Clone BS06301 Report

Search the DGRC for BS06301

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG11837-RA
Protein status:BS06301.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06301.3prime Sequence

955 bp (794 high quality bases) assembled on 2005-12-03

> BS06301.3prime
ATGGTCTAGAAAGCTTCTAATTGAAGTGAATGCCCGCTGAATTGAAAGCC
AGCAGGAGCCGCATAAAGTCGTCGATGTCCATGCTTCTCGCACGTTTTGC
GGCCATGTCCTGTTCCTCCAAGATACTTATGACCTTATCCTGCATTTTGA
AGTCGTCTTCAATCGGCTCATTCCTGAGTGAGCGGTATAGCTTGTAGTTT
TTCTCCAACATCTCCAAAACGGACGTCACCTTAAAGGTAGCCGCCAGCGT
TTTGTTCTTGCGCAGGAAGGCAATACGGGTGAGTCCGTCCCATTCGGTGA
AGTTGACCGGTGGCGGTGGGTTTTTTGGCTCCAGCCGGACCACACTGCTT
TCTACCTTTGGTGGCGGCCTAAAGTTGTTCTTGCCCACCTTCATGAGCAT
GTCCACCCGGGCCAGCAGTTGGGTGTTGATACTCAGACGACAGTAGAGCT
TATCACCCGGTTTGGCCACCAATCGTTCTGCGAACTCGCGTTGGAACATA
AGTACGGCGCAACGGAAGAGTGGTCGGTGGAGGAGCAACTTGAAGATCAG
TGGCGAACTGATCTGATACGGAACGTTGGCGATGCACAGATCGAAGAAGG
GCAGCTCCGCCTTTAGGAAGTCTCCAATCAGCACCTGGAGCTTCGGCTGC
AGCGGAGTTGCCTGCACACGCTTCTGCAACTCGGCGGCCAATCGTGTGTC
AATCTCACAGGCGATCACTTTCTTGGCGCGCTCCAGCATCCGAACGGTCA
TGTTTCCGGTTCCAGGACCGATTTCCAGCACCACATCGGTAGCTCTCAAA
GCGGCTTTCTCCAGCATGGTGGTTATCACCAGAGGATTCTTCAGGATGTG
CTGACCAAAGTCCTTGTTGAAAACGATCCCCTGTTTTTGCACATCATTAT
GAATCCGGCTCTTCTTTTCCTTCGTAACCTTGGGCATGTCGACTGGATAC
TTCCT

BS06301.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-PA 921 CG11837-RA 1..921 937..17 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 108..1028 937..17 4605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 880..167 3570 100 Minus
3R 32079331 3R 29050495..29050646 168..17 760 100 Minus
3R 32079331 3R 29049600..29049658 937..879 295 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:37:31 has no hits.

BS06301.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:47 Download gff for BS06301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 1..921 17..937 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:25 Download gff for BS06301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 1..921 17..937 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:59 Download gff for BS06301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 101..1028 17..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:56 Download gff for BS06301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 101..1028 17..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:56 Download gff for BS06301.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29049593..29049657 880..944 95 -> Minus
3R 29049720..29050432 167..879 100 -> Minus
3R 29050497..29050646 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:59 Download gff for BS06301.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875315..24875379 880..944 95 -> Minus
arm_3R 24875442..24876154 167..879 100 -> Minus
arm_3R 24876219..24876368 17..166 100   Minus

BS06301.5prime Sequence

833 bp (831 high quality bases) assembled on 2005-12-03

> BS06301.5prime
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCANGATAAGGTCATAAGTATCT

BS06301.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-PA 921 CG11837-RA 1..817 17..833 4066 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 108..924 17..833 4074 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 74..787 3570 100 Plus
3R 32079331 3R 29049600..29049658 17..75 295 100 Plus
3R 32079331 3R 29050495..29050542 786..833 229 97.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:55:01 has no hits.

BS06301.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:48 Download gff for BS06301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:26 Download gff for BS06301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:27 Download gff for BS06301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 101..924 10..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:55 Download gff for BS06301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 101..924 10..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:55 Download gff for BS06301.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29049593..29049657 10..74 95 -> Plus
3R 29049720..29050432 75..787 100 -> Plus
3R 29050497..29050542 788..833 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:27 Download gff for BS06301.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875315..24875379 10..74 95 -> Plus
arm_3R 24875442..24876154 75..787 100 -> Plus
arm_3R 24876219..24876264 788..833 97   Plus

BS06301.complete Sequence

953 bp (953 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635436

> BS06301.complete
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCAGGATAAGGTCATAAGTATCTTGGAGGAACAGGACATG
GCCGCAAAACGTGCGAGAAGCATGGACATCGACGACTTTATGCGGCTCCT
GCTGGCTTTCAATTCAGCGGGCATTCACTTCAATTAGAAGCTTTCTAGAC
CAT

BS06301.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 921 CG11837-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 108..1028 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 74..787 3570 100 Plus
3R 32079331 3R 29050495..29050646 786..937 760 100 Plus
3R 32079331 3R 29049600..29049658 17..75 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:46:01 has no hits.

BS06301.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:25 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:53 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 83..1010 10..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:05 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 108..1028 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:25 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 83..1010 10..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:14 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 108..1028 17..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:14 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29049600..29049657 17..74 100 -> Plus
3R 29049720..29050432 75..787 100 -> Plus
3R 29050497..29050646 788..937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:05 Download gff for BS06301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875322..24875379 17..74 100 -> Plus
arm_3R 24875442..24876154 75..787 100 -> Plus
arm_3R 24876219..24876368 788..937 100   Plus

BS06301.pep Sequence

Translation from 16 to 936

> BS06301.pep
MPKVTKEKKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRAT
DVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKL
QVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQR
EFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV
RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL
YRSLRNEPIEDDFKMQDKVISILEEQDMAAKRARSMDIDDFMRLLLAFNS
AGIHFN*

BS06301.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-PA 306 CG11837-PA 1..306 1..306 1557 100 Plus
mtTFB1-PA 330 CG42631-PA 34..257 25..229 181 29.5 Plus