Clone Sequence Records
BS06277.3prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-03
> BS06277.3prime
ATGGTCTAGAAAGCTTCTAGGCGATCTGCTCCTGGATCCAATCCGCGTAG
CTGGAGAGTCGGACAAAGACATCCGGATAGCGGGAGCCACAGGCGCCCAC
CACAAAGTTGGTCAGCCCGATCAACGTGTTGCCATAGATGGCACCACCGC
CTCCGTCTCCGTGGCAGGTGCCCTCCTTCAGCTCGTGGGCGAGGCAGAAG
CTCTGCTCGTCGTGATCGCTGTACGCATCCAGGCAGGTCGCCTCCGGGGC
CACCTTTAGCGATATCTGACGGATCTTGTAGGAGTTGGTGCCGTCGCTGG
TGCGTCCCCAGCCGGCCACGATCACCTCCGATCCCTCGGCGGGCAGTGCC
TCTCCGCTGGCGACCAGCGGGATGGCAGTGATCCGATCGGTGTAGGTCAG
CTCAGAGCTCAGCGTGATCACGGCCAGGTTGTTGTTCAGATTATAGTAGT
CCGGATGCACTGCAACCGATTCCACGTTGACAATCTTGCCACCAGCATAC
TGGTTGGTACTGCCCACGCGGCACGCCAGGCGACTGGCATCGATTAGCTT
TCCATCGCGATGCACACAGTGGGCGGTGGTCAGGATTTTGGTCTGGGAGA
GAATGCTACCGCCGCACACATGGGCATTGTCCACCCGCAAGGAGGCGGTG
AAGGTCGTGGCTGTGGCGTCCGCGTCCTCCCCTCCCATGATGCGTCCCTG
GGCGTGGCACATGCCCACCGCCGTCAATCCGATCAGACCCAAAATCACTA
GTCTCGGCTGCATCATGTCGACTGATAACT
BS06277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9675-PA | 750 | CG9675-RA | 1..750 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 1263 | CG9675-RA | 76..826 | 766..16 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16700883..16701412 | 16..545 | 2650 | 100 | Plus |
X | 23542271 | X | 16701677..16701897 | 546..766 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:21:41 has no hits.
BS06277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:06 Download gff for
BS06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:29 Download gff for
BS06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:02 Download gff for
BS06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..834 | 9..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:03 Download gff for
BS06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..834 | 9..766 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:03 Download gff for
BS06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16700875..16701412 | 9..545 | 99 | <- | Plus |
X | 16701677..16701897 | 546..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:02 Download gff for
BS06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16594908..16595445 | 9..545 | 99 | <- | Plus |
arm_X | 16595710..16595930 | 546..766 | 100 | | Plus |
BS06277.5prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-03
> BS06277.5prime
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCTAGAAGCTTTCTAGACC
BS06277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9675-PA | 750 | CG9675-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 1263 | CG9675-RA | 76..826 | 17..767 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16700883..16701412 | 767..238 | 2650 | 100 | Minus |
X | 23542271 | X | 16701677..16701897 | 237..17 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:39:00 has no hits.
BS06277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:07 Download gff for
BS06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:31 Download gff for
BS06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:12 Download gff for
BS06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..834 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:07 Download gff for
BS06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..834 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:07 Download gff for
BS06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16700875..16701412 | 238..774 | 99 | <- | Minus |
X | 16701677..16701897 | 17..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:12 Download gff for
BS06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16594908..16595445 | 238..774 | 99 | <- | Minus |
arm_X | 16595710..16595930 | 17..237 | 100 | | Minus |
BS06277.complete Sequence
782 bp (782 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635427
> BS06277.complete
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCTAGAAGCTTTCTAGACCAT
BS06277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 750 | CG9675-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 1263 | CG9675-RA | 76..826 | 17..767 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16700883..16701412 | 767..238 | 2650 | 100 | Minus |
X | 23542271 | X | 16701677..16701897 | 237..17 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:23 has no hits.
BS06277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:57 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:31 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 60..818 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:26 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..825 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:57 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 60..818 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:39 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..825 | 17..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:39 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16700884..16701412 | 238..766 | 100 | <- | Minus |
X | 16701677..16701897 | 17..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:26 Download gff for
BS06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16594917..16595445 | 238..766 | 100 | <- | Minus |
arm_X | 16595710..16595930 | 17..237 | 100 | | Minus |
BS06277.pep Sequence
Translation from 16 to 765
> BS06277.pep
MMQPRLVILGLIGLTAVGMCHAQGRIMGGEDADATATTFTASLRVDNAHV
CGGSILSQTKILTTAHCVHRDGKLIDASRLACRVGSTNQYAGGKIVNVES
VAVHPDYYNLNNNLAVITLSSELTYTDRITAIPLVASGEALPAEGSEVIV
AGWGRTSDGTNSYKIRQISLKVAPEATCLDAYSDHDEQSFCLAHELKEGT
CHGDGGGGAIYGNTLIGLTNFVVGACGSRYPDVFVRLSSYADWIQEQIA*
BS06277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-PA | 249 | CG9675-PA | 1..249 | 1..249 | 1296 | 100 | Plus |
CG9673-PB | 261 | CG9673-PB | 1..257 | 1..245 | 464 | 42.8 | Plus |
CG9673-PA | 261 | CG9673-PA | 1..257 | 1..245 | 464 | 42.8 | Plus |
Ser6-PA | 259 | CG2071-PA | 30..255 | 24..246 | 386 | 38 | Plus |
CG9672-PA | 253 | CG9672-PA | 7..251 | 9..248 | 384 | 37.2 | Plus |