Clone BS06280 Report

Search the DGRC for BS06280

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptmge-RA
Protein status:BS06280.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06280.3prime Sequence

477 bp (476 high quality bases) assembled on 2005-12-03

> BS06280.3prime
ATGGTCTAGAAAGCTTTTAACGAATCAAGGGTAAGCTGGGCGACGGCCCT
CCAGGACCCATCGCACTGCCGGGTCCAAGAAGCACCTGCTTCTGCTGCGA
CTTGTGCAGCTCCTCCATCTGGGCGCGCTCCGTCTCGAAGATGACCGGGG
CGAACAGGATAACCGCGCTGGTGAAGAATATCCAGCTGGCGTTGCACGAG
AACGAGTAGAAGCCCTTGACGCTCTTCACCGTGGCGCTGCTCACGGCGCC
GACTGCATTCCTCACTGGCTCCGGGAACATCTCGGTTAGTCCCCAGAAGC
GCTCGGATGCCGTCTCATCGGGCTCATCATCGTAGTTCTCGCGTTGCGGA
TCATTGGAGGTGGCAGCCACTGCCCGACGCTCCGGCGTCTCGTCCTTGCT
GCCGCCTAACGACGACATGCCGCTGTCCTTTTCAATGAACTCGATTTCAG
GATCAGAGTCCATGTCGACTGATAACT

BS06280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14981-PA 447 mge-RA 1..447 463..17 2235 100 Minus
CG14981-PB 369 mge-RB 25..369 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 1088 CG14981-RA 271..717 463..17 2235 100 Minus
mge-RB 886 CG14981-RB 176..520 361..17 1725 100 Minus
mge-RC 1313 CG14981-RC 634..942 325..17 1545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3908223..3908531 17..325 1545 100 Plus
3L 28110227 3L 3909221..3909322 362..463 510 100 Plus
3L 28110227 3L 3909003..3909039 325..361 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:48:08 has no hits.

BS06280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:13 Download gff for BS06280.3prime
Subject Subject Range Query Range Percent Splice Strand
mge-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:38 Download gff for BS06280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14981-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:53 Download gff for BS06280.3prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 17..463 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:15 Download gff for BS06280.3prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 17..463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:15 Download gff for BS06280.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3908223..3908531 17..325 100 <- Plus
3L 3909004..3909039 326..361 100 <- Plus
3L 3909221..3909322 362..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:53 Download gff for BS06280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3908223..3908531 17..325 100 <- Plus
arm_3L 3909004..3909039 326..361 100 <- Plus
arm_3L 3909221..3909322 362..463 100   Plus

BS06280.5prime Sequence

477 bp (476 high quality bases) assembled on 2005-12-03

> BS06280.5prime
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTTAAAAGCTTTCTAGACC

BS06280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14981-PA 447 mge-RA 1..447 17..463 2235 100 Plus
CG14981-PB 369 mge-RB 25..369 119..463 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 1088 CG14981-RA 271..717 17..463 2235 100 Plus
mge-RB 886 CG14981-RB 176..520 119..463 1725 100 Plus
mge-RC 1313 CG14981-RC 634..942 155..463 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3908223..3908531 463..155 1545 100 Minus
3L 28110227 3L 3909221..3909322 118..17 510 100 Minus
3L 28110227 3L 3909003..3909039 155..119 185 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:33:04 has no hits.

BS06280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:14 Download gff for BS06280.5prime
Subject Subject Range Query Range Percent Splice Strand
mge-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:40 Download gff for BS06280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14981-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:08 Download gff for BS06280.5prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:39 Download gff for BS06280.5prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:39 Download gff for BS06280.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3908223..3908531 155..463 100 <- Minus
3L 3909004..3909039 119..154 100 <- Minus
3L 3909221..3909322 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:08 Download gff for BS06280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3908223..3908531 155..463 100 <- Minus
arm_3L 3909004..3909039 119..154 100 <- Minus
arm_3L 3909221..3909322 17..118 100   Minus

BS06280.complete Sequence

479 bp (479 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635428

> BS06280.complete
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTTAAAAGCTTTCTAGACCAT

BS06280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 447 CG14981-PA 1..447 17..463 2235 100 Plus
mge-RB 369 CG14981-PB 25..369 119..463 1725 100 Plus
mge-RC 159 CG14981-PC 1..139 17..155 695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 1088 CG14981-RA 271..717 17..463 2235 100 Plus
mge-RB 886 CG14981-RB 176..520 119..463 1725 100 Plus
mge-RC 1313 CG14981-RC 634..942 155..463 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3908223..3908531 463..155 1545 100 Minus
3L 28110227 3L 3909221..3909322 118..17 510 100 Minus
3L 28110227 3L 3909003..3909039 155..119 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:50:30 has no hits.

BS06280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:04 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:19 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 269..715 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:06 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..715 17..461 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:04 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 269..715 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:49 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..715 17..461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:49 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3908225..3908531 155..461 100 <- Minus
3L 3909004..3909039 119..154 100 <- Minus
3L 3909221..3909322 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:06 Download gff for BS06280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3908225..3908531 155..461 100 <- Minus
arm_3L 3909004..3909039 119..154 100 <- Minus
arm_3L 3909221..3909322 17..118 100   Minus

BS06280.pep Sequence

Translation from 16 to 462

> BS06280.pep
MDSDPEIEFIEKDSGMSSLGGSKDETPERRAVAATSNDPQRENYDDEPDE
TASERFWGLTEMFPEPVRNAVGAVSSATVKSVKGFYSFSCNASWIFFTSA
VILFAPVIFETERAQMEELHKSQQKQVLLGPGSAMGPGGPSPSLPLIR*

BS06280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
mge-PA 148 CG14981-PA 1..148 1..148 766 100 Plus
mge-PB 122 CG14981-PB 9..122 35..148 596 100 Plus
mge-PC 52 CG14981-PC 1..46 1..46 238 100 Plus