Clone BS06281 Report

Search the DGRC for BS06281

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG17834-RB
Protein status:BS06281.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06281.3prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-03

> BS06281.3prime
ATGGTCTAGAAAGCTTTCAGTTCAGATAGAACTTGACCTTGGGCACACCG
CTGGATACGATGCTGCTGCTGCGGGTGCTCTTGCCGCTGCTTTTACCATT
AGCAGCACCACCCAAAAGTGGGGTGTGTGCACCACTGGGGCCATCATTAC
CTTCCAGACGTCGCAGCAATCGATCCTGATCGCTGAGCCGCGGAGTTGTC
GGCATTTCGCGATTCGGCGAATGGATTCCGGCCAGATAGGTCTTGGTGCT
GATCCGGTTCAGCTTGGTGGGCTGATGGTCCTGGAAGATTTGCGAATTGG
CAAAAACCGCCAGTATCTCCGGTCCCAGGTTGGGCACATTGATCTGTGTC
TCCCGACGATAGTCCTCCTCGTGGATCTTGGCGCTCATTAGGCTCAGGCC
CAAGCTCGAGTTGCCCTGCCTCATTTGCGGCTGATCGCAAATCGGTTGGG
GCACCGTCAGCGAATTATTATTATCCACCGATGTCGGTTGTATGCGTCCA
ATGATCTGGCCATTTTTCCTGGACGCCAAGTAGTCCTCGTCCTCCTCGGG
ATTGTAGTTGGCGATGGATTCGTCGTAGCAGAAACGCTCCTCGAAGCAAT
TCCAGTAGAAATCTTCCCAGCAGTTTTGACAGCAGCGGCACATGTCGACT
GATAACT

BS06281.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-PB 627 CG17834-RB 1..627 643..17 3135 100 Minus
CG17834-PD 627 CG17834-RD 1..627 643..17 3135 100 Minus
CG17834-PA 1272 CG17834-RA 1..494 643..150 2470 100 Minus
CG17834-PC 1272 CG17834-RC 1..494 643..150 2470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 1331 CG17834-RF 370..997 643..16 3140 100 Minus
CG17834-RD 1164 CG17834-RD 203..830 643..16 3140 100 Minus
CG17834-RB 1236 CG17834-RB 275..902 643..16 3140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8537229..8537598 385..16 1850 100 Minus
2L 23513712 2L 8536893..8537071 562..384 895 100 Minus
2L 23513712 2L 8536207..8536268 623..562 310 100 Minus
Blast to na_te.dros performed 2015-01-30 15:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6767 94..59 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6788 94..59 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6809 94..59 117 80.6 Minus
roo 9092 roo DM_ROO 9092bp 1107..1148 100..59 111 73.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 96..59 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2858 94..57 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2387 91..33 106 64.4 Minus

BS06281.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:15 Download gff for BS06281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PB 1..627 17..643 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:41 Download gff for BS06281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PD 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:36 Download gff for BS06281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 16..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:32 Download gff for BS06281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 16..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:32 Download gff for BS06281.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8536207..8536268 562..623 100 -> Minus
2L 8536894..8537071 384..561 100 -> Minus
2L 8537231..8537598 16..383 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:36 Download gff for BS06281.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8536207..8536268 562..623 100 -> Minus
arm_2L 8536894..8537071 384..561 100 -> Minus
arm_2L 8537231..8537598 16..383 100   Minus

BS06281.5prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-03

> BS06281.5prime
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACTGAAAGCTTT
CTAGACC

BS06281.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-PB 627 CG17834-RB 1..627 17..643 3135 100 Plus
CG17834-PD 627 CG17834-RD 1..627 17..643 3135 100 Plus
CG17834-PA 1272 CG17834-RA 1..494 17..510 2470 100 Plus
CG17834-PC 1272 CG17834-RC 1..494 17..510 2470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 1331 CG17834-RF 370..997 17..644 3140 100 Plus
CG17834-RD 1164 CG17834-RD 203..830 17..644 3140 100 Plus
CG17834-RB 1236 CG17834-RB 275..902 17..644 3140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8537229..8537598 275..644 1850 100 Plus
2L 23513712 2L 8536893..8537071 98..276 895 100 Plus
2L 23513712 2L 8536207..8536268 37..98 310 100 Plus
Blast to na_te.dros performed 2015-02-12 13:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6767 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6788 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6809 566..601 117 80.6 Plus
roo 9092 roo DM_ROO 9092bp 1107..1148 560..601 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 564..601 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2858 566..603 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2387 569..627 106 64.4 Plus

BS06281.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:16 Download gff for BS06281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PB 1..627 17..643 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:43 Download gff for BS06281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PD 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:46 Download gff for BS06281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:33 Download gff for BS06281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 9..644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:33 Download gff for BS06281.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8536207..8536268 37..98 100 -> Plus
2L 8536894..8537071 99..276 100 -> Plus
2L 8537231..8537598 277..644 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:46 Download gff for BS06281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8536207..8536268 37..98 100 -> Plus
arm_2L 8536894..8537071 99..276 100 -> Plus
arm_2L 8537231..8537598 277..644 100   Plus

BS06281.complete Sequence

659 bp (659 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635429

> BS06281.complete
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACTGAAAGCTTT
CTAGACCAT

BS06281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 627 CG17834-PF 1..627 17..643 3135 100 Plus
CG17834-RD 627 CG17834-PD 1..627 17..643 3135 100 Plus
CG17834-RB 627 CG17834-PB 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 1331 CG17834-RF 370..997 17..644 3140 100 Plus
CG17834-RD 1164 CG17834-RD 203..830 17..644 3140 100 Plus
CG17834-RB 1236 CG17834-RB 275..902 17..644 3140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8537229..8537598 275..644 1850 100 Plus
2L 23513712 2L 8536893..8537071 98..276 895 100 Plus
2L 23513712 2L 8536207..8536268 37..98 310 100 Plus
Blast to na_te.dros performed 2014-11-27 12:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6767 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6788 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6809 566..601 117 80.6 Plus
roo 9092 roo DM_ROO 9092bp 1107..1148 560..601 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 564..601 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2858 566..603 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2387 569..627 106 64.4 Plus

BS06281.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:37 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RD 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:07 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RD 185..819 9..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:19 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 275..900 17..642 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:37 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RD 185..819 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:27 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 275..900 17..642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:27 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8536060..8536079 17..36 100 -> Plus
2L 8536207..8536268 37..98 100 -> Plus
2L 8536894..8537071 99..276 100 -> Plus
2L 8537231..8537596 277..642 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:19 Download gff for BS06281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8536060..8536079 17..36 100 -> Plus
arm_2L 8536207..8536268 37..98 100 -> Plus
arm_2L 8536894..8537071 99..276 100 -> Plus
arm_2L 8537231..8537596 277..642 100   Plus

BS06281.pep Sequence

Translation from 16 to 642

> BS06281.pep
MCRCCQNCWEDFYWNCFEERFCYDESIANYNPEEDEDYLASRKNGQIIGR
IQPTSVDNNNSLTVPQPICDQPQMRQGNSSLGLSLMSAKIHEEDYRRETQ
INVPNLGPEILAVFANSQIFQDHQPTKLNRISTKTYLAGIHSPNREMPTT
PRLSDQDRLLRRLEGNDGPSGAHTPLLGGAANGKSSGKSTRSSSIVSSGV
PKVKFYLN*

BS06281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-PF 208 CG17834-PF 1..208 1..208 1117 100 Plus
CG17834-PD 208 CG17834-PD 1..208 1..208 1117 100 Plus
CG17834-PB 208 CG17834-PB 1..208 1..208 1117 100 Plus
CG17834-PE 423 CG17834-PE 1..166 1..166 899 99.4 Plus
CG17834-PC 423 CG17834-PC 1..166 1..166 899 99.4 Plus