Clone BS06290 Report

Search the DGRC for BS06290

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptJon65Aiv-RA
Protein status:BS06290.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06290.3prime Sequence

839 bp (838 high quality bases) assembled on 2005-12-03

> BS06290.3prime
ATGGTCTAGAAAGCTTCTAGATGCCAGTGTTAGTCTTGATCCAGTCCAGG
TAGCTGGTCACACGAGTGAAGGCAGCGGGGTAGCCCTTCTCGCAACCGGC
AGAGGCACCGAATGAGGTCAGACCGATCTGCTCGCTGGACGACTTGAGGA
CCAGAGGACCGCCGGAGTCACCGTTGCAGGTGGACTTGGCGTCGGTGGTG
GCCACGCAGAGGGTTGAGTCGGTCACGACCGAGGTGCCGTAGGTTTGGGC
GCACTTGGTGTTGGTGATCACAGTCAGGTCGACATACTGAAGATTGGTAG
CCACACCACTGGAGGTGTCACTGGTGCGTCCCCATCCGGAGGCGACAGCG
ACGTCACCGACGAAGGTCGAGTAGGAGTTGGAGATGCTTGGCAGCTTGAC
GGCGGAGATCCTGCTGCTGGAGGAGGTGGCGGGGATCTTGATCAGGGAGA
TGTCGTTGCGCAGGTTAGCGCTGTTCCAGCCGGAGTGGATGATGATGTCG
GAGCTGGACACGGTGTGGGTGATCTCGGCGGAGGTGCGCACGGTGGCGCC
CAAGTAGACGGTCACGGACTGAACTCCATCGGTACAGTGAGCAGCGGTCA
GGACCCAGGTGCTGCCGATCAGAGAACCACCGCACCAGGCGCTGGACAGA
GCACTCAGCTTCAGGGAAAGTCCCACCTGGTAGGGGAACTGGCCGACGGC
GGCGTTGCTTCCTCCGGTGATGCGACCTCCAATGTCGCCAACGACGGGCA
TCTCGCGGCTGCGATGGCGCAGCTCCGGCTCGGGGAAAGCGGAGGCGGCC
ACAGCCAGGGCAAGGATGATCAGGAACTTCATGTCGACT

BS06290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6467-PA 816 Jon65Aiv-RA 1..816 832..17 4080 100 Minus
CG6483-PA 825 Jon65Aiii-RA 765..809 71..27 150 93.3 Minus
CG6298-PA 1239 Jon74E-RA 1075..1109 181..147 150 97.1 Minus
CG6457-PA 813 yip7-RA 144..171 695..668 140 100 Minus
CG10472-PA 873 CG10472-RA 688..725 184..147 140 94.7 Minus
CG10477-PA 819 CG10477-RA 374..400 462..436 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 904 CG6467-RA 42..857 832..17 4080 100 Minus
Jon74E-RA 1452 CG6298-RA 1155..1322 185..18 345 81.1 Minus
Jon99Ciii-RB 1240 CG31362-RB 210..407 637..440 240 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6039529..6040088 576..17 2800 100 Minus
3L 28110227 3L 6039196..6039452 832..576 1285 100 Minus
3L 28110227 3L 17546869..17547036 18..185 345 80.4 Plus
3L 28110227 3L 6051486..6051652 185..19 220 75.4 Minus
3R 32079331 3R 29922425..29922622 637..440 210 73.7 Minus
Blast to na_te.dros performed on 2015-02-10 22:04:19 has no hits.

BS06290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:33 Download gff for BS06290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:06 Download gff for BS06290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:04 Download gff for BS06290.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..866 9..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:12 Download gff for BS06290.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..866 9..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:12 Download gff for BS06290.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6039196..6039452 576..832 100 -> Minus
3L 6039530..6040097 9..575 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:04 Download gff for BS06290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6032296..6032552 576..832 100 -> Minus
arm_3L 6032630..6033197 9..575 99   Minus

BS06290.5prime Sequence

846 bp (759 high quality bases) assembled on 2005-12-03

> BS06290.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGGATCAGACTAACACTGGCATCTAGAAGCTTTCTAGACC

BS06290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6467-PA 816 Jon65Aiv-RA 1..792 17..808 3960 100 Plus
CG6298-PA 1239 Jon74E-RA 1075..1109 668..702 150 97.1 Plus
CG6457-PA 813 yip7-RA 144..171 154..181 140 100 Plus
CG10472-PA 873 CG10472-RA 688..725 665..702 140 94.7 Plus
CG10477-PA 819 CG10477-RA 374..400 387..413 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 904 CG6467-RA 42..857 17..832 4035 99.8 Plus
Jon99Ciii-RB 1240 CG31362-RB 210..407 212..409 240 76 Plus
Jon99Ciii-RA 837 CG31362-RA 210..407 212..409 240 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6039529..6040088 273..832 2740 99.3 Plus
3L 28110227 3L 6039196..6039452 17..273 1285 100 Plus
3L 28110227 3L 17546892..17547036 808..664 305 80.7 Minus
3R 32079331 3R 29922425..29922622 212..409 210 73.7 Plus
Blast to na_te.dros performed on 2015-02-12 04:47:08 has no hits.

BS06290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:34 Download gff for BS06290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:08 Download gff for BS06290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:27 Download gff for BS06290.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..866 17..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:29 Download gff for BS06290.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..866 17..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:29 Download gff for BS06290.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6039196..6039452 17..273 100 -> Plus
3L 6039530..6040097 274..840 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:27 Download gff for BS06290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6032296..6032552 17..273 100 -> Plus
arm_3L 6032630..6033197 274..840 98   Plus

BS06290.complete Sequence

848 bp (848 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635433

> BS06290.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGATCAAGACTAACACTGGCATCTAGAAGCTTTCTAGACCAT

BS06290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 816 CG6467-PA 1..816 17..832 4080 100 Plus
Jon74E-RA 1239 CG6298-PA 1071..1238 664..831 345 80.4 Plus
Jon65Aiii-RA 825 CG6483-PA 651..817 664..830 220 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 904 CG6467-RA 42..857 17..832 4080 100 Plus
Jon74E-RA 1452 CG6298-RA 1155..1322 664..831 345 80.4 Plus
Jon65Aiii-RA 875 CG6483-RA 671..837 664..830 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6039529..6040088 273..832 2800 100 Plus
3L 28110227 3L 6039196..6039452 17..273 1285 100 Plus
3L 28110227 3L 17546869..17547036 831..664 345 80.4 Minus
3L 28110227 3L 6051486..6051652 664..830 220 75.4 Plus
3R 32079331 3R 29922425..29922622 212..409 210 73.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:42 has no hits.

BS06290.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:41 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:12 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 40..864 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:11 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..857 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:41 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 40..864 17..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:23 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..857 17..832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:23 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6039196..6039452 17..273 100 -> Plus
3L 6039530..6040088 274..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:11 Download gff for BS06290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6032296..6032552 17..273 100 -> Plus
arm_3L 6032630..6033188 274..832 100   Plus

BS06290.pep Sequence

Translation from 16 to 831

> BS06290.pep
MKFLIILALAVAASAFPEPELRHRSREMPVVGDIGGRITGGSNAAVGQFP
YQVGLSLKLSALSSAWCGGSLIGSTWVLTAAHCTDGVQSVTVYLGATVRT
SAEITHTVSSSDIIIHSGWNSANLRNDISLIKIPATSSSSRISAVKLPSI
SNSYSTFVGDVAVASGWGRTSDTSSGVATNLQYVDLTVITNTKCAQTYGT
SVVTDSTLCVATTDAKSTCNGDSGGPLVLKSSSEQIGLTSFGASAGCEKG
YPAAFTRVTSYLDWIKTNTGI*

BS06290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-PA 271 CG6467-PA 1..271 1..271 1375 100 Plus
Jon65Aiii-PA 274 CG6483-PA 1..272 1..271 783 56.2 Plus
CG10477-PB 272 CG10477-PB 6..270 4..271 767 56 Plus
CG10477-PA 272 CG10477-PA 6..270 4..271 767 56 Plus
yip7-PA 270 CG6457-PA 1..270 1..271 736 55.3 Plus