Clone BS06276 Report

Search the DGRC for BS06276

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG7953-RA
Protein status:BS06276.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06276.3prime Sequence

917 bp (777 high quality bases) assembled on 2005-12-03

> BS06276.3prime
ATGGTCTAGAAAGCTTTTAGGCCCAGGGATCGGCGGAGGGATCGCAATCA
ACGACAATCGGATCGTCCTCGCTCTCACCGTCGCTGCTGGCCAGGATCAG
GTCCACGACGGTCCAGAAGTCCTTGCCCTTCAGCATCTTGTTCACTCGCG
GCACGATGGCGTTCTCAATGGTCTCGGAAATGGCGTCCTGGTTGCCATTG
ATTCCCTTTACCACGATGTTCTCCAGCTGGCTGTTGATGGCGCGGTTGAT
CTTGCCGTTGCCCATGAATCCAGTGATGTCCGAAGTCACAGACTCCAACG
AGATGGTGGTCTTCAGCGAGGTGATCTTGGCGGAACCCCACAGCATGGGA
AGCTTGTACTTCAGAGTGCCAGCAATACGCAGGTTGACCAAATCGAACAA
CAGCTCTCCGGATCCCTCGTACTCCACGGACAGACCCAACTGGCGCAGGG
CATCGATCAGCGTATCAGTGTCGTACTTCTGGGCGGTGGTATCGATGTTC
TTGAACAGAAAATCGAAGGTAATCTTGCTGGTGATCACGTTCAGCTTGAA
CTTCTGGATATTGAAGTCATTCAGACCGGCGATCTTCAGGCGGAACACAT
GGTTCAAGGTCTCGAAAATGCCCTTTTTGTAGTCTAGGTCGAATTCGTTG
ATGCGAAGAGGAGCCAGCACGGGAATGCCATACTGGGGCCATCCGCACTC
CATCTGCTTCTGGAGCTTGCGGATGAAGCGACGCGCCTGCCAGGACACAA
TAAACTGGGGGGCAACTTCAACTCCCTCCTGGGGCTCCGCGACCAGATCG
ATGTCACCATTCTGATCCGCCAGCTCCAACAGACGCTGCTCCACCTCGTT
GGGCAGAGTGCCGGCGGCACAAACGGCCACCAGGCAGGCTAAGACTACCA
GGAAACGCATGTCGACT

BS06276.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-PA 894 CG7953-RA 1..894 910..17 4470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 1154 CG7953-RB 37..932 911..16 4480 100 Minus
CG7953-RA 1092 CG7953-RA 37..932 911..16 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13848250..13849001 767..16 3760 100 Minus
2L 23513712 2L 13847961..13848106 911..766 730 100 Minus
Blast to na_te.dros performed 2015-02-11 10:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1518..1551 817..853 115 83.8 Plus

BS06276.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:05 Download gff for BS06276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..894 17..910 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:26 Download gff for BS06276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..894 17..910 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:30 Download gff for BS06276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 30..934 12..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:28 Download gff for BS06276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 30..934 12..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:28 Download gff for BS06276.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13847954..13848106 766..917 98 -> Minus
2L 13848252..13849003 12..765 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:30 Download gff for BS06276.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847954..13848106 766..917 98 -> Minus
arm_2L 13848252..13849003 12..765 99   Minus

BS06276.5prime Sequence

891 bp (793 high quality bases) assembled on 2005-12-03

> BS06276.5prime
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAAG
GGCAGGACTTCTGGGACGTCGTGNACCTGATCCTGGCCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGTCGTTGATTGCGATCCCTC

BS06276.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-PA 894 CG7953-RA 1..875 17..891 4231 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 1154 CG7953-RB 37..912 16..891 4294 99.4 Plus
CG7953-RA 1092 CG7953-RA 37..912 16..891 4294 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13848250..13848981 160..891 3574 99.2 Plus
2L 23513712 2L 13847961..13848106 16..161 730 100 Plus
Blast to na_te.dros performed 2015-02-12 13:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1518..1551 110..74 115 83.8 Minus

BS06276.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:05 Download gff for BS06276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:27 Download gff for BS06276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:02 Download gff for BS06276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 23..912 2..891 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:40 Download gff for BS06276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 23..912 2..891 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:40 Download gff for BS06276.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13847947..13848106 2..161 96 -> Plus
2L 13848252..13848981 162..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:02 Download gff for BS06276.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847947..13848106 2..161 96 -> Plus
arm_2L 13848252..13848981 162..891 99   Plus

BS06276.complete Sequence

926 bp (926 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635426

> BS06276.complete
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGG
GCAAGGACTTCTGGACCGTCGTGGACCTGATCCTGGCCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGTCGTTGATTGCGATCCCTCCGCCGATCC
CTGGGCCTAAAAGCTTTCTAGACCAT

BS06276.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 894 CG7953-PB 1..894 17..910 4470 100 Plus
CG7953-RA 894 CG7953-PA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 1154 CG7953-RB 37..932 16..911 4480 100 Plus
CG7953-RA 1092 CG7953-RA 37..932 16..911 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13848250..13849001 160..911 3760 100 Plus
2L 23513712 2L 13847961..13848106 16..161 730 100 Plus
Blast to na_te.dros performed 2014-11-27 15:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1518..1551 110..74 115 83.8 Minus

BS06276.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:54 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:28 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 5..916 2..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:17 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 38..929 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:54 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 5..916 2..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:48 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 38..929 17..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:48 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13847962..13848106 17..161 100 -> Plus
2L 13848252..13848998 162..908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:17 Download gff for BS06276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847962..13848106 17..161 100 -> Plus
arm_2L 13848252..13848998 162..908 100   Plus

BS06276.pep Sequence

Translation from 16 to 909

> BS06276.pep
MRFLVVLACLVAVCAAGTLPNEVEQRLLELADQNGDIDLVAEPQEGVEVA
PQFIVSWQARRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFE
TLNHVFRLKIAGLNDFNIQKFKLNVITSKITFDFLFKNIDTTAQKYDTDT
LIDALRQLGLSVEYEGSGELLFDLVNLRIAGTLKYKLPMLWGSAKITSLK
TTISLESVTSDITGFMGNGKINRAINSQLENIVVKGINGNQDAISETIEN
AIVPRVNKMLKGKDFWTVVDLILASSDGESEDDPIVVDCDPSADPWA*

BS06276.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-PB 297 CG7953-PB 1..297 1..297 1521 100 Plus
CG7953-PA 297 CG7953-PA 1..297 1..297 1521 100 Plus
CG7916-PA 287 CG7916-PA 19..278 36..296 434 36.3 Plus
CG8997-PB 260 CG8997-PB 36..260 63..296 356 34.5 Plus
CG8997-PA 260 CG8997-PA 36..260 63..296 356 34.5 Plus