Clone BS06291 Report

Search the DGRC for BS06291

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptOscillin-RA
Protein status:BS06291.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06291.3prime Sequence

852 bp (755 high quality bases) assembled on 2005-12-03

> BS06291.3prime
ATGGTCTAGAAAGCTTTCAGTTTTTGTAGCCCTCCAGTGGGGAGCCTTCG
TCTAGATCTCTGAGAATGCCCTTGAAATATTTAACGGTCTTAACTCTCAG
CTCCAAAGTGGCATCCTCGTCGCAGATCATCAGGGTATTTGCATGCTGCT
GGAAGGCACTGACGGTCCACATGTGATTCACACCCTCCTCGATGGCCTTG
TACAGGGCAAATGCCTTGTGAGCTCCGGTGATGAGGATCATCACCTCCTT
GGAGTCCATCACAGTGCCAACGCCCACGGTTAAAGCCTGTTTGGGCACCT
TGCTCATATCGTTGTCAAAGAAACGGGCATTCGCTTCAAGTGTATCCTGC
GCCAGAGTTTTCACCCGCGTTCGGGACACCAATGAGGAGCCGGGCTCATT
GAAGGCAATATGGCCATCGGGTCCGATGCCACCGATGAACAGCTCCACTC
CTCCAGCCTCGCGGATCTGATCCTCGAACTTATTGCACTCGGCCACCAGA
TCAGCTGCATTGCCATCCAAAATGTGCACATTCTTGGGCTCAATGTCGAT
GTGCTTGAAGAAGTTGTTCCACATGAAGTAGTGATAGCTCTCATGGTGAT
CTCTGGCCAGTCCCACATACTCATCCATATTGAAGGTTTTCACATACTGA
AAGGATACCTTGCCCTGCTTATGAAACTCGATCAGTTCTTTGTACATTCC
CAATGGCGTAGATCCCGTGGGCAGGCCCAAAACGAAGTATCTGTCGGCAC
TCGGCTGAAAGTCATTGATGCGTTTCATCACATATTTGGCCGCCCACTTG
CCCACCGAGTCGCTGGTTTCCAAGATGACCAATCTCATGTCGACTGATAA
CT

BS06291.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6957-PA 822 Oscillin-RA 1..822 838..17 4110 100 Minus
CG6957-PB 822 Oscillin-RB 1..822 838..17 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1039 838..17 4110 100 Minus
Oscillin-RF 1388 CG6957-RF 218..1039 838..17 4110 100 Minus
Oscillin-RC 1206 CG6957-RC 208..1029 838..17 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 613..70 2720 100 Minus
2L 23513712 2L 5547971..5548101 742..612 655 100 Minus
2L 23513712 2L 5547815..5547912 838..741 490 100 Minus
2L 23513712 2L 5549015..5549070 72..17 280 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:02:14 has no hits.

BS06291.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:35 Download gff for BS06291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PA 1..822 17..838 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:09 Download gff for BS06291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PB 1..822 17..838 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:44 Download gff for BS06291.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1040 8..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:40 Download gff for BS06291.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1040 8..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:40 Download gff for BS06291.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5547804..5547912 741..847 96 -> Minus
2L 5547973..5548100 613..740 100 -> Minus
2L 5548168..5548709 71..612 100 -> Minus
2L 5549017..5549070 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:44 Download gff for BS06291.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547804..5547912 741..847 96 -> Minus
arm_2L 5547973..5548100 613..740 100 -> Minus
arm_2L 5548168..5548709 71..612 100 -> Minus
arm_2L 5549017..5549070 17..70 100   Minus

BS06291.5prime Sequence

852 bp (793 high quality bases) assembled on 2005-12-03

> BS06291.5prime
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAGGCTCCCCACTGGAGGGCTACAAAAACTGAAAGCTATCTAGA
CC

BS06291.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6957-PA 822 Oscillin-RA 1..822 17..838 4110 100 Plus
CG6957-PB 822 Oscillin-RB 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1039 17..838 4110 100 Plus
Oscillin-RF 1388 CG6957-RF 218..1039 17..838 4110 100 Plus
Oscillin-RC 1206 CG6957-RC 208..1029 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 242..785 2720 100 Plus
2L 23513712 2L 5547971..5548101 113..243 655 100 Plus
2L 23513712 2L 5547815..5547912 17..114 490 100 Plus
2L 23513712 2L 5549015..5549070 783..838 280 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:48:31 has no hits.

BS06291.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:36 Download gff for BS06291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:11 Download gff for BS06291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PB 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:52 Download gff for BS06291.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1040 17..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:47 Download gff for BS06291.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1040 17..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:47 Download gff for BS06291.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5547804..5547912 8..114 96 -> Plus
2L 5547973..5548100 115..242 100 -> Plus
2L 5548168..5548709 243..784 100 -> Plus
2L 5549017..5549070 785..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:52 Download gff for BS06291.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547804..5547912 8..114 96 -> Plus
arm_2L 5547973..5548100 115..242 100 -> Plus
arm_2L 5548168..5548709 243..784 100 -> Plus
arm_2L 5549017..5549070 785..838 100   Plus

BS06291.complete Sequence

854 bp (854 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635434

> BS06291.complete
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAGGCTCCCCACTGGAGGGCTACAAAAACTGAAAGCTTTCTAGA
CCAT

BS06291.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 822 CG6957-PH 1..822 17..838 4110 100 Plus
Oscillin-RF 822 CG6957-PF 1..822 17..838 4110 100 Plus
Oscillin-RC 822 CG6957-PC 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1039 17..838 4110 100 Plus
Oscillin-RF 1388 CG6957-RF 218..1039 17..838 4110 100 Plus
Oscillin-RC 1206 CG6957-RC 208..1029 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 242..785 2720 100 Plus
2L 23513712 2L 5547971..5548101 113..243 655 100 Plus
2L 23513712 2L 5547815..5547912 17..114 490 100 Plus
2L 23513712 2L 5549015..5549070 783..838 280 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:16:54 has no hits.

BS06291.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:42 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RB 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:14 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RB 545..1388 8..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:04 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1028 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:42 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RB 545..1388 8..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:28 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1028 17..837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:28 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5547815..5547912 17..114 100 -> Plus
2L 5547973..5548100 115..242 100 -> Plus
2L 5548168..5548709 243..784 100 -> Plus
2L 5549017..5549069 785..837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:04 Download gff for BS06291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547815..5547912 17..114 100 -> Plus
arm_2L 5547973..5548100 115..242 100 -> Plus
arm_2L 5548168..5548709 243..784 100 -> Plus
arm_2L 5549017..5549069 785..837 100   Plus

BS06291.pep Sequence

Translation from 16 to 837

> BS06291.pep
MRLVILETSDSVGKWAAKYVMKRINDFQPSADRYFVLGLPTGSTPLGMYK
ELIEFHKQGKVSFQYVKTFNMDEYVGLARDHHESYHYFMWNNFFKHIDIE
PKNVHILDGNAADLVAECNKFEDQIREAGGVELFIGGIGPDGHIAFNEPG
SSLVSRTRVKTLAQDTLEANARFFDNDMSKVPKQALTVGVGTVMDSKEVM
ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHANTLMICDEDATLELRVK
TVKYFKGILRDLDEGSPLEGYKN*

BS06291.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-PH 273 CG6957-PH 1..273 1..273 1434 100 Plus
Oscillin-PF 273 CG6957-PF 1..273 1..273 1434 100 Plus
Oscillin-PC 273 CG6957-PC 1..273 1..273 1434 100 Plus
Oscillin-PB 273 CG6957-PB 1..273 1..273 1434 100 Plus
Oscillin-PA 273 CG6957-PA 1..273 1..273 1434 100 Plus