Clone BS06272 Report

Search the DGRC for BS06272

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptRpS10b-RB
Protein status:BS06272.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06272.3prime Sequence

513 bp (512 high quality bases) assembled on 2005-12-03

> BS06272.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGCGATCCGCGTCCGAATCCGCCACGG
AACTCGACCTCTCCGGCACCGGGTCCAACATCGCCCTTCTTGTCCACTCC
GCTGCCGCCGGGAGCACGTCGGTAGGCGGAGCGATCCTCTCCGGTCTTGG
AGGCGTCACCGGGTCCGCGTGGGCCGCCAACGGCGGGACGGGGACGGACG
GTCTCCGAGCGGGCAGGGCGCTTCAGCGTCGAGGGCACGATCTCGGGCGG
CAGGTGGAGGTAGCTGCGCAGCTCCTCGATTCCCTCGTTGGTGAGGTACC
AGTAGTAGTGGCGCCAGGCGAACTGCTCCTTAACCAGTCCGCGCGAGTGG
AGCGACTGCATCGCCTTGATCACGTGCAAGTTGGGGATCGACTCCAGTTC
CGGGTGCTTCTGGGCATGGAAATCCTTCTTGGCCACGATCACGCCCTCCT
TGAAGAGGTACTCGTAGATCGCGACACGATGGGCCTTTGGCATAAACATG
TCGACTGATAACT

BS06272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14206-PB 483 RpS10b-RB 1..483 499..17 2415 100 Minus
CG14206-PC 483 RpS10b-RC 1..483 499..17 2415 100 Minus
CG12275-PA 492 RpS10a-RA 20..77 480..423 215 94.8 Minus
CG12275-PA 492 RpS10a-RA 169..234 331..266 155 89.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 809 CG14206-RD 168..651 499..16 2420 100 Minus
RpS10b-RC 1469 CG14206-RC 97..580 499..16 2420 100 Minus
RpS10b-RB 743 CG14206-RB 102..585 499..16 2420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19598434..19598917 499..16 2420 100 Minus
3R 32079331 3R 27652836..27653104 499..231 640 82.5 Minus
Blast to na_te.dros performed on 2015-01-30 15:04:32 has no hits.

BS06272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:59 Download gff for BS06272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 17..499 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:18 Download gff for BS06272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 17..499 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:23 Download gff for BS06272.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..585 16..509 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:23 Download gff for BS06272.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..585 16..509 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:23 Download gff for BS06272.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19598433..19598917 16..501 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:23 Download gff for BS06272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19492466..19492950 16..501 99   Minus

BS06272.5prime Sequence

513 bp (512 high quality bases) assembled on 2005-12-03

> BS06272.5prime
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACTAAA
AGCTTTCTAGACC

BS06272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14206-PB 483 RpS10b-RB 1..483 17..499 2415 100 Plus
CG14206-PC 483 RpS10b-RC 1..483 17..499 2415 100 Plus
CG12275-PA 492 RpS10a-RA 20..77 36..93 215 94.8 Plus
CG12275-PA 492 RpS10a-RA 169..234 185..250 155 89.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 809 CG14206-RD 168..651 17..500 2420 100 Plus
RpS10b-RC 1469 CG14206-RC 97..580 17..500 2420 100 Plus
RpS10b-RB 743 CG14206-RB 102..585 17..500 2420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19598434..19598917 17..500 2420 100 Plus
3R 32079331 3R 27652836..27653104 17..285 640 82.5 Plus
Blast to na_te.dros performed on 2015-02-11 18:46:07 has no hits.

BS06272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:00 Download gff for BS06272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 17..499 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:19 Download gff for BS06272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:33:46 Download gff for BS06272.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..585 7..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:52:49 Download gff for BS06272.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..585 7..500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:52:49 Download gff for BS06272.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19598433..19598917 15..500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:33:46 Download gff for BS06272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19492466..19492950 15..500 99   Plus

BS06272.complete Sequence

515 bp (515 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635425

> BS06272.complete
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACTAAA
AGCTTTCTAGACCAT

BS06272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 483 CG14206-PD 1..483 17..499 2415 100 Plus
RpS10b-RC 483 CG14206-PC 1..483 17..499 2415 100 Plus
RpS10b-RB 483 CG14206-PB 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 809 CG14206-RD 168..651 17..500 2420 100 Plus
RpS10b-RC 1469 CG14206-RC 97..580 17..500 2420 100 Plus
RpS10b-RB 743 CG14206-RB 102..585 17..500 2420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19598434..19598917 17..500 2420 100 Plus
3R 32079331 3R 27652836..27653104 17..285 640 82.5 Plus
Blast to na_te.dros performed on 2014-11-27 20:27:24 has no hits.

BS06272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:52 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RC 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:26 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..585 7..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:18 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 108..582 23..497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:53 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..585 7..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:47 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 108..582 23..497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:47 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
X 19598440..19598914 23..497 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:18 Download gff for BS06272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19492473..19492947 23..497 100   Plus

BS06272.pep Sequence

Translation from 16 to 498

> BS06272.pep
MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSL
HSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSET
VRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEF
RGGFGRGSRN*

BS06272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-PD 160 CG14206-PD 1..160 1..160 857 100 Plus
RpS10b-PC 160 CG14206-PC 1..160 1..160 857 100 Plus
RpS10b-PB 160 CG14206-PB 1..160 1..160 857 100 Plus
RpS10b-PE 160 CG14206-PE 1..160 1..160 857 100 Plus
RpS10a-PA 163 CG12275-PA 1..160 1..159 611 74.4 Plus