Clone BS06288 Report

Search the DGRC for BS06288

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG13887-RB
Protein status:BS06288.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06288.3prime Sequence

717 bp (716 high quality bases) assembled on 2005-12-03

> BS06288.3prime
ATGGTCTAGAAAGCTTTTAATCATCCTTGTTTCCGCCTCCGCCGATGGTT
ATCTTCTTCTGCAGCTTGCTGTACTCCTCGGTGAGTCGGTCGTACTCGCG
GTTGATGCTCTCCGCCTGCGACTTAACCGCCTCCTTGTCCTTCTTTTCGC
GATTCAAGTCGGAGGTTAGCTCCTGGACGCGCTCGCGCAGCTTGTTGAGC
TCGATGAGAGTGGTATCCTCGCCGGCTTCCTTGGCCTTCTCGGTGTTCTT
GTTCTCCAGCAAGGAACGTGCGGCTGCAGTGGCGCTCTGTGCCTGCTTGA
AGGAAGCCTCGCTCTGGGCCATGAGATTGGCCTGGGTGCAGATCAAGTTT
ACCAGTCGCCGGATGACCAGGGCAAGGAAAATGGCGAATCCAGAGATGTA
GAAGTTCCGCTGGGCACGGAACAGCTTCATGCTGTGCTGCATCTCCACGT
TCAAGTGGACCTCGTTAGACTGCTGCAAGCCGGAGTACTTGCGCATCTCG
CGAATGGCCTCCAGGAGGAAAATGACCAGAATTCCCATGATCAGCAGGAA
ATATATGTGCGCCTGTTGTCCCAACATCGATAGGAATTTGGACTTGAAGA
ACCGGTTCCAGCGGTAAGGAGTGAGCACCGGCAGCACCAGCAGAAGGACC
AGTGCGATTTCCGCATAGAGAAATCCGGCGATCAAAGTCCACACCAAACT
CATGTCGACTGATAACT

BS06288.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PC 687 CG13887-RC 1..687 703..17 3435 100 Minus
CG13887-PB 687 CG13887-RB 1..687 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 1446 CG13887-RE 261..948 703..16 3440 100 Minus
CG13887-RB 1262 CG13887-RB 261..948 703..16 3440 100 Minus
CG13887-RC 1159 CG13887-RC 158..845 703..16 3440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 703..200 2520 100 Minus
3L 28110227 3L 839248..839433 201..16 930 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:47:17 has no hits.

BS06288.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:28 Download gff for BS06288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 17..703 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:00 Download gff for BS06288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:41 Download gff for BS06288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 8..711 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:20 Download gff for BS06288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 8..711 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:20 Download gff for BS06288.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 838113..838624 200..711 99 -> Minus
3L 839250..839439 8..199 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:41 Download gff for BS06288.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838113..838624 200..711 99 -> Minus
arm_3L 839250..839439 8..199 97   Minus

BS06288.5prime Sequence

717 bp (716 high quality bases) assembled on 2005-12-03

> BS06288.5prime
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
TAAAAGCTTTCTAGACC

BS06288.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PC 687 CG13887-RC 1..687 17..703 3435 100 Plus
CG13887-PB 687 CG13887-RB 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 1446 CG13887-RE 261..948 17..704 3440 100 Plus
CG13887-RB 1262 CG13887-RB 261..948 17..704 3440 100 Plus
CG13887-RC 1159 CG13887-RC 158..845 17..704 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 17..520 2520 100 Plus
3L 28110227 3L 839248..839433 519..704 930 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:56:34 has no hits.

BS06288.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:29 Download gff for BS06288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:02 Download gff for BS06288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:00 Download gff for BS06288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 9..712 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:07 Download gff for BS06288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 9..712 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:07 Download gff for BS06288.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 838113..838624 9..520 99 -> Plus
3L 839250..839439 521..712 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:00 Download gff for BS06288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838113..838624 9..520 99 -> Plus
arm_3L 839250..839439 521..712 97   Plus

BS06288.complete Sequence

719 bp (719 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635432

> BS06288.complete
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
TAAAAGCTTTCTAGACCAT

BS06288.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 687 CG13887-PE 1..687 17..703 3435 100 Plus
CG13887-RB 687 CG13887-PB 1..687 17..703 3435 100 Plus
CG13887-RC 687 CG13887-PC 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 1446 CG13887-RE 261..948 17..704 3440 100 Plus
CG13887-RB 1262 CG13887-RB 261..948 17..704 3440 100 Plus
CG13887-RC 1159 CG13887-RC 158..845 17..704 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 17..520 2520 100 Plus
3L 28110227 3L 839248..839433 519..704 930 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:01:36 has no hits.

BS06288.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:39 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:10 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 257..958 9..712 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:39 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 158..842 17..701 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:40 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 257..958 9..712 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:11 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 158..842 17..701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:11 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
3L 838121..838624 17..520 100 -> Plus
3L 839250..839430 521..701 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:39 Download gff for BS06288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838121..838624 17..520 100 -> Plus
arm_3L 839250..839430 521..701 100   Plus

BS06288.pep Sequence

Translation from 16 to 702

> BS06288.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESI
NREYDRLTEEYSKLQKKITIGGGGNKDD*

BS06288.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PE 228 CG13887-PE 1..228 1..228 1128 100 Plus
CG13887-PB 228 CG13887-PB 1..228 1..228 1128 100 Plus
CG13887-PC 228 CG13887-PC 1..228 1..228 1128 100 Plus
CG13887-PD 184 CG13887-PD 1..181 1..181 866 97.2 Plus