Clone BS06282 Report

Search the DGRC for BS06282

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG2063-RA
Protein status:BS06282.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06282.3prime Sequence

912 bp (762 high quality bases) assembled on 2005-12-03

> BS06282.3prime
ATGGTCTAGAAAGCTTCTAAACGGCTGGCTTCTTCGGCAGCGATCCAAAG
GCGGAAATGACAGTGCCCTTGGTGCCCGTAACCGTGGTGGTTAGAGCCGG
AAGAGTGGTCTTAACAACGGTTGACGAAGGTGCCGGTTGATCCCACTTGG
ATTTGCGCTTTTTGGCCTCCTCCTCGACTTTCCGGGCCAACGCAGTGGCC
TGCTCCACCTTGTCCATGTCCTTGCGATCTTTCTGCCGCTTCACCATCTC
CGTTTTCTGGACCGCCGCCAAGGACTCGTAATAGGACTCCTCGCCCCACT
GCAAAGGATCATAGATCTCGGGCGGATAGTTGGTACCGAACTCGTTGATG
TCGCAAAAGCTTATTAGTTTGTCATATATGCTGGGATTGCGAAATTCCTT
GCGATCCTGTATTACGCGATTCATGTCCATATTGGTCTGGTTCATCTTTG
TGTACATTTTAGTGATTTTGGCCACTAATTCGGCGGACGGCTTCCCCTTT
GGCTCGGGTGGCAGCTGGAACTTGTACTTGGCGTACTTGGCATCCTTTTC
GTAGCTCTCAGCCGTGCGTTCTTCGACCGGGAAACATGCCGGCTCCTCGT
CCACCTCCATGGGCGTGTCCCCGTCCTTGGAACCACTACCAGCATTGCTT
TTATCCTTGGCTTTGGGACTGTCTTCGCTCTGGGAATTGGAACTATTGCT
CTCGTCGCCACTGCTGGACTCCTCTTCACTAGAGGACGCTGCGGCGCGGT
CCTCGTCCTCGTCAGAAATCANGGTGTCATCCTGGTAGCTCACCAACCGA
CGCACCTTCTTGGCCCGCTTCTTTTTCTTCTCCTTAGATCGCTTGCTTTC
TTCGTCCTGTTTGGTGGGCGTCGGCGTGGGTCGCTTGGGCGGTATGATTA
CCAGGGACGCCG

BS06282.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-PA 978 CG2063-RA 83..978 912..17 4461 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-RA 1195 CG2063-RA 210..1106 912..16 4474 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9285603..9286353 156..906 3729 99.7 Plus
2R 25286936 2R 9285399..9285539 16..156 705 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:34:15 has no hits.

BS06282.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:17 Download gff for BS06282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-PA 83..978 17..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:44 Download gff for BS06282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-PA 83..978 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:43 Download gff for BS06282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 210..1111 7..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:32 Download gff for BS06282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 210..1111 7..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:32 Download gff for BS06282.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9285394..9285538 7..155 97 <- Plus
2R 9285603..9286353 156..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:43 Download gff for BS06282.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5172899..5173043 7..155 97 <- Plus
arm_2R 5173108..5173858 156..906 99   Plus

BS06282.5prime Sequence

890 bp (807 high quality bases) assembled on 2005-12-03

> BS06282.5prime
GAAGTTATCAGTCGACATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACA
CGGATTCCGAGAACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACG
GCGTCCCTGGTAATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAA
ACAGGACGAAGAAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCA
AGAAGGTGCGTCGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGAC
GAGGACGAGGACCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAG
TGGCGACGAGAGCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAG
CCAAGGATAAAAGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCC
ATGGAGGTGGACGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGC
TGAGAGCTACGAAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGC
CACCCGAGCCAAAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACT
AAAATGTACACAAAGATGAACCAGACCAATATGGACATGAATCGCGTAAT
ACAGGATCGCAAGGAATTTCGCAATCCCAGCATATATGACAAACTAATAA
GCTTTTGCGACATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTAT
GATCCTTTGCAGTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGT
CCAGAAAACGGAGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACA
AGGTGGAGCAGGCCACTGCGTTGGCCCGGAAAGTCGAGGAGGAGGCCAAA
AAGCGCAAATCCAAGTGGGATCAACCGGCACCTTCGTCAC

BS06282.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-PA 978 CG2063-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-RA 1195 CG2063-RA 128..1000 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9285603..9286353 855..105 3740 99.9 Minus
2R 25286936 2R 9286413..9286507 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:56:42 has no hits.

BS06282.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:17 Download gff for BS06282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-PA 1..873 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:46 Download gff for BS06282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-PA 1..873 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:02 Download gff for BS06282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 121..1000 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:35 Download gff for BS06282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 121..1000 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:35 Download gff for BS06282.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9285503..9285538 856..890 97 <- Minus
2R 9285603..9286348 110..855 100 <- Minus
2R 9286415..9286514 9..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:02 Download gff for BS06282.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5173008..5173043 856..890 97 <- Minus
arm_2R 5173108..5173853 110..855 100 <- Minus
arm_2R 5173920..5174019 9..109 96   Minus

BS06282.complete Sequence

1010 bp (1010 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635430

> BS06282.complete
GAAGTTATCAGTCGACATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACA
CGGATTCCGAGAACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACG
GCGTCCCTGGTAATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAA
ACAGGACGAAGAAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCA
AGAAGGTGCGTCGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGAC
GAGGACGAGGACCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAG
TGGCGACGAGAGCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAG
CCAAGGATAAAAGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCC
ATGGAGGTGGACGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGC
TGAGAGCTACGAAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGC
CACCCGAGCCAAAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACT
AAAATGTACACAAAGATGAACCAGACCAATATGGACATGAATCGCGTAAT
ACAGGATCGCAAGGAATTTCGCAATCCCAGCATATATGACAAACTAATAA
GCTTTTGCGACATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTAT
GATCCTTTGCAGTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGT
CCAGAAAACGGAGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACA
AGGTGGAGCAGGCCACTGCGTTGGCCCGGAAAGTCGAGGAGGAGGCCAAA
AAGCGCAAATCCAAGTGGGATCAACCGGCACCTTCGTCAACCGTTGTTAA
GACCACTCTTCCGGCTCTAACCACCACGGTTACGGGCACCAAGGGCACTG
TCATTTCCGCCTTTGGATCGCTGCCGAAGAAGCCAGCCGTTTAGAAGCTT
TCTAGACCAT

BS06282.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-RA 978 CG2063-PA 1..978 17..994 4890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-RA 1195 CG2063-RA 128..1106 17..995 4895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9285603..9286353 855..105 3740 99.9 Minus
2R 25286936 2R 9285399..9285539 995..855 705 100 Minus
2R 25286936 2R 9286413..9286507 111..17 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:32:01 has no hits.

BS06282.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:38 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 1..978 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:08 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 116..1106 9..1004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:05 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 128..1105 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:38 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 116..1106 9..1004 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:12 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 128..1105 17..994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:12 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9285400..9285538 856..994 100 <- Minus
2R 9285603..9286348 110..855 100 <- Minus
2R 9286415..9286507 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:05 Download gff for BS06282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5172905..5173043 856..994 100 <- Minus
arm_2R 5173108..5173853 110..855 100 <- Minus
arm_2R 5173920..5174012 17..109 100   Minus

BS06282.pep Sequence

Translation from 16 to 993

> BS06282.pep
MAALASLTAQYTDSENEGDASPDSQNSTASLVIIPPKRPTPTPTKQDEES
KRSKEKKKKRAKKVRRLVSYQDDTLISDEDEDRAAASSSEEESSSGDESN
SSNSQSEDSPKAKDKSNAGSGSKDGDTPMEVDEEPACFPVEERTAESYEK
DAKYAKYKFQLPPEPKGKPSAELVAKITKMYTKMNQTNMDMNRVIQDRKE
FRNPSIYDKLISFCDINEFGTNYPPEIYDPLQWGEESYYESLAAVQKTEM
VKRQKDRKDMDKVEQATALARKVEEEAKKRKSKWDQPAPSSTVVKTTLPA
LTTTVTGTKGTVISAFGSLPKKPAV*

BS06282.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-PA 325 CG2063-PA 1..325 1..325 1662 100 Plus