Clone Sequence Records
BS06291.3prime Sequence
852 bp (755 high quality bases) assembled on 2005-12-03
> BS06291.3prime
ATGGTCTAGAAAGCTTTCAGTTTTTGTAGCCCTCCAGTGGGGAGCCTTCG
TCTAGATCTCTGAGAATGCCCTTGAAATATTTAACGGTCTTAACTCTCAG
CTCCAAAGTGGCATCCTCGTCGCAGATCATCAGGGTATTTGCATGCTGCT
GGAAGGCACTGACGGTCCACATGTGATTCACACCCTCCTCGATGGCCTTG
TACAGGGCAAATGCCTTGTGAGCTCCGGTGATGAGGATCATCACCTCCTT
GGAGTCCATCACAGTGCCAACGCCCACGGTTAAAGCCTGTTTGGGCACCT
TGCTCATATCGTTGTCAAAGAAACGGGCATTCGCTTCAAGTGTATCCTGC
GCCAGAGTTTTCACCCGCGTTCGGGACACCAATGAGGAGCCGGGCTCATT
GAAGGCAATATGGCCATCGGGTCCGATGCCACCGATGAACAGCTCCACTC
CTCCAGCCTCGCGGATCTGATCCTCGAACTTATTGCACTCGGCCACCAGA
TCAGCTGCATTGCCATCCAAAATGTGCACATTCTTGGGCTCAATGTCGAT
GTGCTTGAAGAAGTTGTTCCACATGAAGTAGTGATAGCTCTCATGGTGAT
CTCTGGCCAGTCCCACATACTCATCCATATTGAAGGTTTTCACATACTGA
AAGGATACCTTGCCCTGCTTATGAAACTCGATCAGTTCTTTGTACATTCC
CAATGGCGTAGATCCCGTGGGCAGGCCCAAAACGAAGTATCTGTCGGCAC
TCGGCTGAAAGTCATTGATGCGTTTCATCACATATTTGGCCGCCCACTTG
CCCACCGAGTCGCTGGTTTCCAAGATGACCAATCTCATGTCGACTGATAA
CT
BS06291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6957-PA | 822 | Oscillin-RA | 1..822 | 838..17 | 4110 | 100 | Minus |
CG6957-PB | 822 | Oscillin-RB | 1..822 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 1299 | CG6957-RH | 218..1039 | 838..17 | 4110 | 100 | Minus |
Oscillin-RF | 1388 | CG6957-RF | 218..1039 | 838..17 | 4110 | 100 | Minus |
Oscillin-RC | 1206 | CG6957-RC | 208..1029 | 838..17 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5548167..5548710 | 613..70 | 2720 | 100 | Minus |
2L | 23513712 | 2L | 5547971..5548101 | 742..612 | 655 | 100 | Minus |
2L | 23513712 | 2L | 5547815..5547912 | 838..741 | 490 | 100 | Minus |
2L | 23513712 | 2L | 5549015..5549070 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:02:14 has no hits.
BS06291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:35 Download gff for
BS06291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PA | 1..822 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:09 Download gff for
BS06291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PB | 1..822 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:44 Download gff for
BS06291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1040 | 8..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:40 Download gff for
BS06291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1040 | 8..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:40 Download gff for
BS06291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5547804..5547912 | 741..847 | 96 | -> | Minus |
2L | 5547973..5548100 | 613..740 | 100 | -> | Minus |
2L | 5548168..5548709 | 71..612 | 100 | -> | Minus |
2L | 5549017..5549070 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:44 Download gff for
BS06291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5547804..5547912 | 741..847 | 96 | -> | Minus |
arm_2L | 5547973..5548100 | 613..740 | 100 | -> | Minus |
arm_2L | 5548168..5548709 | 71..612 | 100 | -> | Minus |
arm_2L | 5549017..5549070 | 17..70 | 100 | | Minus |
BS06291.5prime Sequence
852 bp (793 high quality bases) assembled on 2005-12-03
> BS06291.5prime
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAGGCTCCCCACTGGAGGGCTACAAAAACTGAAAGCTATCTAGA
CC
BS06291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6957-PA | 822 | Oscillin-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
CG6957-PB | 822 | Oscillin-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 1299 | CG6957-RH | 218..1039 | 17..838 | 4110 | 100 | Plus |
Oscillin-RF | 1388 | CG6957-RF | 218..1039 | 17..838 | 4110 | 100 | Plus |
Oscillin-RC | 1206 | CG6957-RC | 208..1029 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5548167..5548710 | 242..785 | 2720 | 100 | Plus |
2L | 23513712 | 2L | 5547971..5548101 | 113..243 | 655 | 100 | Plus |
2L | 23513712 | 2L | 5547815..5547912 | 17..114 | 490 | 100 | Plus |
2L | 23513712 | 2L | 5549015..5549070 | 783..838 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:48:31 has no hits.
BS06291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:36 Download gff for
BS06291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:11 Download gff for
BS06291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:52 Download gff for
BS06291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1040 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:47 Download gff for
BS06291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1040 | 17..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:47 Download gff for
BS06291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5547804..5547912 | 8..114 | 96 | -> | Plus |
2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
2L | 5549017..5549070 | 785..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:52 Download gff for
BS06291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5547804..5547912 | 8..114 | 96 | -> | Plus |
arm_2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
arm_2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
arm_2L | 5549017..5549070 | 785..838 | 100 | | Plus |
BS06291.complete Sequence
854 bp (854 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635434
> BS06291.complete
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAGGCTCCCCACTGGAGGGCTACAAAAACTGAAAGCTTTCTAGA
CCAT
BS06291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 822 | CG6957-PH | 1..822 | 17..838 | 4110 | 100 | Plus |
Oscillin-RF | 822 | CG6957-PF | 1..822 | 17..838 | 4110 | 100 | Plus |
Oscillin-RC | 822 | CG6957-PC | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 1299 | CG6957-RH | 218..1039 | 17..838 | 4110 | 100 | Plus |
Oscillin-RF | 1388 | CG6957-RF | 218..1039 | 17..838 | 4110 | 100 | Plus |
Oscillin-RC | 1206 | CG6957-RC | 208..1029 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5548167..5548710 | 242..785 | 2720 | 100 | Plus |
2L | 23513712 | 2L | 5547971..5548101 | 113..243 | 655 | 100 | Plus |
2L | 23513712 | 2L | 5547815..5547912 | 17..114 | 490 | 100 | Plus |
2L | 23513712 | 2L | 5549015..5549070 | 783..838 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:16:54 has no hits.
BS06291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:42 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:14 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RB | 545..1388 | 8..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:04 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1028 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:42 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RB | 545..1388 | 8..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:28 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1028 | 17..837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:28 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5547815..5547912 | 17..114 | 100 | -> | Plus |
2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
2L | 5549017..5549069 | 785..837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:04 Download gff for
BS06291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5547815..5547912 | 17..114 | 100 | -> | Plus |
arm_2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
arm_2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
arm_2L | 5549017..5549069 | 785..837 | 100 | | Plus |
BS06291.pep Sequence
Translation from 16 to 837
> BS06291.pep
MRLVILETSDSVGKWAAKYVMKRINDFQPSADRYFVLGLPTGSTPLGMYK
ELIEFHKQGKVSFQYVKTFNMDEYVGLARDHHESYHYFMWNNFFKHIDIE
PKNVHILDGNAADLVAECNKFEDQIREAGGVELFIGGIGPDGHIAFNEPG
SSLVSRTRVKTLAQDTLEANARFFDNDMSKVPKQALTVGVGTVMDSKEVM
ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHANTLMICDEDATLELRVK
TVKYFKGILRDLDEGSPLEGYKN*
BS06291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-PH | 273 | CG6957-PH | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PF | 273 | CG6957-PF | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PC | 273 | CG6957-PC | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PB | 273 | CG6957-PB | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PA | 273 | CG6957-PA | 1..273 | 1..273 | 1434 | 100 | Plus |