Clone Sequence Records
BS06272.3prime Sequence
513 bp (512 high quality bases) assembled on 2005-12-03
> BS06272.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGCGATCCGCGTCCGAATCCGCCACGG
AACTCGACCTCTCCGGCACCGGGTCCAACATCGCCCTTCTTGTCCACTCC
GCTGCCGCCGGGAGCACGTCGGTAGGCGGAGCGATCCTCTCCGGTCTTGG
AGGCGTCACCGGGTCCGCGTGGGCCGCCAACGGCGGGACGGGGACGGACG
GTCTCCGAGCGGGCAGGGCGCTTCAGCGTCGAGGGCACGATCTCGGGCGG
CAGGTGGAGGTAGCTGCGCAGCTCCTCGATTCCCTCGTTGGTGAGGTACC
AGTAGTAGTGGCGCCAGGCGAACTGCTCCTTAACCAGTCCGCGCGAGTGG
AGCGACTGCATCGCCTTGATCACGTGCAAGTTGGGGATCGACTCCAGTTC
CGGGTGCTTCTGGGCATGGAAATCCTTCTTGGCCACGATCACGCCCTCCT
TGAAGAGGTACTCGTAGATCGCGACACGATGGGCCTTTGGCATAAACATG
TCGACTGATAACT
BS06272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14206-PB | 483 | RpS10b-RB | 1..483 | 499..17 | 2415 | 100 | Minus |
CG14206-PC | 483 | RpS10b-RC | 1..483 | 499..17 | 2415 | 100 | Minus |
CG12275-PA | 492 | RpS10a-RA | 20..77 | 480..423 | 215 | 94.8 | Minus |
CG12275-PA | 492 | RpS10a-RA | 169..234 | 331..266 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 809 | CG14206-RD | 168..651 | 499..16 | 2420 | 100 | Minus |
RpS10b-RC | 1469 | CG14206-RC | 97..580 | 499..16 | 2420 | 100 | Minus |
RpS10b-RB | 743 | CG14206-RB | 102..585 | 499..16 | 2420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19598434..19598917 | 499..16 | 2420 | 100 | Minus |
3R | 32079331 | 3R | 27652836..27653104 | 499..231 | 640 | 82.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:04:32 has no hits.
BS06272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:59 Download gff for
BS06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:18 Download gff for
BS06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:23 Download gff for
BS06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..585 | 16..509 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:23 Download gff for
BS06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..585 | 16..509 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:23 Download gff for
BS06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19598433..19598917 | 16..501 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:23 Download gff for
BS06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19492466..19492950 | 16..501 | 99 | | Minus |
BS06272.5prime Sequence
513 bp (512 high quality bases) assembled on 2005-12-03
> BS06272.5prime
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACTAAA
AGCTTTCTAGACC
BS06272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14206-PB | 483 | RpS10b-RB | 1..483 | 17..499 | 2415 | 100 | Plus |
CG14206-PC | 483 | RpS10b-RC | 1..483 | 17..499 | 2415 | 100 | Plus |
CG12275-PA | 492 | RpS10a-RA | 20..77 | 36..93 | 215 | 94.8 | Plus |
CG12275-PA | 492 | RpS10a-RA | 169..234 | 185..250 | 155 | 89.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 809 | CG14206-RD | 168..651 | 17..500 | 2420 | 100 | Plus |
RpS10b-RC | 1469 | CG14206-RC | 97..580 | 17..500 | 2420 | 100 | Plus |
RpS10b-RB | 743 | CG14206-RB | 102..585 | 17..500 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19598434..19598917 | 17..500 | 2420 | 100 | Plus |
3R | 32079331 | 3R | 27652836..27653104 | 17..285 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:46:07 has no hits.
BS06272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:00 Download gff for
BS06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:19 Download gff for
BS06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:33:46 Download gff for
BS06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..585 | 7..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:52:49 Download gff for
BS06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..585 | 7..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:52:49 Download gff for
BS06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19598433..19598917 | 15..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:33:46 Download gff for
BS06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19492466..19492950 | 15..500 | 99 | | Plus |
BS06272.complete Sequence
515 bp (515 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635425
> BS06272.complete
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACTAAA
AGCTTTCTAGACCAT
BS06272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 483 | CG14206-PD | 1..483 | 17..499 | 2415 | 100 | Plus |
RpS10b-RC | 483 | CG14206-PC | 1..483 | 17..499 | 2415 | 100 | Plus |
RpS10b-RB | 483 | CG14206-PB | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 809 | CG14206-RD | 168..651 | 17..500 | 2420 | 100 | Plus |
RpS10b-RC | 1469 | CG14206-RC | 97..580 | 17..500 | 2420 | 100 | Plus |
RpS10b-RB | 743 | CG14206-RB | 102..585 | 17..500 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19598434..19598917 | 17..500 | 2420 | 100 | Plus |
3R | 32079331 | 3R | 27652836..27653104 | 17..285 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:27:24 has no hits.
BS06272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:52 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RC | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:26 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..585 | 7..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:18 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 108..582 | 23..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:53 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..585 | 7..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:47 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 108..582 | 23..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:47 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19598440..19598914 | 23..497 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:18 Download gff for
BS06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19492473..19492947 | 23..497 | 100 | | Plus |
BS06272.pep Sequence
Translation from 16 to 498
> BS06272.pep
MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSL
HSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSET
VRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEF
RGGFGRGSRN*
BS06272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-PD | 160 | CG14206-PD | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10b-PC | 160 | CG14206-PC | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10b-PB | 160 | CG14206-PB | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10b-PE | 160 | CG14206-PE | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10a-PA | 163 | CG12275-PA | 1..160 | 1..159 | 611 | 74.4 | Plus |