Clone BS06302 Report

Search the DGRC for BS06302

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptborr-RA
Protein status:BS06302.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06302.3prime Sequence

912 bp (770 high quality bases) assembled on 2005-12-03

> BS06302.3prime
ATGGTCTAGAAAGCTTCTACTTGAACACCGCCTGGCTGGCCTTATTAACA
ATCATCTGCAAGTTCTCGTGCAGCGTTTTGATCTGGTTAAGGGTGTCCTC
GTCCAGGTTCTCCAACAGATTTGACTCCACCTCGTCGGCATCCAGTTTTT
TGGGCCGCAAGCTAAGAACTCCGTTCCGAATGGGTATGTTCACATTGGCG
AACTTGTCTGGCATTACTTGAGCCACCATGGGACTGCCGTATTTGGATAG
TGCCACCTCGCCGGGCTTGGGATAGCGCAGGAATGCCATCGGCGGTGTAG
TTGGCGATCCGGAGCGCATTTGCTTCTGTTTCAAAGGAGTGCGGTCGGCA
CTGAAGGCCTTCGCACGCGAGGCCATCGGTGTGCGCAGTTTGCTGCGCGA
ATTGCGGCTGCTGCTGCTGCTGCTCGAAATTGACGGCGGTTTGGCCGAGT
GCAATATGTTGAGATCCCCGCAGGCGGAACGACTGCGCCGCGCTCGACGA
GCCCTCGCCGAGTGCAGTGGTCCGGGTGTGCGCATGGCCTTCGTGGACCG
CAGCAGGGAGCCTGTGTGGGCGGCCAGGATGCTCCCACCGCTGGCACCGA
TGCTGCTGTCCTCTTCGTCATTGCGACTTCCAGTGGCGGAGGGGGCGTGG
CCCTCGATGGCGCTGCCACTCATGGACATCGAGGCGAGCAGCTGCGTCTG
ATCGCTGGCCTTGAAGTCGCTGAAGCGGTCCAGTTCCTCGAAGAGGCGCA
GCACTTCGGGCATCTTCAGATTGGCCAGCTCCTTCTGCACCTGGCCGAGC
AGTGTCTTCACCTGGTGGTCCACGGCGGAGAGGAACTTGGTCTCCAGCGA
ATCGATGCTGATAAGGCGGGAATCCATTTTCAGCTCGTACAGGCGCACCT
TCTCTTCGCGAT

BS06302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PA 948 Borr-RA 53..948 912..17 4480 100 Minus
CG4454-PB 960 Borr-RB 363..960 614..17 2990 100 Minus
CG4454-PB 960 Borr-RB 53..352 912..613 1500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 185..1080 912..17 4480 100 Minus
borr-RB 1298 CG4454-RB 185..1092 912..17 4350 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252340 216..614 1995 100 Plus
2L 23513712 2L 9252635..9252934 613..912 1500 100 Plus
2L 23513712 2L 9251678..9251876 17..215 995 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:21:22 has no hits.

BS06302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:49 Download gff for BS06302.3prime
Subject Subject Range Query Range Percent Splice Strand
Borr-PA 53..948 17..912 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:27 Download gff for BS06302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PA 53..948 17..912 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:59 Download gff for BS06302.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 185..1085 9..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:52:03 Download gff for BS06302.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 185..1085 9..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:52:03 Download gff for BS06302.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251668..9251876 9..215 98 <- Plus
2L 9251942..9252338 216..612 100 <- Plus
2L 9252635..9252934 613..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:59 Download gff for BS06302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251668..9251876 9..215 98 <- Plus
arm_2L 9251942..9252338 216..612 100 <- Plus
arm_2L 9252635..9252934 613..912 100   Plus

BS06302.5prime Sequence

898 bp (844 high quality bases) assembled on 2005-12-03

> BS06302.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAACTGGATGCCGACGAGG
TGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTTACCAGA

BS06302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PA 948 Borr-RA 1..818 17..834 4090 100 Plus
CG4454-PB 960 Borr-RB 363..830 367..834 2340 100 Plus
CG4454-PB 960 Borr-RB 1..352 17..368 1760 100 Plus
CG4454-PB 960 Borr-RB 827..895 830..898 320 98.5 Plus
CG4454-PA 948 Borr-RA 815..883 830..898 320 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 133..1015 17..898 4375 99.8 Plus
borr-RB 1298 CG4454-RB 133..1027 17..898 4245 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252340 765..367 1995 100 Minus
2L 23513712 2L 9252635..9252986 368..17 1760 100 Minus
2L 23513712 2L 9251743..9251876 898..766 605 98.5 Minus
Blast to na_te.dros performed on 2015-02-02 11:29:42 has no hits.

BS06302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:50 Download gff for BS06302.5prime
Subject Subject Range Query Range Percent Splice Strand
Borr-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:28 Download gff for BS06302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:32 Download gff for BS06302.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1014 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:16 Download gff for BS06302.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1014 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:16 Download gff for BS06302.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251942..9252338 369..765 100 <- Minus
2L 9251744..9251876 766..897 98 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:32 Download gff for BS06302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251744..9251876 766..897 98 <- Minus
arm_2L 9251942..9252338 369..765 100 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BS06302.complete Sequence

980 bp (980 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635437

> BS06302.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTGGATGCCGACGAG
GTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTAACCAGAT
CAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGGCCAGCCAGG
CGGTGTTCAAGTAGAAGCTTTCTAGACCAT

BS06302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 948 CG4454-PA 1..948 17..964 4740 100 Plus
borr-RB 960 CG4454-PB 1..960 17..964 4585 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 133..1080 17..964 4740 100 Plus
borr-RB 1298 CG4454-RB 133..1092 17..964 4585 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252340 765..367 1995 100 Minus
2L 23513712 2L 9252635..9252986 368..17 1760 100 Minus
2L 23513712 2L 9251678..9251876 964..766 995 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:51:00 has no hits.

BS06302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:26 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RA 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:55 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RA 131..1083 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:59 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1080 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:26 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RA 131..1083 17..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:05 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1080 17..964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:05 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9251678..9251876 766..964 100 <- Minus
2L 9251942..9252338 369..765 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:59 Download gff for BS06302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251678..9251876 766..964 100 <- Minus
arm_2L 9251942..9252338 369..765 100 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BS06302.pep Sequence

Translation from 16 to 963

> BS06302.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEEDSSIGASGGSILAAHTGSLLRSTKAMRTPGPL
HSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTPMASR
AKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPMVAQV
MPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIKTLHE
NLQMIVNKASQAVFK*

BS06302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
borr-PA 315 CG4454-PA 1..315 1..315 1564 100 Plus
borr-PB 319 CG4454-PB 1..319 1..315 1549 98.7 Plus
aust-PB 216 CG17009-PB 88..210 175..311 236 41.4 Plus
aust-PA 216 CG17009-PA 88..210 175..311 236 41.4 Plus
aust-PB 216 CG17009-PB 1..98 1..99 178 41 Plus
aust-PA 216 CG17009-PA 1..98 1..99 178 41 Plus