Clone Sequence Records
BS06279.3prime Sequence
945 bp (812 high quality bases) assembled on 2005-12-03
> BS06279.3prime
ATGGTCTAGAAAGCTTCTAAGCTACTTGGTACTTGAGCCTATCAATGTCC
TTGCCCTTGGGTTGGGTCTGCTGGTGAAGGGGCGCGATCTCCAGAGGTTT
GGGCGTGGGAGTGTCCTTCAGTGGCATAGGCGGCATAGCGATGTCCTCGG
TCGTCTTTGCAGGCTCCAAAACTGAAACTGGTTTTGGAACTGCTACTTGA
ATAGGAACTGGCACTGGCTTCTGGGTGGATTCCACTTTCTTCTGTGGCAT
TAGGGAAAGGGGATCCTTCTGCTTGTTTTCCTTTTGGTCATCCTTCTCCT
CGCTGCTTTCGCTGCTGTCCTTCTCGTTCTTATTTTTCTCAGCCTTCTCC
TTCTTCTTTTGCTCCTTCTCCAGCTTGTGTTGTTCCTCCTCCTGCTTACG
CTTCTCCTCCTCCAGCTTCAATTGCTCCACGATGGCCGCATCCCGGAAAT
AAGGCGATGACCGGAACTTCTTGTCGGCATAGGCAGTTTCCTGCGGATAT
TTCGCCTGGCACTCGGCATAGGCGAAGTCCGTCCAAAGACCGTGGGATCG
GCACTTGGCTACACCCAACTTGCACTTGTTGTAGAAAACGGCCACCTCTG
AGGTGGTCCTGCCGCAGATGGGCTCGTACAGTTCATCGCAATCATCGTCG
CACAGATAGCCCTCGCTCAAGGACTGCGCGGCACTGTTGATAGCCGCGGA
ATTGGAAGACTGGCAATTCTTCTGGCCCGACTCACAGCTGAACCAGGCGA
TGGGAATGGCCAAATAGGGGGGACTTAGACGCTTCTGTGCGGCTCCAATC
TCACCGGGAGCCGCAAAGGTGCGCTTTACATAGTAGCCGTGCTCTTCGGT
GGAAATTGGAGTGTTTCCAGCCAAATCCGTGGAGCTAGACCACTTGGTCT
TTGTCTTGGTCTTGTGGGGATCAGACTTTTCATAGTGATGATCGG
BS06279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10717-PA | 1026 | ImpL1-RA | 98..1026 | 945..17 | 4645 | 100 | Minus |
CG10717-PB | 1101 | ImpL1-RB | 173..1101 | 945..17 | 4645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RC | 1157 | CG10717-RC | 135..1065 | 945..15 | 4655 | 100 | Minus |
ImpL1-RB | 1230 | CG10717-RB | 208..1138 | 945..15 | 4655 | 100 | Minus |
ImpL1-RA | 1160 | CG10717-RA | 138..1068 | 945..15 | 4655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13382977..13383907 | 945..15 | 4655 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 418..300 | 117 | 56.8 | Minus |
BS06279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:11 Download gff for
BS06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-PA | 98..1026 | 17..945 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:36 Download gff for
BS06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10717-PB | 173..1101 | 17..945 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:21 Download gff for
BS06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RA | 138..1068 | 15..945 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:55:21 Download gff for
BS06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RA | 138..1068 | 15..945 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:55:21 Download gff for
BS06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13382977..13383907 | 15..945 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:21 Download gff for
BS06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13376077..13377007 | 15..945 | 100 | | Minus |
BS06279.5prime Sequence
879 bp (771 high quality bases) assembled on 2005-12-03
> BS06279.5prime
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAAGGATGACAA
AAGGAAAACAAGCAGAAGGATCCCCTTTC
BS06279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10717-PB | 1101 | ImpL1-RB | 1..824 | 17..840 | 4120 | 100 | Plus |
CG10717-PA | 1026 | ImpL1-RA | 29..749 | 120..840 | 3605 | 100 | Plus |
CG10717-PB | 1101 | ImpL1-RB | 832..863 | 848..879 | 160 | 100 | Plus |
CG10717-PA | 1026 | ImpL1-RA | 757..788 | 848..879 | 160 | 100 | Plus |
CG10717-PA | 1026 | ImpL1-RA | 1..31 | 17..47 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RB | 1230 | CG10717-RB | 34..898 | 15..879 | 4280 | 99.8 | Plus |
ImpL1-RA | 1160 | CG10717-RA | 69..828 | 120..879 | 3755 | 99.7 | Plus |
ImpL1-RC | 1157 | CG10717-RC | 70..825 | 124..879 | 3735 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13382803..13383667 | 15..879 | 4235 | 99.3 | Plus |
Blast to na_te.dros performed 2015-02-11 14:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 716..834 | 117 | 56.8 | Plus |
BS06279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:12 Download gff for
BS06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-PB | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:37 Download gff for
BS06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10717-PB | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:47:49 Download gff for
BS06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 27..898 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:44 Download gff for
BS06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 27..898 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:44 Download gff for
BS06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13382796..13383667 | 9..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:47:49 Download gff for
BS06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13375896..13376767 | 9..879 | 99 | | Plus |
BS06279.complete Sequence
1133 bp (1133 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ638791
> BS06279.complete
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAGGATGACCAA
AAGGAAAACAAGCAGAAGGATCCCCTTTCCCTAATGCCACAGAAGAAAGT
GGAATCCACCCAGAAGCCAGTGCCAGTTCCTATTCAAGTAGCAGTTCCAA
AACCAGTTTCAGTTTTGGAGCCTGCAAAGACGACCGAGGACATCGCTATG
CCGCCTATGCCACTGAAGGACACTCCCACGCCCAAACCTCTGGAGATCGC
GCCCCTTCACCAGCAGACCCAACCCAAGGGCAAGGACATTGATAGGCTCA
AGTACCAAGTAGCTTAGAAGCTTTCTAGACCAT
BS06279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RB | 1101 | CG10717-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
ImpL1-RA | 1026 | CG10717-PA | 29..1026 | 120..1117 | 4990 | 100 | Plus |
ImpL1-RC | 1023 | CG10717-PC | 30..1023 | 124..1117 | 4970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RB | 1230 | CG10717-RB | 34..1138 | 15..1119 | 5525 | 100 | Plus |
ImpL1-RA | 1160 | CG10717-RA | 69..1068 | 120..1119 | 5000 | 100 | Plus |
ImpL1-RC | 1157 | CG10717-RC | 70..1065 | 124..1119 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13382803..13383907 | 15..1119 | 5525 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 716..834 | 117 | 56.8 | Plus |
BS06279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:35 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 1..1101 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:04 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 11..1122 | 9..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:27 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 36..1136 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:36 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 11..1122 | 9..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:34 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 36..1136 | 17..1117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:34 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13382805..13383905 | 17..1117 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:27 Download gff for
BS06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13375905..13377005 | 17..1117 | 100 | | Plus |
BS06279.pep Sequence
Translation from 16 to 1116
> BS06279.pep
MRPYQVVCIVGKSRISKLTSSGSPIINWYAPISFLAVAALLLLEAIPADA
KRRKHKGSDHHYEKSDPHKTKTKTKWSSSTDLAGNTPISTEEHGYYVKRT
FAAPGEIGAAQKRLSPPYLAIPIAWFSCESGQKNCQSSNSAAINSAAQSL
SEGYLCDDDCDELYEPICGRTTSEVAVFYNKCKLGVAKCRSHGLWTDFAY
AECQAKYPQETAYADKKFRSSPYFRDAAIVEQLKLEEEKRKQEEEQHKLE
KEQKKKEKAEKNKNEKDSSESSEEKDDQKENKQKDPLSLMPQKKVESTQK
PVPVPIQVAVPKPVSVLEPAKTTEDIAMPPMPLKDTPTPKPLEIAPLHQQ
TQPKGKDIDRLKYQVA*
BS06279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-PB | 366 | CG10717-PB | 1..366 | 1..366 | 1925 | 100 | Plus |
ImpL1-PA | 341 | CG10717-PA | 1..341 | 1..366 | 1761 | 93.2 | Plus |
ImpL1-PC | 340 | CG10717-PC | 1..340 | 1..366 | 1756 | 92.9 | Plus |