Clone BS06279 Report

Search the DGRC for BS06279

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptImpL1-RB
Protein status:BS06279.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06279.3prime Sequence

945 bp (812 high quality bases) assembled on 2005-12-03

> BS06279.3prime
ATGGTCTAGAAAGCTTCTAAGCTACTTGGTACTTGAGCCTATCAATGTCC
TTGCCCTTGGGTTGGGTCTGCTGGTGAAGGGGCGCGATCTCCAGAGGTTT
GGGCGTGGGAGTGTCCTTCAGTGGCATAGGCGGCATAGCGATGTCCTCGG
TCGTCTTTGCAGGCTCCAAAACTGAAACTGGTTTTGGAACTGCTACTTGA
ATAGGAACTGGCACTGGCTTCTGGGTGGATTCCACTTTCTTCTGTGGCAT
TAGGGAAAGGGGATCCTTCTGCTTGTTTTCCTTTTGGTCATCCTTCTCCT
CGCTGCTTTCGCTGCTGTCCTTCTCGTTCTTATTTTTCTCAGCCTTCTCC
TTCTTCTTTTGCTCCTTCTCCAGCTTGTGTTGTTCCTCCTCCTGCTTACG
CTTCTCCTCCTCCAGCTTCAATTGCTCCACGATGGCCGCATCCCGGAAAT
AAGGCGATGACCGGAACTTCTTGTCGGCATAGGCAGTTTCCTGCGGATAT
TTCGCCTGGCACTCGGCATAGGCGAAGTCCGTCCAAAGACCGTGGGATCG
GCACTTGGCTACACCCAACTTGCACTTGTTGTAGAAAACGGCCACCTCTG
AGGTGGTCCTGCCGCAGATGGGCTCGTACAGTTCATCGCAATCATCGTCG
CACAGATAGCCCTCGCTCAAGGACTGCGCGGCACTGTTGATAGCCGCGGA
ATTGGAAGACTGGCAATTCTTCTGGCCCGACTCACAGCTGAACCAGGCGA
TGGGAATGGCCAAATAGGGGGGACTTAGACGCTTCTGTGCGGCTCCAATC
TCACCGGGAGCCGCAAAGGTGCGCTTTACATAGTAGCCGTGCTCTTCGGT
GGAAATTGGAGTGTTTCCAGCCAAATCCGTGGAGCTAGACCACTTGGTCT
TTGTCTTGGTCTTGTGGGGATCAGACTTTTCATAGTGATGATCGG

BS06279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10717-PA 1026 ImpL1-RA 98..1026 945..17 4645 100 Minus
CG10717-PB 1101 ImpL1-RB 173..1101 945..17 4645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RC 1157 CG10717-RC 135..1065 945..15 4655 100 Minus
ImpL1-RB 1230 CG10717-RB 208..1138 945..15 4655 100 Minus
ImpL1-RA 1160 CG10717-RA 138..1068 945..15 4655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382977..13383907 945..15 4655 100 Minus
Blast to na_te.dros performed 2015-02-12 01:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 418..300 117 56.8 Minus

BS06279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:11 Download gff for BS06279.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-PA 98..1026 17..945 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:36 Download gff for BS06279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10717-PB 173..1101 17..945 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:21 Download gff for BS06279.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 138..1068 15..945 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:55:21 Download gff for BS06279.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 138..1068 15..945 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:55:21 Download gff for BS06279.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13382977..13383907 15..945 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:21 Download gff for BS06279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13376077..13377007 15..945 100   Minus

BS06279.5prime Sequence

879 bp (771 high quality bases) assembled on 2005-12-03

> BS06279.5prime
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAAGGATGACAA
AAGGAAAACAAGCAGAAGGATCCCCTTTC

BS06279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10717-PB 1101 ImpL1-RB 1..824 17..840 4120 100 Plus
CG10717-PA 1026 ImpL1-RA 29..749 120..840 3605 100 Plus
CG10717-PB 1101 ImpL1-RB 832..863 848..879 160 100 Plus
CG10717-PA 1026 ImpL1-RA 757..788 848..879 160 100 Plus
CG10717-PA 1026 ImpL1-RA 1..31 17..47 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RB 1230 CG10717-RB 34..898 15..879 4280 99.8 Plus
ImpL1-RA 1160 CG10717-RA 69..828 120..879 3755 99.7 Plus
ImpL1-RC 1157 CG10717-RC 70..825 124..879 3735 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382803..13383667 15..879 4235 99.3 Plus
Blast to na_te.dros performed 2015-02-11 14:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 716..834 117 56.8 Plus

BS06279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:12 Download gff for BS06279.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-PB 1..863 17..879 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:37 Download gff for BS06279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10717-PB 1..863 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:47:49 Download gff for BS06279.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 27..898 9..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:44 Download gff for BS06279.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 27..898 9..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:44 Download gff for BS06279.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13382796..13383667 9..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:47:49 Download gff for BS06279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13375896..13376767 9..879 99   Plus

BS06279.complete Sequence

1133 bp (1133 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ638791

> BS06279.complete
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAGGATGACCAA
AAGGAAAACAAGCAGAAGGATCCCCTTTCCCTAATGCCACAGAAGAAAGT
GGAATCCACCCAGAAGCCAGTGCCAGTTCCTATTCAAGTAGCAGTTCCAA
AACCAGTTTCAGTTTTGGAGCCTGCAAAGACGACCGAGGACATCGCTATG
CCGCCTATGCCACTGAAGGACACTCCCACGCCCAAACCTCTGGAGATCGC
GCCCCTTCACCAGCAGACCCAACCCAAGGGCAAGGACATTGATAGGCTCA
AGTACCAAGTAGCTTAGAAGCTTTCTAGACCAT

BS06279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RB 1101 CG10717-PB 1..1101 17..1117 5505 100 Plus
ImpL1-RA 1026 CG10717-PA 29..1026 120..1117 4990 100 Plus
ImpL1-RC 1023 CG10717-PC 30..1023 124..1117 4970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RB 1230 CG10717-RB 34..1138 15..1119 5525 100 Plus
ImpL1-RA 1160 CG10717-RA 69..1068 120..1119 5000 100 Plus
ImpL1-RC 1157 CG10717-RC 70..1065 124..1119 4980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382803..13383907 15..1119 5525 100 Plus
Blast to na_te.dros performed 2014-11-27 08:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 716..834 117 56.8 Plus

BS06279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:35 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 1..1101 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:04 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 11..1122 9..1119 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:27 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 36..1136 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:36 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 11..1122 9..1119 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:34 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 36..1136 17..1117 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:34 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13382805..13383905 17..1117 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:27 Download gff for BS06279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13375905..13377005 17..1117 100   Plus

BS06279.pep Sequence

Translation from 16 to 1116

> BS06279.pep
MRPYQVVCIVGKSRISKLTSSGSPIINWYAPISFLAVAALLLLEAIPADA
KRRKHKGSDHHYEKSDPHKTKTKTKWSSSTDLAGNTPISTEEHGYYVKRT
FAAPGEIGAAQKRLSPPYLAIPIAWFSCESGQKNCQSSNSAAINSAAQSL
SEGYLCDDDCDELYEPICGRTTSEVAVFYNKCKLGVAKCRSHGLWTDFAY
AECQAKYPQETAYADKKFRSSPYFRDAAIVEQLKLEEEKRKQEEEQHKLE
KEQKKKEKAEKNKNEKDSSESSEEKDDQKENKQKDPLSLMPQKKVESTQK
PVPVPIQVAVPKPVSVLEPAKTTEDIAMPPMPLKDTPTPKPLEIAPLHQQ
TQPKGKDIDRLKYQVA*

BS06279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-PB 366 CG10717-PB 1..366 1..366 1925 100 Plus
ImpL1-PA 341 CG10717-PA 1..341 1..366 1761 93.2 Plus
ImpL1-PC 340 CG10717-PC 1..340 1..366 1756 92.9 Plus