Sequence

920 bp (920 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635424

> BS06271.complete
GAAGTTATCAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCT
GGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTG
GGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACA
TGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAG
TTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCAT
GTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACC
CCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGA
CTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCC
ATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGA
TCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGG
AGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAAT
CTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTA
TACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGC
TGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTC
ACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCAT
CGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGACA
AGATGAGTTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAGGAC
ATTGAGGACTCCAGCGTTAGCTACGCCTCCGGATCGCTCGTCTTCGAGAT
GTGAAAGCTTTCTAGACCAT

BS06271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-RA 888 CG8031-PA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-RA 1318 CG8031-RA 131..1022 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13008680..13009146 908..442 2335 100 Minus
3R 32079331 3R 13009382..13009494 329..217 565 100 Minus
3R 32079331 3R 13009204..13009315 441..330 560 100 Minus
3R 32079331 3R 13009689..13009771 147..65 415 100 Minus
3R 32079331 3R 13009559..13009627 216..148 345 100 Minus
3R 32079331 3R 13011131..13011180 66..17 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:59:09 has no hits.

BS06271.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:51 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:25 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 70..974 9..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:42 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 131..1017 17..903 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:51 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 70..974 9..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:32 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 131..1017 17..903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:32 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13008685..13009146 442..903 100 <- Minus
3R 13009204..13009315 330..441 100 <- Minus
3R 13009382..13009494 217..329 100 <- Minus
3R 13009559..13009627 148..216 100 <- Minus
3R 13009689..13009770 66..147 100 <- Minus
3R 13011132..13011180 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:42 Download gff for BS06271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8834407..8834868 442..903 100 <- Minus
arm_3R 8834926..8835037 330..441 100 <- Minus
arm_3R 8835104..8835216 217..329 100 <- Minus
arm_3R 8835281..8835349 148..216 100 <- Minus
arm_3R 8835411..8835492 66..147 100 <- Minus
arm_3R 8836854..8836902 17..65 100   Minus

BS06271.pep Sequence

Translation from 16 to 903

> BS06271.pep
MSARRATHAGSWYTDSGAELSRQLDRWLGAADLSHGPARAIIAPHAGYTY
CGACAAFAYRQVSPVVVKRIFILGPSHHVRLRGCALSVAKKYRTPLYDLK
IDAQINSELEKTGKFSWMDMKTDEDEHSIEMHLPYIAKVMEDYKDQFTIV
PILVGSLNPEQEAQYGSLLSSYLMDPTNLFVISSDFCHWGHRFSYTYYDS
SCGAIHKSIEKLDKQGMDIIESLNPHSFTEYLRKYNNTICGRHPIGVMLG
AVKALQDQGYDKMSFKFLKYAQSSQCQDIEDSSVSYASGSLVFEM*

BS06271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-PA 295 CG8031-PA 1..295 1..295 1565 100 Plus