Clone BS06293 Report

Search the DGRC for BS06293

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG33062-RA
Protein status:BS06293.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06293.3prime Sequence

405 bp (404 high quality bases) assembled on 2005-12-03

> BS06293.3prime
ATGGTCTAGAAAGCTTTTAGCTTTTTACCGATTTTCTGGATGGCCAACAG
CAGCAACAACGAATCGTGCAGCAAACGAGGCAGCCACAGAGAGATGAAAA
GATAAGCAAAGATTGCGAAAATTGTATTTTCCATTGTGGCAGCGTGGTGG
GAAGGGGAAGGTGTCCGTGTCTTGGCCAAAGGATGCAGGCGGAAACAAAA
GGGAAATGCCGAAACCGTTTGCTCCATGAGTCCTCAATGGGCATCGGGGT
GCGGTGGCAACCCTTTTCGGAGAACCCTTTTCGAAAACTGGCAAGACGAA
GGGTGCACAGCCGCTCACATTCCACCCACACCCACTCTGCCAGTGGATGT
GCGGTAAGGCAGTTACAAGGTCTGAGTTTGAGTTGATCCATGTCGACTGA
TAACT

BS06293.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PA 375 CG33062-RA 1..375 391..17 1850 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..619 391..17 1860 99.7 Minus
CG33062-RA 954 CG33062-RA 266..640 391..17 1860 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442103..19442394 17..308 1460 100 Plus
3L 28110227 3L 19446035..19446118 308..391 405 98.8 Plus
Blast to na_te.dros performed 2015-02-10 18:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 45..133 117 63.4 Plus

BS06293.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:39 Download gff for BS06293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 17..391 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:14 Download gff for BS06293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 17..391 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:37:02 Download gff for BS06293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..640 17..398 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:45 Download gff for BS06293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..640 17..398 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:45 Download gff for BS06293.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19442103..19442393 17..307 100 <- Plus
3L 19446035..19446124 308..398 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:37:02 Download gff for BS06293.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19435203..19435493 17..307 100 <- Plus
arm_3L 19439135..19439224 308..398 95   Plus

BS06293.5prime Sequence

405 bp (404 high quality bases) assembled on 2005-12-03

> BS06293.5prime
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCTAAAAGCTTTCT
AGACC

BS06293.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PA 375 CG33062-RA 1..375 17..391 1850 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..619 17..391 1860 99.7 Plus
CG33062-RA 954 CG33062-RA 266..640 17..391 1860 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442103..19442394 391..100 1460 100 Minus
3L 28110227 3L 19446035..19446118 100..17 405 98.8 Minus
Blast to na_te.dros performed 2015-02-11 09:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 363..275 117 63.4 Minus

BS06293.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:41 Download gff for BS06293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 17..391 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:16 Download gff for BS06293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:14:47 Download gff for BS06293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..640 10..391 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:11 Download gff for BS06293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..640 10..391 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:11 Download gff for BS06293.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19442103..19442393 101..391 100 <- Minus
3L 19446035..19446124 10..100 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:14:47 Download gff for BS06293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19435203..19435493 101..391 100 <- Minus
arm_3L 19439135..19439224 10..100 95   Minus

BS06293.complete Sequence

407 bp (407 high quality bases) assembled on 2005-12-09

GenBank Submission: KX795557

> BS06293.complete
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCTAAAAGCTTTCT
AGACCAT

BS06293.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 375 CG33062-PB 1..375 17..391 1860 99.7 Plus
CG33062-RA 375 CG33062-PA 1..375 17..391 1860 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..619 17..391 1860 99.7 Plus
CG33062-RA 954 CG33062-RA 266..640 17..391 1860 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442103..19442394 391..100 1460 100 Minus
3L 28110227 3L 19446035..19446118 100..17 405 98.8 Minus
Blast to na_te.dros performed 2014-11-26 16:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 363..275 117 63.4 Minus

BS06293.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:16:43 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:53 Download gff for BS06293.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 266..638 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:43 Download gff for BS06293.complete
Subject Subject Range Query Range Percent Splice Strand
Ptx1-RB 1330..1351 345..367 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:00 Download gff for BS06293.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 266..638 17..389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:00 Download gff for BS06293.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19442105..19442393 101..389 100 <- Minus
3L 19446035..19446118 17..100 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:53 Download gff for BS06293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19435205..19435493 101..389 100 <- Minus
arm_3L 19439135..19439218 17..100 98   Minus

BS06293.pep Sequence

Translation from 16 to 390

> BS06293.pep
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKS*

BS06293.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PB 124 CG33062-PB 1..124 1..124 720 100 Plus
CG33062-PA 124 CG33062-PA 1..124 1..124 720 100 Plus