Clone Sequence Records
BS06281.3prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-03
> BS06281.3prime
ATGGTCTAGAAAGCTTTCAGTTCAGATAGAACTTGACCTTGGGCACACCG
CTGGATACGATGCTGCTGCTGCGGGTGCTCTTGCCGCTGCTTTTACCATT
AGCAGCACCACCCAAAAGTGGGGTGTGTGCACCACTGGGGCCATCATTAC
CTTCCAGACGTCGCAGCAATCGATCCTGATCGCTGAGCCGCGGAGTTGTC
GGCATTTCGCGATTCGGCGAATGGATTCCGGCCAGATAGGTCTTGGTGCT
GATCCGGTTCAGCTTGGTGGGCTGATGGTCCTGGAAGATTTGCGAATTGG
CAAAAACCGCCAGTATCTCCGGTCCCAGGTTGGGCACATTGATCTGTGTC
TCCCGACGATAGTCCTCCTCGTGGATCTTGGCGCTCATTAGGCTCAGGCC
CAAGCTCGAGTTGCCCTGCCTCATTTGCGGCTGATCGCAAATCGGTTGGG
GCACCGTCAGCGAATTATTATTATCCACCGATGTCGGTTGTATGCGTCCA
ATGATCTGGCCATTTTTCCTGGACGCCAAGTAGTCCTCGTCCTCCTCGGG
ATTGTAGTTGGCGATGGATTCGTCGTAGCAGAAACGCTCCTCGAAGCAAT
TCCAGTAGAAATCTTCCCAGCAGTTTTGACAGCAGCGGCACATGTCGACT
GATAACT
BS06281.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-PB | 627 | CG17834-RB | 1..627 | 643..17 | 3135 | 100 | Minus |
CG17834-PD | 627 | CG17834-RD | 1..627 | 643..17 | 3135 | 100 | Minus |
CG17834-PA | 1272 | CG17834-RA | 1..494 | 643..150 | 2470 | 100 | Minus |
CG17834-PC | 1272 | CG17834-RC | 1..494 | 643..150 | 2470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 1331 | CG17834-RF | 370..997 | 643..16 | 3140 | 100 | Minus |
CG17834-RD | 1164 | CG17834-RD | 203..830 | 643..16 | 3140 | 100 | Minus |
CG17834-RB | 1236 | CG17834-RB | 275..902 | 643..16 | 3140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8537229..8537598 | 385..16 | 1850 | 100 | Minus |
2L | 23513712 | 2L | 8536893..8537071 | 562..384 | 895 | 100 | Minus |
2L | 23513712 | 2L | 8536207..8536268 | 623..562 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 15:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 94..59 | 117 | 80.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 94..59 | 117 | 80.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 94..59 | 117 | 80.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 100..59 | 111 | 73.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 96..59 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 94..57 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2387 | 91..33 | 106 | 64.4 | Minus |
BS06281.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:15 Download gff for
BS06281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PB | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:41 Download gff for
BS06281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PD | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:36 Download gff for
BS06281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 16..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:32 Download gff for
BS06281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 16..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:32 Download gff for
BS06281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8536207..8536268 | 562..623 | 100 | -> | Minus |
2L | 8536894..8537071 | 384..561 | 100 | -> | Minus |
2L | 8537231..8537598 | 16..383 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:36 Download gff for
BS06281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8536207..8536268 | 562..623 | 100 | -> | Minus |
arm_2L | 8536894..8537071 | 384..561 | 100 | -> | Minus |
arm_2L | 8537231..8537598 | 16..383 | 100 | | Minus |
BS06281.5prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-03
> BS06281.5prime
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACTGAAAGCTTT
CTAGACC
BS06281.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-PB | 627 | CG17834-RB | 1..627 | 17..643 | 3135 | 100 | Plus |
CG17834-PD | 627 | CG17834-RD | 1..627 | 17..643 | 3135 | 100 | Plus |
CG17834-PA | 1272 | CG17834-RA | 1..494 | 17..510 | 2470 | 100 | Plus |
CG17834-PC | 1272 | CG17834-RC | 1..494 | 17..510 | 2470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 1331 | CG17834-RF | 370..997 | 17..644 | 3140 | 100 | Plus |
CG17834-RD | 1164 | CG17834-RD | 203..830 | 17..644 | 3140 | 100 | Plus |
CG17834-RB | 1236 | CG17834-RB | 275..902 | 17..644 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8537229..8537598 | 275..644 | 1850 | 100 | Plus |
2L | 23513712 | 2L | 8536893..8537071 | 98..276 | 895 | 100 | Plus |
2L | 23513712 | 2L | 8536207..8536268 | 37..98 | 310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 13:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 566..601 | 117 | 80.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 560..601 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 564..601 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 566..603 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2387 | 569..627 | 106 | 64.4 | Plus |
BS06281.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:16 Download gff for
BS06281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PB | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:43 Download gff for
BS06281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PD | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:46 Download gff for
BS06281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:33 Download gff for
BS06281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 9..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:33 Download gff for
BS06281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
2L | 8537231..8537598 | 277..644 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:46 Download gff for
BS06281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
arm_2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
arm_2L | 8537231..8537598 | 277..644 | 100 | | Plus |
BS06281.complete Sequence
659 bp (659 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635429
> BS06281.complete
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACTGAAAGCTTT
CTAGACCAT
BS06281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 627 | CG17834-PF | 1..627 | 17..643 | 3135 | 100 | Plus |
CG17834-RD | 627 | CG17834-PD | 1..627 | 17..643 | 3135 | 100 | Plus |
CG17834-RB | 627 | CG17834-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 1331 | CG17834-RF | 370..997 | 17..644 | 3140 | 100 | Plus |
CG17834-RD | 1164 | CG17834-RD | 203..830 | 17..644 | 3140 | 100 | Plus |
CG17834-RB | 1236 | CG17834-RB | 275..902 | 17..644 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8537229..8537598 | 275..644 | 1850 | 100 | Plus |
2L | 23513712 | 2L | 8536893..8537071 | 98..276 | 895 | 100 | Plus |
2L | 23513712 | 2L | 8536207..8536268 | 37..98 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 566..601 | 117 | 80.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 560..601 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 564..601 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 566..603 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2387 | 569..627 | 106 | 64.4 | Plus |
BS06281.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:37 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RD | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:07 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RD | 185..819 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:19 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 275..900 | 17..642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:37 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RD | 185..819 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:27 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 275..900 | 17..642 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:27 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8536060..8536079 | 17..36 | 100 | -> | Plus |
2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
2L | 8537231..8537596 | 277..642 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:19 Download gff for
BS06281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8536060..8536079 | 17..36 | 100 | -> | Plus |
arm_2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
arm_2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
arm_2L | 8537231..8537596 | 277..642 | 100 | | Plus |
BS06281.pep Sequence
Translation from 16 to 642
> BS06281.pep
MCRCCQNCWEDFYWNCFEERFCYDESIANYNPEEDEDYLASRKNGQIIGR
IQPTSVDNNNSLTVPQPICDQPQMRQGNSSLGLSLMSAKIHEEDYRRETQ
INVPNLGPEILAVFANSQIFQDHQPTKLNRISTKTYLAGIHSPNREMPTT
PRLSDQDRLLRRLEGNDGPSGAHTPLLGGAANGKSSGKSTRSSSIVSSGV
PKVKFYLN*
BS06281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-PF | 208 | CG17834-PF | 1..208 | 1..208 | 1117 | 100 | Plus |
CG17834-PD | 208 | CG17834-PD | 1..208 | 1..208 | 1117 | 100 | Plus |
CG17834-PB | 208 | CG17834-PB | 1..208 | 1..208 | 1117 | 100 | Plus |
CG17834-PE | 423 | CG17834-PE | 1..166 | 1..166 | 899 | 99.4 | Plus |
CG17834-PC | 423 | CG17834-PC | 1..166 | 1..166 | 899 | 99.4 | Plus |