Clone BS06286 Report

Search the DGRC for BS06286

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG8300-RA
Protein status:BS06286.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06286.3prime Sequence

588 bp (587 high quality bases) assembled on 2005-12-03

> BS06286.3prime
ATGGTCTAGAAAGCTTCTACTGCCGTGTGGGTGGCAAGGTCGCCTCGCTG
CGTGTTGGTTCGCATAGGACGATGGTTTCGTTGCGATTGTTGTTGCCGCT
GCTGTTGTTGTTGCTGCTACTGGTCGTGGTCGACATGGCCCGCGGGTGCC
AATTGTCAAGGTCCTCGTCGCCGTGCTCCTTGGCCCTGTGGTAGTTCTCC
AATTCGCTGGCATACTTGCTGCTGGTGATACCAAGCAGGTGGGCCAGCCC
ACCGCCCACATAGTCGATGCCGGCCAGGAATCGGTTGCCCATCCTGCTGG
CCTTGTAACGCAGGCGTGGTCCCAGCGGCATTTCGCTCTCGTTTAAATGG
ACGTCGTAGCATTTGTCGCCCATTTCCGCATCCGCCTCGTCCTCGCTGCC
CGAGGACAACTCCTCCATGACGCCGTCGCTAAAGTACAGCATGCGCTTGT
TGGACTGCAGTTCAAGGGCGCTCACATTGTCCGTCTCGGATGCACTTGCT
CCACTCGCAGATGCCAGTTCCAATCCTCCAGCTGCACTGCGTACTTCGCC
ACTCTTGTTCCTCTCCGCTGACATGTCGACTGATAACT

BS06286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-PA 558 CG8300-RA 1..558 574..17 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 1060 CG8300-RA 271..829 575..17 2795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7105792..7106114 339..17 1615 100 Minus
X 23542271 X 7105155..7105392 575..338 1190 100 Minus
Blast to na_te.dros performed 2015-02-03 13:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2562 130..20 175 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2682..2914 241..18 169 57.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2524..2682 229..71 166 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6881 231..71 158 60.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6884 130..13 154 63.3 Minus
roo 9092 roo DM_ROO 9092bp 1056..1107 133..82 152 76.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1605 118..53 150 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2421 124..13 149 63.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6815 130..47 149 67.1 Minus
roo 9092 roo DM_ROO 9092bp 1104..1163 130..71 147 71.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6819..6881 130..68 144 69.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2395 132..53 143 67.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6830 130..51 141 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2452 232..53 139 57.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6772 130..87 139 79.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2838 124..74 138 74.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6796 118..45 135 68 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1612 130..71 130 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6751 119..87 129 87.9 Minus
roo 9092 roo DM_ROO 9092bp 1110..1178 121..53 129 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2626 136..88 121 74 Minus
TART-A 13424 TART-A 13424bp 897..942 134..90 119 76.1 Minus
TART-A 13424 TART-A 13424bp 12075..12120 134..90 119 76.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1591 116..39 118 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2438..2475 117..80 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1546..1599 130..77 117 68.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5649..5720 113..39 114 68.4 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 529..580 115..62 112 70.4 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 979..1011 130..98 111 81.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6920 231..80 110 55.8 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 151..200 123..77 108 72 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9181..9230 123..77 108 72 Minus

BS06286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:24 Download gff for BS06286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 17..574 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:56 Download gff for BS06286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 17..574 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:59 Download gff for BS06286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 13..588 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:06 Download gff for BS06286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 13..588 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:06 Download gff for BS06286.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7105142..7105392 338..588 98 -> Minus
X 7105794..7106116 13..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:59 Download gff for BS06286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6999175..6999425 338..588 98 -> Minus
arm_X 6999827..7000149 13..337 99   Minus

BS06286.5prime Sequence

588 bp (587 high quality bases) assembled on 2005-12-03

> BS06286.5prime
GAAGTTATCAGTCGACATGTCAGCGGAGAGGAACAAGAGTGGCGAAGTAC
GCAGTGCAGCTGGAGGATTGGAACTGGCATCTGCGAGTGGAGCAAGTGCA
TCCGAGACGGACAATGTGAGCGCCCTTGAACTGCAGTCCAACAAGCGCAT
GCTGTACTTTAGCGACGGCGTCATGGAGGAGTTGTCCTCGGGCAGCGAGG
ACGAGGCGGATGCGGAAATGGGCGACAAATGCTACGACGTCCATTTAAAC
GAGAGCGAAATGCCGCTGGGACCACGCCTGCGTTACAAGGCCAGCAGGAT
GGGCAACCGATTCCTGGCCGGCATCGACTATGTGGGCGGTGGGCTGGCCC
ACCTGCTTGGTATCACCAGCAGCAAGTATGCCAGCGAATTGGAGAACTAC
CACAGGGCCAAGGAGCACGGCGACGAGGACCTTGACAATTGGCACCCGCG
GGCCATGTCGACCACGACCAGTAGCAGCAACAACAACAGCAGCGGCAACA
ACAATCGCAACGAAACCATCGTCCTATGCGAACCAACACGCAGCGAGGCG
ACCTTGCCACCCACACGGCAGTAGAAGCTTTCTAGACC

BS06286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-PA 558 CG8300-RA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 1060 CG8300-RA 271..829 16..574 2795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7105792..7106114 252..574 1615 100 Plus
X 23542271 X 7105155..7105392 16..253 1190 100 Plus
Blast to na_te.dros performed 2015-02-11 16:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2562 461..571 175 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2682..2914 350..573 169 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2524..2682 362..520 166 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6881 360..520 158 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6884 461..578 154 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1056..1107 458..509 152 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1605 473..538 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2421 467..578 149 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6815 461..544 149 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1104..1163 461..520 147 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6819..6881 461..523 144 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2395 459..538 143 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6830 461..540 141 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2452 359..538 139 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6772 461..504 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2838 467..517 138 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6796 473..546 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1612 461..520 130 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6751 472..504 129 87.9 Plus
roo 9092 roo DM_ROO 9092bp 1110..1178 470..538 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2626 455..503 121 74 Plus
TART-A 13424 TART-A 13424bp 897..942 457..501 119 76.1 Plus
TART-A 13424 TART-A 13424bp 12075..12120 457..501 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1591 475..552 118 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2438..2475 474..511 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1546..1599 461..514 117 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5649..5720 478..552 114 68.4 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 529..580 476..529 112 70.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 979..1011 461..493 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6920 360..511 110 55.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 151..200 468..514 108 72 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9181..9230 468..514 108 72 Plus

BS06286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:25 Download gff for BS06286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 17..574 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:13:57 Download gff for BS06286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:34:21 Download gff for BS06286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 3..578 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:39 Download gff for BS06286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 3..578 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:39 Download gff for BS06286.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7105142..7105392 3..253 98 -> Plus
X 7105794..7106116 254..578 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:34:21 Download gff for BS06286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6999175..6999425 3..253 98 -> Plus
arm_X 6999827..7000149 254..578 99   Plus

BS06286.complete Sequence

590 bp (590 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635431

> BS06286.complete
GAAGTTATCAGTCGACATGTCAGCGGAGAGGAACAAGAGTGGCGAAGTAC
GCAGTGCAGCTGGAGGATTGGAACTGGCATCTGCGAGTGGAGCAAGTGCA
TCCGAGACGGACAATGTGAGCGCCCTTGAACTGCAGTCCAACAAGCGCAT
GCTGTACTTTAGCGACGGCGTCATGGAGGAGTTGTCCTCGGGCAGCGAGG
ACGAGGCGGATGCGGAAATGGGCGACAAATGCTACGACGTCCATTTAAAC
GAGAGCGAAATGCCGCTGGGACCACGCCTGCGTTACAAGGCCAGCAGGAT
GGGCAACCGATTCCTGGCCGGCATCGACTATGTGGGCGGTGGGCTGGCCC
ACCTGCTTGGTATCACCAGCAGCAAGTATGCCAGCGAATTGGAGAACTAC
CACAGGGCCAAGGAGCACGGCGACGAGGACCTTGACAATTGGCACCCGCG
GGCCATGTCGACCACGACCAGTAGCAGCAACAACAACAGCAGCGGCAACA
ACAATCGCAACGAAACCATCGTCCTATGCGAACCAACACGCAGCGAGGCG
ACCTTGCCACCCACACGGCAGTAGAAGCTTTCTAGACCAT

BS06286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 558 CG8300-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 1060 CG8300-RA 271..829 16..574 2795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7105792..7106114 252..574 1615 100 Plus
X 23542271 X 7105155..7105392 16..253 1190 100 Plus
Blast to na_te.dros performed 2014-11-27 20:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2562 461..571 175 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2682..2914 350..573 169 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2524..2682 362..520 166 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6881 360..520 158 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6884 461..578 154 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1056..1107 458..509 152 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1605 473..538 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2421 467..578 149 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6815 461..544 149 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1104..1163 461..520 147 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6819..6881 461..523 144 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2395 459..538 143 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6830 461..540 141 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6772 461..504 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2452 359..538 139 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2838 467..517 138 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6796 473..546 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1612 461..520 130 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6751 472..504 129 87.9 Plus
roo 9092 roo DM_ROO 9092bp 1110..1178 470..538 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2626 455..503 121 74 Plus
TART-A 13424 TART-A 13424bp 897..942 457..501 119 76.1 Plus
TART-A 13424 TART-A 13424bp 12075..12120 457..501 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1591 475..552 118 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2438..2475 474..511 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1546..1599 461..514 117 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5649..5720 478..552 114 68.4 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 529..580 476..529 112 70.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 979..1011 461..493 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6920 360..511 110 55.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 151..200 468..514 108 72 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9181..9230 468..514 108 72 Plus

BS06286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:35 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:01 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 243..816 3..578 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:58 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 272..829 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:35 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 243..816 3..578 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:15 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 272..829 17..574 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:15 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
X 7105794..7106114 254..574 100   Plus
X 7105156..7105392 17..253 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:58 Download gff for BS06286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6999189..6999425 17..253 100 -> Plus
arm_X 6999827..7000147 254..574 100   Plus

BS06286.pep Sequence

Translation from 16 to 573

> BS06286.pep
MSAERNKSGEVRSAAGGLELASASGASASETDNVSALELQSNKRMLYFSD
GVMEELSSGSEDEADAEMGDKCYDVHLNESEMPLGPRLRYKASRMGNRFL
AGIDYVGGGLAHLLGITSSKYASELENYHRAKEHGDEDLDNWHPRAMSTT
TSSSNNNSSGNNNRNETIVLCEPTRSEATLPPTRQ*

BS06286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-PA 185 CG8300-PA 1..185 1..185 952 100 Plus