Clone Sequence Records
BS06282.3prime Sequence
912 bp (762 high quality bases) assembled on 2005-12-03
> BS06282.3prime
ATGGTCTAGAAAGCTTCTAAACGGCTGGCTTCTTCGGCAGCGATCCAAAG
GCGGAAATGACAGTGCCCTTGGTGCCCGTAACCGTGGTGGTTAGAGCCGG
AAGAGTGGTCTTAACAACGGTTGACGAAGGTGCCGGTTGATCCCACTTGG
ATTTGCGCTTTTTGGCCTCCTCCTCGACTTTCCGGGCCAACGCAGTGGCC
TGCTCCACCTTGTCCATGTCCTTGCGATCTTTCTGCCGCTTCACCATCTC
CGTTTTCTGGACCGCCGCCAAGGACTCGTAATAGGACTCCTCGCCCCACT
GCAAAGGATCATAGATCTCGGGCGGATAGTTGGTACCGAACTCGTTGATG
TCGCAAAAGCTTATTAGTTTGTCATATATGCTGGGATTGCGAAATTCCTT
GCGATCCTGTATTACGCGATTCATGTCCATATTGGTCTGGTTCATCTTTG
TGTACATTTTAGTGATTTTGGCCACTAATTCGGCGGACGGCTTCCCCTTT
GGCTCGGGTGGCAGCTGGAACTTGTACTTGGCGTACTTGGCATCCTTTTC
GTAGCTCTCAGCCGTGCGTTCTTCGACCGGGAAACATGCCGGCTCCTCGT
CCACCTCCATGGGCGTGTCCCCGTCCTTGGAACCACTACCAGCATTGCTT
TTATCCTTGGCTTTGGGACTGTCTTCGCTCTGGGAATTGGAACTATTGCT
CTCGTCGCCACTGCTGGACTCCTCTTCACTAGAGGACGCTGCGGCGCGGT
CCTCGTCCTCGTCAGAAATCANGGTGTCATCCTGGTAGCTCACCAACCGA
CGCACCTTCTTGGCCCGCTTCTTTTTCTTCTCCTTAGATCGCTTGCTTTC
TTCGTCCTGTTTGGTGGGCGTCGGCGTGGGTCGCTTGGGCGGTATGATTA
CCAGGGACGCCG
BS06282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-PA | 978 | CG2063-RA | 83..978 | 912..17 | 4461 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 1195 | CG2063-RA | 210..1106 | 912..16 | 4474 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9285603..9286353 | 156..906 | 3729 | 99.7 | Plus |
2R | 25286936 | 2R | 9285399..9285539 | 16..156 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:34:15 has no hits.
BS06282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:17 Download gff for
BS06282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 83..978 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:44 Download gff for
BS06282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 83..978 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:43 Download gff for
BS06282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 210..1111 | 7..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:32 Download gff for
BS06282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 210..1111 | 7..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:32 Download gff for
BS06282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9285394..9285538 | 7..155 | 97 | <- | Plus |
2R | 9285603..9286353 | 156..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:43 Download gff for
BS06282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5172899..5173043 | 7..155 | 97 | <- | Plus |
arm_2R | 5173108..5173858 | 156..906 | 99 | | Plus |
BS06282.5prime Sequence
890 bp (807 high quality bases) assembled on 2005-12-03
> BS06282.5prime
GAAGTTATCAGTCGACATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACA
CGGATTCCGAGAACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACG
GCGTCCCTGGTAATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAA
ACAGGACGAAGAAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCA
AGAAGGTGCGTCGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGAC
GAGGACGAGGACCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAG
TGGCGACGAGAGCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAG
CCAAGGATAAAAGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCC
ATGGAGGTGGACGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGC
TGAGAGCTACGAAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGC
CACCCGAGCCAAAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACT
AAAATGTACACAAAGATGAACCAGACCAATATGGACATGAATCGCGTAAT
ACAGGATCGCAAGGAATTTCGCAATCCCAGCATATATGACAAACTAATAA
GCTTTTGCGACATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTAT
GATCCTTTGCAGTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGT
CCAGAAAACGGAGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACA
AGGTGGAGCAGGCCACTGCGTTGGCCCGGAAAGTCGAGGAGGAGGCCAAA
AAGCGCAAATCCAAGTGGGATCAACCGGCACCTTCGTCAC
BS06282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-PA | 978 | CG2063-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 1195 | CG2063-RA | 128..1000 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9285603..9286353 | 855..105 | 3740 | 99.9 | Minus |
2R | 25286936 | 2R | 9286413..9286507 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:56:42 has no hits.
BS06282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:17 Download gff for
BS06282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:46 Download gff for
BS06282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:02 Download gff for
BS06282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 121..1000 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:35 Download gff for
BS06282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 121..1000 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:35 Download gff for
BS06282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9285503..9285538 | 856..890 | 97 | <- | Minus |
2R | 9285603..9286348 | 110..855 | 100 | <- | Minus |
2R | 9286415..9286514 | 9..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:02 Download gff for
BS06282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5173008..5173043 | 856..890 | 97 | <- | Minus |
arm_2R | 5173108..5173853 | 110..855 | 100 | <- | Minus |
arm_2R | 5173920..5174019 | 9..109 | 96 | | Minus |
BS06282.complete Sequence
1010 bp (1010 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635430
> BS06282.complete
GAAGTTATCAGTCGACATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACA
CGGATTCCGAGAACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACG
GCGTCCCTGGTAATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAA
ACAGGACGAAGAAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCA
AGAAGGTGCGTCGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGAC
GAGGACGAGGACCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAG
TGGCGACGAGAGCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAG
CCAAGGATAAAAGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCC
ATGGAGGTGGACGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGC
TGAGAGCTACGAAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGC
CACCCGAGCCAAAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACT
AAAATGTACACAAAGATGAACCAGACCAATATGGACATGAATCGCGTAAT
ACAGGATCGCAAGGAATTTCGCAATCCCAGCATATATGACAAACTAATAA
GCTTTTGCGACATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTAT
GATCCTTTGCAGTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGT
CCAGAAAACGGAGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACA
AGGTGGAGCAGGCCACTGCGTTGGCCCGGAAAGTCGAGGAGGAGGCCAAA
AAGCGCAAATCCAAGTGGGATCAACCGGCACCTTCGTCAACCGTTGTTAA
GACCACTCTTCCGGCTCTAACCACCACGGTTACGGGCACCAAGGGCACTG
TCATTTCCGCCTTTGGATCGCTGCCGAAGAAGCCAGCCGTTTAGAAGCTT
TCTAGACCAT
BS06282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 978 | CG2063-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 1195 | CG2063-RA | 128..1106 | 17..995 | 4895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9285603..9286353 | 855..105 | 3740 | 99.9 | Minus |
2R | 25286936 | 2R | 9285399..9285539 | 995..855 | 705 | 100 | Minus |
2R | 25286936 | 2R | 9286413..9286507 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:01 has no hits.
BS06282.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:38 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 1..978 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:08 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 116..1106 | 9..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:05 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 128..1105 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:38 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 116..1106 | 9..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:12 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 128..1105 | 17..994 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:12 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9285400..9285538 | 856..994 | 100 | <- | Minus |
2R | 9285603..9286348 | 110..855 | 100 | <- | Minus |
2R | 9286415..9286507 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:05 Download gff for
BS06282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5172905..5173043 | 856..994 | 100 | <- | Minus |
arm_2R | 5173108..5173853 | 110..855 | 100 | <- | Minus |
arm_2R | 5173920..5174012 | 17..109 | 100 | | Minus |
BS06282.pep Sequence
Translation from 16 to 993
> BS06282.pep
MAALASLTAQYTDSENEGDASPDSQNSTASLVIIPPKRPTPTPTKQDEES
KRSKEKKKKRAKKVRRLVSYQDDTLISDEDEDRAAASSSEEESSSGDESN
SSNSQSEDSPKAKDKSNAGSGSKDGDTPMEVDEEPACFPVEERTAESYEK
DAKYAKYKFQLPPEPKGKPSAELVAKITKMYTKMNQTNMDMNRVIQDRKE
FRNPSIYDKLISFCDINEFGTNYPPEIYDPLQWGEESYYESLAAVQKTEM
VKRQKDRKDMDKVEQATALARKVEEEAKKRKSKWDQPAPSSTVVKTTLPA
LTTTVTGTKGTVISAFGSLPKKPAV*
BS06282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-PA | 325 | CG2063-PA | 1..325 | 1..325 | 1662 | 100 | Plus |