Clone Sequence Records
BS06280.3prime Sequence
477 bp (476 high quality bases) assembled on 2005-12-03
> BS06280.3prime
ATGGTCTAGAAAGCTTTTAACGAATCAAGGGTAAGCTGGGCGACGGCCCT
CCAGGACCCATCGCACTGCCGGGTCCAAGAAGCACCTGCTTCTGCTGCGA
CTTGTGCAGCTCCTCCATCTGGGCGCGCTCCGTCTCGAAGATGACCGGGG
CGAACAGGATAACCGCGCTGGTGAAGAATATCCAGCTGGCGTTGCACGAG
AACGAGTAGAAGCCCTTGACGCTCTTCACCGTGGCGCTGCTCACGGCGCC
GACTGCATTCCTCACTGGCTCCGGGAACATCTCGGTTAGTCCCCAGAAGC
GCTCGGATGCCGTCTCATCGGGCTCATCATCGTAGTTCTCGCGTTGCGGA
TCATTGGAGGTGGCAGCCACTGCCCGACGCTCCGGCGTCTCGTCCTTGCT
GCCGCCTAACGACGACATGCCGCTGTCCTTTTCAATGAACTCGATTTCAG
GATCAGAGTCCATGTCGACTGATAACT
BS06280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14981-PA | 447 | mge-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
CG14981-PB | 369 | mge-RB | 25..369 | 361..17 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 1088 | CG14981-RA | 271..717 | 463..17 | 2235 | 100 | Minus |
mge-RB | 886 | CG14981-RB | 176..520 | 361..17 | 1725 | 100 | Minus |
mge-RC | 1313 | CG14981-RC | 634..942 | 325..17 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3908223..3908531 | 17..325 | 1545 | 100 | Plus |
3L | 28110227 | 3L | 3909221..3909322 | 362..463 | 510 | 100 | Plus |
3L | 28110227 | 3L | 3909003..3909039 | 325..361 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:48:08 has no hits.
BS06280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:13 Download gff for
BS06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:38 Download gff for
BS06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14981-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:53 Download gff for
BS06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:15 Download gff for
BS06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 17..463 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:15 Download gff for
BS06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3908223..3908531 | 17..325 | 100 | <- | Plus |
3L | 3909004..3909039 | 326..361 | 100 | <- | Plus |
3L | 3909221..3909322 | 362..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:53 Download gff for
BS06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3908223..3908531 | 17..325 | 100 | <- | Plus |
arm_3L | 3909004..3909039 | 326..361 | 100 | <- | Plus |
arm_3L | 3909221..3909322 | 362..463 | 100 | | Plus |
BS06280.5prime Sequence
477 bp (476 high quality bases) assembled on 2005-12-03
> BS06280.5prime
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTTAAAAGCTTTCTAGACC
BS06280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14981-PA | 447 | mge-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
CG14981-PB | 369 | mge-RB | 25..369 | 119..463 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 1088 | CG14981-RA | 271..717 | 17..463 | 2235 | 100 | Plus |
mge-RB | 886 | CG14981-RB | 176..520 | 119..463 | 1725 | 100 | Plus |
mge-RC | 1313 | CG14981-RC | 634..942 | 155..463 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3908223..3908531 | 463..155 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 3909221..3909322 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3909003..3909039 | 155..119 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:33:04 has no hits.
BS06280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:14 Download gff for
BS06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:40 Download gff for
BS06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14981-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:08 Download gff for
BS06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:39 Download gff for
BS06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:39 Download gff for
BS06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3908223..3908531 | 155..463 | 100 | <- | Minus |
3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
3L | 3909221..3909322 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:08 Download gff for
BS06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3908223..3908531 | 155..463 | 100 | <- | Minus |
arm_3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
arm_3L | 3909221..3909322 | 17..118 | 100 | | Minus |
BS06280.complete Sequence
479 bp (479 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635428
> BS06280.complete
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTTAAAAGCTTTCTAGACCAT
BS06280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 447 | CG14981-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
mge-RB | 369 | CG14981-PB | 25..369 | 119..463 | 1725 | 100 | Plus |
mge-RC | 159 | CG14981-PC | 1..139 | 17..155 | 695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 1088 | CG14981-RA | 271..717 | 17..463 | 2235 | 100 | Plus |
mge-RB | 886 | CG14981-RB | 176..520 | 119..463 | 1725 | 100 | Plus |
mge-RC | 1313 | CG14981-RC | 634..942 | 155..463 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3908223..3908531 | 463..155 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 3909221..3909322 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3909003..3909039 | 155..119 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:50:30 has no hits.
BS06280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:04 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:19 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 269..715 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:06 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..715 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:04 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 269..715 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:49 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..715 | 17..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:49 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3908225..3908531 | 155..461 | 100 | <- | Minus |
3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
3L | 3909221..3909322 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:06 Download gff for
BS06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3908225..3908531 | 155..461 | 100 | <- | Minus |
arm_3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
arm_3L | 3909221..3909322 | 17..118 | 100 | | Minus |
BS06280.pep Sequence
Translation from 16 to 462
> BS06280.pep
MDSDPEIEFIEKDSGMSSLGGSKDETPERRAVAATSNDPQRENYDDEPDE
TASERFWGLTEMFPEPVRNAVGAVSSATVKSVKGFYSFSCNASWIFFTSA
VILFAPVIFETERAQMEELHKSQQKQVLLGPGSAMGPGGPSPSLPLIR*
BS06280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-PA | 148 | CG14981-PA | 1..148 | 1..148 | 766 | 100 | Plus |
mge-PB | 122 | CG14981-PB | 9..122 | 35..148 | 596 | 100 | Plus |
mge-PC | 52 | CG14981-PC | 1..46 | 1..46 | 238 | 100 | Plus |