Clone Sequence Records
BS06293.3prime Sequence
405 bp (404 high quality bases) assembled on 2005-12-03
> BS06293.3prime
ATGGTCTAGAAAGCTTTTAGCTTTTTACCGATTTTCTGGATGGCCAACAG
CAGCAACAACGAATCGTGCAGCAAACGAGGCAGCCACAGAGAGATGAAAA
GATAAGCAAAGATTGCGAAAATTGTATTTTCCATTGTGGCAGCGTGGTGG
GAAGGGGAAGGTGTCCGTGTCTTGGCCAAAGGATGCAGGCGGAAACAAAA
GGGAAATGCCGAAACCGTTTGCTCCATGAGTCCTCAATGGGCATCGGGGT
GCGGTGGCAACCCTTTTCGGAGAACCCTTTTCGAAAACTGGCAAGACGAA
GGGTGCACAGCCGCTCACATTCCACCCACACCCACTCTGCCAGTGGATGT
GCGGTAAGGCAGTTACAAGGTCTGAGTTTGAGTTGATCCATGTCGACTGA
TAACT
BS06293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PA | 375 | CG33062-RA | 1..375 | 391..17 | 1850 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 933 | CG33062-RB | 245..619 | 391..17 | 1860 | 99.7 | Minus |
CG33062-RA | 954 | CG33062-RA | 266..640 | 391..17 | 1860 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19442103..19442394 | 17..308 | 1460 | 100 | Plus |
3L | 28110227 | 3L | 19446035..19446118 | 308..391 | 405 | 98.8 | Plus |
Blast to na_te.dros performed 2015-02-10 18:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 45..133 | 117 | 63.4 | Plus |
BS06293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:39 Download gff for
BS06293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 17..391 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:14 Download gff for
BS06293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 17..391 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:37:02 Download gff for
BS06293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..640 | 17..398 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:45 Download gff for
BS06293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..640 | 17..398 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:45 Download gff for
BS06293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19442103..19442393 | 17..307 | 100 | <- | Plus |
3L | 19446035..19446124 | 308..398 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:37:02 Download gff for
BS06293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19435203..19435493 | 17..307 | 100 | <- | Plus |
arm_3L | 19439135..19439224 | 308..398 | 95 | | Plus |
BS06293.5prime Sequence
405 bp (404 high quality bases) assembled on 2005-12-03
> BS06293.5prime
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCTAAAAGCTTTCT
AGACC
BS06293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PA | 375 | CG33062-RA | 1..375 | 17..391 | 1850 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 933 | CG33062-RB | 245..619 | 17..391 | 1860 | 99.7 | Plus |
CG33062-RA | 954 | CG33062-RA | 266..640 | 17..391 | 1860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19442103..19442394 | 391..100 | 1460 | 100 | Minus |
3L | 28110227 | 3L | 19446035..19446118 | 100..17 | 405 | 98.8 | Minus |
Blast to na_te.dros performed 2015-02-11 09:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 363..275 | 117 | 63.4 | Minus |
BS06293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:41 Download gff for
BS06293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:16 Download gff for
BS06293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:14:47 Download gff for
BS06293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..640 | 10..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:11 Download gff for
BS06293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..640 | 10..391 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:11 Download gff for
BS06293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19442103..19442393 | 101..391 | 100 | <- | Minus |
3L | 19446035..19446124 | 10..100 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:14:47 Download gff for
BS06293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19435203..19435493 | 101..391 | 100 | <- | Minus |
arm_3L | 19439135..19439224 | 10..100 | 95 | | Minus |
BS06293.complete Sequence
407 bp (407 high quality bases) assembled on 2005-12-09
GenBank Submission: KX795557
> BS06293.complete
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCTAAAAGCTTTCT
AGACCAT
BS06293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 375 | CG33062-PB | 1..375 | 17..391 | 1860 | 99.7 | Plus |
CG33062-RA | 375 | CG33062-PA | 1..375 | 17..391 | 1860 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 933 | CG33062-RB | 245..619 | 17..391 | 1860 | 99.7 | Plus |
CG33062-RA | 954 | CG33062-RA | 266..640 | 17..391 | 1860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19442103..19442394 | 391..100 | 1460 | 100 | Minus |
3L | 28110227 | 3L | 19446035..19446118 | 100..17 | 405 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-26 16:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 363..275 | 117 | 63.4 | Minus |
BS06293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:16:43 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:53 Download gff for
BS06293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 266..638 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:43 Download gff for
BS06293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptx1-RB | 1330..1351 | 345..367 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:00 Download gff for
BS06293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 266..638 | 17..389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:00 Download gff for
BS06293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19442105..19442393 | 101..389 | 100 | <- | Minus |
3L | 19446035..19446118 | 17..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:53 Download gff for
BS06293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19435205..19435493 | 101..389 | 100 | <- | Minus |
arm_3L | 19439135..19439218 | 17..100 | 98 | | Minus |
BS06293.pep Sequence
Translation from 16 to 390
> BS06293.pep
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKS*
BS06293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PB | 124 | CG33062-PB | 1..124 | 1..124 | 720 | 100 | Plus |
CG33062-PA | 124 | CG33062-PA | 1..124 | 1..124 | 720 | 100 | Plus |