Clone Sequence Records
BS06276.3prime Sequence
917 bp (777 high quality bases) assembled on 2005-12-03
> BS06276.3prime
ATGGTCTAGAAAGCTTTTAGGCCCAGGGATCGGCGGAGGGATCGCAATCA
ACGACAATCGGATCGTCCTCGCTCTCACCGTCGCTGCTGGCCAGGATCAG
GTCCACGACGGTCCAGAAGTCCTTGCCCTTCAGCATCTTGTTCACTCGCG
GCACGATGGCGTTCTCAATGGTCTCGGAAATGGCGTCCTGGTTGCCATTG
ATTCCCTTTACCACGATGTTCTCCAGCTGGCTGTTGATGGCGCGGTTGAT
CTTGCCGTTGCCCATGAATCCAGTGATGTCCGAAGTCACAGACTCCAACG
AGATGGTGGTCTTCAGCGAGGTGATCTTGGCGGAACCCCACAGCATGGGA
AGCTTGTACTTCAGAGTGCCAGCAATACGCAGGTTGACCAAATCGAACAA
CAGCTCTCCGGATCCCTCGTACTCCACGGACAGACCCAACTGGCGCAGGG
CATCGATCAGCGTATCAGTGTCGTACTTCTGGGCGGTGGTATCGATGTTC
TTGAACAGAAAATCGAAGGTAATCTTGCTGGTGATCACGTTCAGCTTGAA
CTTCTGGATATTGAAGTCATTCAGACCGGCGATCTTCAGGCGGAACACAT
GGTTCAAGGTCTCGAAAATGCCCTTTTTGTAGTCTAGGTCGAATTCGTTG
ATGCGAAGAGGAGCCAGCACGGGAATGCCATACTGGGGCCATCCGCACTC
CATCTGCTTCTGGAGCTTGCGGATGAAGCGACGCGCCTGCCAGGACACAA
TAAACTGGGGGGCAACTTCAACTCCCTCCTGGGGCTCCGCGACCAGATCG
ATGTCACCATTCTGATCCGCCAGCTCCAACAGACGCTGCTCCACCTCGTT
GGGCAGAGTGCCGGCGGCACAAACGGCCACCAGGCAGGCTAAGACTACCA
GGAAACGCATGTCGACT
BS06276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-PA | 894 | CG7953-RA | 1..894 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 1154 | CG7953-RB | 37..932 | 911..16 | 4480 | 100 | Minus |
CG7953-RA | 1092 | CG7953-RA | 37..932 | 911..16 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13848250..13849001 | 767..16 | 3760 | 100 | Minus |
2L | 23513712 | 2L | 13847961..13848106 | 911..766 | 730 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 817..853 | 115 | 83.8 | Plus |
BS06276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:05 Download gff for
BS06276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..894 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:26 Download gff for
BS06276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..894 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:30 Download gff for
BS06276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 30..934 | 12..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:28 Download gff for
BS06276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 30..934 | 12..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:28 Download gff for
BS06276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847954..13848106 | 766..917 | 98 | -> | Minus |
2L | 13848252..13849003 | 12..765 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:30 Download gff for
BS06276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847954..13848106 | 766..917 | 98 | -> | Minus |
arm_2L | 13848252..13849003 | 12..765 | 99 | | Minus |
BS06276.5prime Sequence
891 bp (793 high quality bases) assembled on 2005-12-03
> BS06276.5prime
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAAG
GGCAGGACTTCTGGGACGTCGTGNACCTGATCCTGGCCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGTCGTTGATTGCGATCCCTC
BS06276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-PA | 894 | CG7953-RA | 1..875 | 17..891 | 4231 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 1154 | CG7953-RB | 37..912 | 16..891 | 4294 | 99.4 | Plus |
CG7953-RA | 1092 | CG7953-RA | 37..912 | 16..891 | 4294 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13848250..13848981 | 160..891 | 3574 | 99.2 | Plus |
2L | 23513712 | 2L | 13847961..13848106 | 16..161 | 730 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 13:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 110..74 | 115 | 83.8 | Minus |
BS06276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:05 Download gff for
BS06276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:27 Download gff for
BS06276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:02 Download gff for
BS06276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 23..912 | 2..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:40 Download gff for
BS06276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 23..912 | 2..891 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:40 Download gff for
BS06276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847947..13848106 | 2..161 | 96 | -> | Plus |
2L | 13848252..13848981 | 162..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:02 Download gff for
BS06276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847947..13848106 | 2..161 | 96 | -> | Plus |
arm_2L | 13848252..13848981 | 162..891 | 99 | | Plus |
BS06276.complete Sequence
926 bp (926 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635426
> BS06276.complete
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGG
GCAAGGACTTCTGGACCGTCGTGGACCTGATCCTGGCCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGTCGTTGATTGCGATCCCTCCGCCGATCC
CTGGGCCTAAAAGCTTTCTAGACCAT
BS06276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 894 | CG7953-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
CG7953-RA | 894 | CG7953-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 1154 | CG7953-RB | 37..932 | 16..911 | 4480 | 100 | Plus |
CG7953-RA | 1092 | CG7953-RA | 37..932 | 16..911 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13848250..13849001 | 160..911 | 3760 | 100 | Plus |
2L | 23513712 | 2L | 13847961..13848106 | 16..161 | 730 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 110..74 | 115 | 83.8 | Minus |
BS06276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:54 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:28 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 5..916 | 2..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:17 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 38..929 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:54 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 5..916 | 2..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:48 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 38..929 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:48 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847962..13848106 | 17..161 | 100 | -> | Plus |
2L | 13848252..13848998 | 162..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:17 Download gff for
BS06276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847962..13848106 | 17..161 | 100 | -> | Plus |
arm_2L | 13848252..13848998 | 162..908 | 100 | | Plus |
BS06276.pep Sequence
Translation from 16 to 909
> BS06276.pep
MRFLVVLACLVAVCAAGTLPNEVEQRLLELADQNGDIDLVAEPQEGVEVA
PQFIVSWQARRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFE
TLNHVFRLKIAGLNDFNIQKFKLNVITSKITFDFLFKNIDTTAQKYDTDT
LIDALRQLGLSVEYEGSGELLFDLVNLRIAGTLKYKLPMLWGSAKITSLK
TTISLESVTSDITGFMGNGKINRAINSQLENIVVKGINGNQDAISETIEN
AIVPRVNKMLKGKDFWTVVDLILASSDGESEDDPIVVDCDPSADPWA*
BS06276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-PB | 297 | CG7953-PB | 1..297 | 1..297 | 1521 | 100 | Plus |
CG7953-PA | 297 | CG7953-PA | 1..297 | 1..297 | 1521 | 100 | Plus |
CG7916-PA | 287 | CG7916-PA | 19..278 | 36..296 | 434 | 36.3 | Plus |
CG8997-PB | 260 | CG8997-PB | 36..260 | 63..296 | 356 | 34.5 | Plus |
CG8997-PA | 260 | CG8997-PA | 36..260 | 63..296 | 356 | 34.5 | Plus |