Clone Sequence Records
BS06290.3prime Sequence
839 bp (838 high quality bases) assembled on 2005-12-03
> BS06290.3prime
ATGGTCTAGAAAGCTTCTAGATGCCAGTGTTAGTCTTGATCCAGTCCAGG
TAGCTGGTCACACGAGTGAAGGCAGCGGGGTAGCCCTTCTCGCAACCGGC
AGAGGCACCGAATGAGGTCAGACCGATCTGCTCGCTGGACGACTTGAGGA
CCAGAGGACCGCCGGAGTCACCGTTGCAGGTGGACTTGGCGTCGGTGGTG
GCCACGCAGAGGGTTGAGTCGGTCACGACCGAGGTGCCGTAGGTTTGGGC
GCACTTGGTGTTGGTGATCACAGTCAGGTCGACATACTGAAGATTGGTAG
CCACACCACTGGAGGTGTCACTGGTGCGTCCCCATCCGGAGGCGACAGCG
ACGTCACCGACGAAGGTCGAGTAGGAGTTGGAGATGCTTGGCAGCTTGAC
GGCGGAGATCCTGCTGCTGGAGGAGGTGGCGGGGATCTTGATCAGGGAGA
TGTCGTTGCGCAGGTTAGCGCTGTTCCAGCCGGAGTGGATGATGATGTCG
GAGCTGGACACGGTGTGGGTGATCTCGGCGGAGGTGCGCACGGTGGCGCC
CAAGTAGACGGTCACGGACTGAACTCCATCGGTACAGTGAGCAGCGGTCA
GGACCCAGGTGCTGCCGATCAGAGAACCACCGCACCAGGCGCTGGACAGA
GCACTCAGCTTCAGGGAAAGTCCCACCTGGTAGGGGAACTGGCCGACGGC
GGCGTTGCTTCCTCCGGTGATGCGACCTCCAATGTCGCCAACGACGGGCA
TCTCGCGGCTGCGATGGCGCAGCTCCGGCTCGGGGAAAGCGGAGGCGGCC
ACAGCCAGGGCAAGGATGATCAGGAACTTCATGTCGACT
BS06290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6467-PA | 816 | Jon65Aiv-RA | 1..816 | 832..17 | 4080 | 100 | Minus |
CG6483-PA | 825 | Jon65Aiii-RA | 765..809 | 71..27 | 150 | 93.3 | Minus |
CG6298-PA | 1239 | Jon74E-RA | 1075..1109 | 181..147 | 150 | 97.1 | Minus |
CG6457-PA | 813 | yip7-RA | 144..171 | 695..668 | 140 | 100 | Minus |
CG10472-PA | 873 | CG10472-RA | 688..725 | 184..147 | 140 | 94.7 | Minus |
CG10477-PA | 819 | CG10477-RA | 374..400 | 462..436 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 904 | CG6467-RA | 42..857 | 832..17 | 4080 | 100 | Minus |
Jon74E-RA | 1452 | CG6298-RA | 1155..1322 | 185..18 | 345 | 81.1 | Minus |
Jon99Ciii-RB | 1240 | CG31362-RB | 210..407 | 637..440 | 240 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6039529..6040088 | 576..17 | 2800 | 100 | Minus |
3L | 28110227 | 3L | 6039196..6039452 | 832..576 | 1285 | 100 | Minus |
3L | 28110227 | 3L | 17546869..17547036 | 18..185 | 345 | 80.4 | Plus |
3L | 28110227 | 3L | 6051486..6051652 | 185..19 | 220 | 75.4 | Minus |
3R | 32079331 | 3R | 29922425..29922622 | 637..440 | 210 | 73.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:04:19 has no hits.
BS06290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:33 Download gff for
BS06290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:06 Download gff for
BS06290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:04 Download gff for
BS06290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..866 | 9..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:12 Download gff for
BS06290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..866 | 9..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:12 Download gff for
BS06290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6039196..6039452 | 576..832 | 100 | -> | Minus |
3L | 6039530..6040097 | 9..575 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:04 Download gff for
BS06290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6032296..6032552 | 576..832 | 100 | -> | Minus |
arm_3L | 6032630..6033197 | 9..575 | 99 | | Minus |
BS06290.5prime Sequence
846 bp (759 high quality bases) assembled on 2005-12-03
> BS06290.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGGATCAGACTAACACTGGCATCTAGAAGCTTTCTAGACC
BS06290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6467-PA | 816 | Jon65Aiv-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG6298-PA | 1239 | Jon74E-RA | 1075..1109 | 668..702 | 150 | 97.1 | Plus |
CG6457-PA | 813 | yip7-RA | 144..171 | 154..181 | 140 | 100 | Plus |
CG10472-PA | 873 | CG10472-RA | 688..725 | 665..702 | 140 | 94.7 | Plus |
CG10477-PA | 819 | CG10477-RA | 374..400 | 387..413 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 904 | CG6467-RA | 42..857 | 17..832 | 4035 | 99.8 | Plus |
Jon99Ciii-RB | 1240 | CG31362-RB | 210..407 | 212..409 | 240 | 76 | Plus |
Jon99Ciii-RA | 837 | CG31362-RA | 210..407 | 212..409 | 240 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6039529..6040088 | 273..832 | 2740 | 99.3 | Plus |
3L | 28110227 | 3L | 6039196..6039452 | 17..273 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 17546892..17547036 | 808..664 | 305 | 80.7 | Minus |
3R | 32079331 | 3R | 29922425..29922622 | 212..409 | 210 | 73.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:47:08 has no hits.
BS06290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:34 Download gff for
BS06290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:08 Download gff for
BS06290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:27 Download gff for
BS06290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..866 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:29 Download gff for
BS06290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..866 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:29 Download gff for
BS06290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6039196..6039452 | 17..273 | 100 | -> | Plus |
3L | 6039530..6040097 | 274..840 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:27 Download gff for
BS06290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6032296..6032552 | 17..273 | 100 | -> | Plus |
arm_3L | 6032630..6033197 | 274..840 | 98 | | Plus |
BS06290.complete Sequence
848 bp (848 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635433
> BS06290.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGATCAAGACTAACACTGGCATCTAGAAGCTTTCTAGACCAT
BS06290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 816 | CG6467-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Jon74E-RA | 1239 | CG6298-PA | 1071..1238 | 664..831 | 345 | 80.4 | Plus |
Jon65Aiii-RA | 825 | CG6483-PA | 651..817 | 664..830 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 904 | CG6467-RA | 42..857 | 17..832 | 4080 | 100 | Plus |
Jon74E-RA | 1452 | CG6298-RA | 1155..1322 | 664..831 | 345 | 80.4 | Plus |
Jon65Aiii-RA | 875 | CG6483-RA | 671..837 | 664..830 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6039529..6040088 | 273..832 | 2800 | 100 | Plus |
3L | 28110227 | 3L | 6039196..6039452 | 17..273 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 17546869..17547036 | 831..664 | 345 | 80.4 | Minus |
3L | 28110227 | 3L | 6051486..6051652 | 664..830 | 220 | 75.4 | Plus |
3R | 32079331 | 3R | 29922425..29922622 | 212..409 | 210 | 73.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:42 has no hits.
BS06290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:41 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:12 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 40..864 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:11 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..857 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:41 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 40..864 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:23 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..857 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:23 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6039196..6039452 | 17..273 | 100 | -> | Plus |
3L | 6039530..6040088 | 274..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:11 Download gff for
BS06290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6032296..6032552 | 17..273 | 100 | -> | Plus |
arm_3L | 6032630..6033188 | 274..832 | 100 | | Plus |
BS06290.pep Sequence
Translation from 16 to 831
> BS06290.pep
MKFLIILALAVAASAFPEPELRHRSREMPVVGDIGGRITGGSNAAVGQFP
YQVGLSLKLSALSSAWCGGSLIGSTWVLTAAHCTDGVQSVTVYLGATVRT
SAEITHTVSSSDIIIHSGWNSANLRNDISLIKIPATSSSSRISAVKLPSI
SNSYSTFVGDVAVASGWGRTSDTSSGVATNLQYVDLTVITNTKCAQTYGT
SVVTDSTLCVATTDAKSTCNGDSGGPLVLKSSSEQIGLTSFGASAGCEKG
YPAAFTRVTSYLDWIKTNTGI*
BS06290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..271 | 1375 | 100 | Plus |
Jon65Aiii-PA | 274 | CG6483-PA | 1..272 | 1..271 | 783 | 56.2 | Plus |
CG10477-PB | 272 | CG10477-PB | 6..270 | 4..271 | 767 | 56 | Plus |
CG10477-PA | 272 | CG10477-PA | 6..270 | 4..271 | 767 | 56 | Plus |
yip7-PA | 270 | CG6457-PA | 1..270 | 1..271 | 736 | 55.3 | Plus |