Clone BS06277 Report

Search the DGRC for BS06277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptspheroide-RA
Protein status:BS06277.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06277.3prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-03

> BS06277.3prime
ATGGTCTAGAAAGCTTCTAGGCGATCTGCTCCTGGATCCAATCCGCGTAG
CTGGAGAGTCGGACAAAGACATCCGGATAGCGGGAGCCACAGGCGCCCAC
CACAAAGTTGGTCAGCCCGATCAACGTGTTGCCATAGATGGCACCACCGC
CTCCGTCTCCGTGGCAGGTGCCCTCCTTCAGCTCGTGGGCGAGGCAGAAG
CTCTGCTCGTCGTGATCGCTGTACGCATCCAGGCAGGTCGCCTCCGGGGC
CACCTTTAGCGATATCTGACGGATCTTGTAGGAGTTGGTGCCGTCGCTGG
TGCGTCCCCAGCCGGCCACGATCACCTCCGATCCCTCGGCGGGCAGTGCC
TCTCCGCTGGCGACCAGCGGGATGGCAGTGATCCGATCGGTGTAGGTCAG
CTCAGAGCTCAGCGTGATCACGGCCAGGTTGTTGTTCAGATTATAGTAGT
CCGGATGCACTGCAACCGATTCCACGTTGACAATCTTGCCACCAGCATAC
TGGTTGGTACTGCCCACGCGGCACGCCAGGCGACTGGCATCGATTAGCTT
TCCATCGCGATGCACACAGTGGGCGGTGGTCAGGATTTTGGTCTGGGAGA
GAATGCTACCGCCGCACACATGGGCATTGTCCACCCGCAAGGAGGCGGTG
AAGGTCGTGGCTGTGGCGTCCGCGTCCTCCCCTCCCATGATGCGTCCCTG
GGCGTGGCACATGCCCACCGCCGTCAATCCGATCAGACCCAAAATCACTA
GTCTCGGCTGCATCATGTCGACTGATAACT

BS06277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9675-PA 750 CG9675-RA 1..750 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1263 CG9675-RA 76..826 766..16 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700883..16701412 16..545 2650 100 Plus
X 23542271 X 16701677..16701897 546..766 1105 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:21:41 has no hits.

BS06277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:06 Download gff for BS06277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:29 Download gff for BS06277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:02 Download gff for BS06277.3prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..834 9..766 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:03 Download gff for BS06277.3prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..834 9..766 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:03 Download gff for BS06277.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16700875..16701412 9..545 99 <- Plus
X 16701677..16701897 546..766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:02 Download gff for BS06277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594908..16595445 9..545 99 <- Plus
arm_X 16595710..16595930 546..766 100   Plus

BS06277.5prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-03

> BS06277.5prime
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCTAGAAGCTTTCTAGACC

BS06277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9675-PA 750 CG9675-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1263 CG9675-RA 76..826 17..767 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700883..16701412 767..238 2650 100 Minus
X 23542271 X 16701677..16701897 237..17 1105 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:39:00 has no hits.

BS06277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:07 Download gff for BS06277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:31 Download gff for BS06277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:12 Download gff for BS06277.5prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..834 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:07 Download gff for BS06277.5prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..834 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:07 Download gff for BS06277.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16700875..16701412 238..774 99 <- Minus
X 16701677..16701897 17..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:12 Download gff for BS06277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594908..16595445 238..774 99 <- Minus
arm_X 16595710..16595930 17..237 100   Minus

BS06277.complete Sequence

782 bp (782 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635427

> BS06277.complete
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCTAGAAGCTTTCTAGACCAT

BS06277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 750 CG9675-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1263 CG9675-RA 76..826 17..767 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700883..16701412 767..238 2650 100 Minus
X 23542271 X 16701677..16701897 237..17 1105 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:54:23 has no hits.

BS06277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:57 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:31 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 60..818 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:26 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..825 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:57 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 60..818 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:39 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..825 17..766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:39 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
X 16700884..16701412 238..766 100 <- Minus
X 16701677..16701897 17..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:26 Download gff for BS06277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594917..16595445 238..766 100 <- Minus
arm_X 16595710..16595930 17..237 100   Minus

BS06277.pep Sequence

Translation from 16 to 765

> BS06277.pep
MMQPRLVILGLIGLTAVGMCHAQGRIMGGEDADATATTFTASLRVDNAHV
CGGSILSQTKILTTAHCVHRDGKLIDASRLACRVGSTNQYAGGKIVNVES
VAVHPDYYNLNNNLAVITLSSELTYTDRITAIPLVASGEALPAEGSEVIV
AGWGRTSDGTNSYKIRQISLKVAPEATCLDAYSDHDEQSFCLAHELKEGT
CHGDGGGGAIYGNTLIGLTNFVVGACGSRYPDVFVRLSSYADWIQEQIA*

BS06277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-PA 249 CG9675-PA 1..249 1..249 1296 100 Plus
CG9673-PB 261 CG9673-PB 1..257 1..245 464 42.8 Plus
CG9673-PA 261 CG9673-PA 1..257 1..245 464 42.8 Plus
Ser6-PA 259 CG2071-PA 30..255 24..246 386 38 Plus
CG9672-PA 253 CG9672-PA 7..251 9..248 384 37.2 Plus