Clone Sequence Records
BS06288.3prime Sequence
717 bp (716 high quality bases) assembled on 2005-12-03
> BS06288.3prime
ATGGTCTAGAAAGCTTTTAATCATCCTTGTTTCCGCCTCCGCCGATGGTT
ATCTTCTTCTGCAGCTTGCTGTACTCCTCGGTGAGTCGGTCGTACTCGCG
GTTGATGCTCTCCGCCTGCGACTTAACCGCCTCCTTGTCCTTCTTTTCGC
GATTCAAGTCGGAGGTTAGCTCCTGGACGCGCTCGCGCAGCTTGTTGAGC
TCGATGAGAGTGGTATCCTCGCCGGCTTCCTTGGCCTTCTCGGTGTTCTT
GTTCTCCAGCAAGGAACGTGCGGCTGCAGTGGCGCTCTGTGCCTGCTTGA
AGGAAGCCTCGCTCTGGGCCATGAGATTGGCCTGGGTGCAGATCAAGTTT
ACCAGTCGCCGGATGACCAGGGCAAGGAAAATGGCGAATCCAGAGATGTA
GAAGTTCCGCTGGGCACGGAACAGCTTCATGCTGTGCTGCATCTCCACGT
TCAAGTGGACCTCGTTAGACTGCTGCAAGCCGGAGTACTTGCGCATCTCG
CGAATGGCCTCCAGGAGGAAAATGACCAGAATTCCCATGATCAGCAGGAA
ATATATGTGCGCCTGTTGTCCCAACATCGATAGGAATTTGGACTTGAAGA
ACCGGTTCCAGCGGTAAGGAGTGAGCACCGGCAGCACCAGCAGAAGGACC
AGTGCGATTTCCGCATAGAGAAATCCGGCGATCAAAGTCCACACCAAACT
CATGTCGACTGATAACT
BS06288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-PC | 687 | CG13887-RC | 1..687 | 703..17 | 3435 | 100 | Minus |
CG13887-PB | 687 | CG13887-RB | 1..687 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 1446 | CG13887-RE | 261..948 | 703..16 | 3440 | 100 | Minus |
CG13887-RB | 1262 | CG13887-RB | 261..948 | 703..16 | 3440 | 100 | Minus |
CG13887-RC | 1159 | CG13887-RC | 158..845 | 703..16 | 3440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 838121..838624 | 703..200 | 2520 | 100 | Minus |
3L | 28110227 | 3L | 839248..839433 | 201..16 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:47:17 has no hits.
BS06288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:28 Download gff for
BS06288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:00 Download gff for
BS06288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:41 Download gff for
BS06288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 8..711 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:20 Download gff for
BS06288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 8..711 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:20 Download gff for
BS06288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 838113..838624 | 200..711 | 99 | -> | Minus |
3L | 839250..839439 | 8..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:41 Download gff for
BS06288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 838113..838624 | 200..711 | 99 | -> | Minus |
arm_3L | 839250..839439 | 8..199 | 97 | | Minus |
BS06288.5prime Sequence
717 bp (716 high quality bases) assembled on 2005-12-03
> BS06288.5prime
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
TAAAAGCTTTCTAGACC
BS06288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-PC | 687 | CG13887-RC | 1..687 | 17..703 | 3435 | 100 | Plus |
CG13887-PB | 687 | CG13887-RB | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 1446 | CG13887-RE | 261..948 | 17..704 | 3440 | 100 | Plus |
CG13887-RB | 1262 | CG13887-RB | 261..948 | 17..704 | 3440 | 100 | Plus |
CG13887-RC | 1159 | CG13887-RC | 158..845 | 17..704 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 838121..838624 | 17..520 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 839248..839433 | 519..704 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:56:34 has no hits.
BS06288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:29 Download gff for
BS06288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:02 Download gff for
BS06288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:00 Download gff for
BS06288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 9..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:07 Download gff for
BS06288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 9..712 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:07 Download gff for
BS06288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 838113..838624 | 9..520 | 99 | -> | Plus |
3L | 839250..839439 | 521..712 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:00 Download gff for
BS06288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 838113..838624 | 9..520 | 99 | -> | Plus |
arm_3L | 839250..839439 | 521..712 | 97 | | Plus |
BS06288.complete Sequence
719 bp (719 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635432
> BS06288.complete
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
TAAAAGCTTTCTAGACCAT
BS06288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 687 | CG13887-PE | 1..687 | 17..703 | 3435 | 100 | Plus |
CG13887-RB | 687 | CG13887-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
CG13887-RC | 687 | CG13887-PC | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 1446 | CG13887-RE | 261..948 | 17..704 | 3440 | 100 | Plus |
CG13887-RB | 1262 | CG13887-RB | 261..948 | 17..704 | 3440 | 100 | Plus |
CG13887-RC | 1159 | CG13887-RC | 158..845 | 17..704 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 838121..838624 | 17..520 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 839248..839433 | 519..704 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:01:36 has no hits.
BS06288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:39 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:10 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RB | 257..958 | 9..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:39 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 158..842 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:40 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RB | 257..958 | 9..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:11 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 158..842 | 17..701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:11 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 838121..838624 | 17..520 | 100 | -> | Plus |
3L | 839250..839430 | 521..701 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:39 Download gff for
BS06288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 838121..838624 | 17..520 | 100 | -> | Plus |
arm_3L | 839250..839430 | 521..701 | 100 | | Plus |
BS06288.pep Sequence
Translation from 16 to 702
> BS06288.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESI
NREYDRLTEEYSKLQKKITIGGGGNKDD*
BS06288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-PE | 228 | CG13887-PE | 1..228 | 1..228 | 1128 | 100 | Plus |
CG13887-PB | 228 | CG13887-PB | 1..228 | 1..228 | 1128 | 100 | Plus |
CG13887-PC | 228 | CG13887-PC | 1..228 | 1..228 | 1128 | 100 | Plus |
CG13887-PD | 184 | CG13887-PD | 1..181 | 1..181 | 866 | 97.2 | Plus |