Clone Sequence Records
BS06301.3prime Sequence
955 bp (794 high quality bases) assembled on 2005-12-03
> BS06301.3prime
ATGGTCTAGAAAGCTTCTAATTGAAGTGAATGCCCGCTGAATTGAAAGCC
AGCAGGAGCCGCATAAAGTCGTCGATGTCCATGCTTCTCGCACGTTTTGC
GGCCATGTCCTGTTCCTCCAAGATACTTATGACCTTATCCTGCATTTTGA
AGTCGTCTTCAATCGGCTCATTCCTGAGTGAGCGGTATAGCTTGTAGTTT
TTCTCCAACATCTCCAAAACGGACGTCACCTTAAAGGTAGCCGCCAGCGT
TTTGTTCTTGCGCAGGAAGGCAATACGGGTGAGTCCGTCCCATTCGGTGA
AGTTGACCGGTGGCGGTGGGTTTTTTGGCTCCAGCCGGACCACACTGCTT
TCTACCTTTGGTGGCGGCCTAAAGTTGTTCTTGCCCACCTTCATGAGCAT
GTCCACCCGGGCCAGCAGTTGGGTGTTGATACTCAGACGACAGTAGAGCT
TATCACCCGGTTTGGCCACCAATCGTTCTGCGAACTCGCGTTGGAACATA
AGTACGGCGCAACGGAAGAGTGGTCGGTGGAGGAGCAACTTGAAGATCAG
TGGCGAACTGATCTGATACGGAACGTTGGCGATGCACAGATCGAAGAAGG
GCAGCTCCGCCTTTAGGAAGTCTCCAATCAGCACCTGGAGCTTCGGCTGC
AGCGGAGTTGCCTGCACACGCTTCTGCAACTCGGCGGCCAATCGTGTGTC
AATCTCACAGGCGATCACTTTCTTGGCGCGCTCCAGCATCCGAACGGTCA
TGTTTCCGGTTCCAGGACCGATTTCCAGCACCACATCGGTAGCTCTCAAA
GCGGCTTTCTCCAGCATGGTGGTTATCACCAGAGGATTCTTCAGGATGTG
CTGACCAAAGTCCTTGTTGAAAACGATCCCCTGTTTTTGCACATCATTAT
GAATCCGGCTCTTCTTTTCCTTCGTAACCTTGGGCATGTCGACTGGATAC
TTCCT
BS06301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-PA | 921 | CG11837-RA | 1..921 | 937..17 | 4605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 1103 | CG11837-RA | 108..1028 | 937..17 | 4605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29049719..29050432 | 880..167 | 3570 | 100 | Minus |
3R | 32079331 | 3R | 29050495..29050646 | 168..17 | 760 | 100 | Minus |
3R | 32079331 | 3R | 29049600..29049658 | 937..879 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:37:31 has no hits.
BS06301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:47 Download gff for
BS06301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 1..921 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:25 Download gff for
BS06301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 1..921 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:59 Download gff for
BS06301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 101..1028 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:56 Download gff for
BS06301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 101..1028 | 17..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:56 Download gff for
BS06301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29049593..29049657 | 880..944 | 95 | -> | Minus |
3R | 29049720..29050432 | 167..879 | 100 | -> | Minus |
3R | 29050497..29050646 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:59 Download gff for
BS06301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24875315..24875379 | 880..944 | 95 | -> | Minus |
arm_3R | 24875442..24876154 | 167..879 | 100 | -> | Minus |
arm_3R | 24876219..24876368 | 17..166 | 100 | | Minus |
BS06301.5prime Sequence
833 bp (831 high quality bases) assembled on 2005-12-03
> BS06301.5prime
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCANGATAAGGTCATAAGTATCT
BS06301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-PA | 921 | CG11837-RA | 1..817 | 17..833 | 4066 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 1103 | CG11837-RA | 108..924 | 17..833 | 4074 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29049719..29050432 | 74..787 | 3570 | 100 | Plus |
3R | 32079331 | 3R | 29049600..29049658 | 17..75 | 295 | 100 | Plus |
3R | 32079331 | 3R | 29050495..29050542 | 786..833 | 229 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:55:01 has no hits.
BS06301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:48 Download gff for
BS06301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:26 Download gff for
BS06301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:27 Download gff for
BS06301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 101..924 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:55 Download gff for
BS06301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 101..924 | 10..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:55 Download gff for
BS06301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29049593..29049657 | 10..74 | 95 | -> | Plus |
3R | 29049720..29050432 | 75..787 | 100 | -> | Plus |
3R | 29050497..29050542 | 788..833 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:27 Download gff for
BS06301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24875315..24875379 | 10..74 | 95 | -> | Plus |
arm_3R | 24875442..24876154 | 75..787 | 100 | -> | Plus |
arm_3R | 24876219..24876264 | 788..833 | 97 | | Plus |
BS06301.complete Sequence
953 bp (953 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635436
> BS06301.complete
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCAGGATAAGGTCATAAGTATCTTGGAGGAACAGGACATG
GCCGCAAAACGTGCGAGAAGCATGGACATCGACGACTTTATGCGGCTCCT
GCTGGCTTTCAATTCAGCGGGCATTCACTTCAATTAGAAGCTTTCTAGAC
CAT
BS06301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 921 | CG11837-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 1103 | CG11837-RA | 108..1028 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29049719..29050432 | 74..787 | 3570 | 100 | Plus |
3R | 32079331 | 3R | 29050495..29050646 | 786..937 | 760 | 100 | Plus |
3R | 32079331 | 3R | 29049600..29049658 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:46:01 has no hits.
BS06301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:25 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:53 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 83..1010 | 10..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:05 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 108..1028 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:25 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 83..1010 | 10..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:14 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 108..1028 | 17..937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:14 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29049600..29049657 | 17..74 | 100 | -> | Plus |
3R | 29049720..29050432 | 75..787 | 100 | -> | Plus |
3R | 29050497..29050646 | 788..937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:05 Download gff for
BS06301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24875322..24875379 | 17..74 | 100 | -> | Plus |
arm_3R | 24875442..24876154 | 75..787 | 100 | -> | Plus |
arm_3R | 24876219..24876368 | 788..937 | 100 | | Plus |
BS06301.pep Sequence
Translation from 16 to 936
> BS06301.pep
MPKVTKEKKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRAT
DVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKL
QVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQR
EFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV
RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL
YRSLRNEPIEDDFKMQDKVISILEEQDMAAKRARSMDIDDFMRLLLAFNS
AGIHFN*
BS06301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-PA | 306 | CG11837-PA | 1..306 | 1..306 | 1557 | 100 | Plus |
mtTFB1-PA | 330 | CG42631-PA | 34..257 | 25..229 | 181 | 29.5 | Plus |