Clone Sequence Records
BS06302.3prime Sequence
912 bp (770 high quality bases) assembled on 2005-12-03
> BS06302.3prime
ATGGTCTAGAAAGCTTCTACTTGAACACCGCCTGGCTGGCCTTATTAACA
ATCATCTGCAAGTTCTCGTGCAGCGTTTTGATCTGGTTAAGGGTGTCCTC
GTCCAGGTTCTCCAACAGATTTGACTCCACCTCGTCGGCATCCAGTTTTT
TGGGCCGCAAGCTAAGAACTCCGTTCCGAATGGGTATGTTCACATTGGCG
AACTTGTCTGGCATTACTTGAGCCACCATGGGACTGCCGTATTTGGATAG
TGCCACCTCGCCGGGCTTGGGATAGCGCAGGAATGCCATCGGCGGTGTAG
TTGGCGATCCGGAGCGCATTTGCTTCTGTTTCAAAGGAGTGCGGTCGGCA
CTGAAGGCCTTCGCACGCGAGGCCATCGGTGTGCGCAGTTTGCTGCGCGA
ATTGCGGCTGCTGCTGCTGCTGCTCGAAATTGACGGCGGTTTGGCCGAGT
GCAATATGTTGAGATCCCCGCAGGCGGAACGACTGCGCCGCGCTCGACGA
GCCCTCGCCGAGTGCAGTGGTCCGGGTGTGCGCATGGCCTTCGTGGACCG
CAGCAGGGAGCCTGTGTGGGCGGCCAGGATGCTCCCACCGCTGGCACCGA
TGCTGCTGTCCTCTTCGTCATTGCGACTTCCAGTGGCGGAGGGGGCGTGG
CCCTCGATGGCGCTGCCACTCATGGACATCGAGGCGAGCAGCTGCGTCTG
ATCGCTGGCCTTGAAGTCGCTGAAGCGGTCCAGTTCCTCGAAGAGGCGCA
GCACTTCGGGCATCTTCAGATTGGCCAGCTCCTTCTGCACCTGGCCGAGC
AGTGTCTTCACCTGGTGGTCCACGGCGGAGAGGAACTTGGTCTCCAGCGA
ATCGATGCTGATAAGGCGGGAATCCATTTTCAGCTCGTACAGGCGCACCT
TCTCTTCGCGAT
BS06302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PA | 948 | Borr-RA | 53..948 | 912..17 | 4480 | 100 | Minus |
CG4454-PB | 960 | Borr-RB | 363..960 | 614..17 | 2990 | 100 | Minus |
CG4454-PB | 960 | Borr-RB | 53..352 | 912..613 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 1286 | CG4454-RA | 185..1080 | 912..17 | 4480 | 100 | Minus |
borr-RB | 1298 | CG4454-RB | 185..1092 | 912..17 | 4350 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252340 | 216..614 | 1995 | 100 | Plus |
2L | 23513712 | 2L | 9252635..9252934 | 613..912 | 1500 | 100 | Plus |
2L | 23513712 | 2L | 9251678..9251876 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:21:22 has no hits.
BS06302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:49 Download gff for
BS06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-PA | 53..948 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:27 Download gff for
BS06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PA | 53..948 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:59 Download gff for
BS06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 185..1085 | 9..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:52:03 Download gff for
BS06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 185..1085 | 9..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:52:03 Download gff for
BS06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251668..9251876 | 9..215 | 98 | <- | Plus |
2L | 9251942..9252338 | 216..612 | 100 | <- | Plus |
2L | 9252635..9252934 | 613..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:59 Download gff for
BS06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251668..9251876 | 9..215 | 98 | <- | Plus |
arm_2L | 9251942..9252338 | 216..612 | 100 | <- | Plus |
arm_2L | 9252635..9252934 | 613..912 | 100 | | Plus |
BS06302.5prime Sequence
898 bp (844 high quality bases) assembled on 2005-12-03
> BS06302.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAACTGGATGCCGACGAGG
TGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTTACCAGA
BS06302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PA | 948 | Borr-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG4454-PB | 960 | Borr-RB | 363..830 | 367..834 | 2340 | 100 | Plus |
CG4454-PB | 960 | Borr-RB | 1..352 | 17..368 | 1760 | 100 | Plus |
CG4454-PB | 960 | Borr-RB | 827..895 | 830..898 | 320 | 98.5 | Plus |
CG4454-PA | 948 | Borr-RA | 815..883 | 830..898 | 320 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 1286 | CG4454-RA | 133..1015 | 17..898 | 4375 | 99.8 | Plus |
borr-RB | 1298 | CG4454-RB | 133..1027 | 17..898 | 4245 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252340 | 765..367 | 1995 | 100 | Minus |
2L | 23513712 | 2L | 9252635..9252986 | 368..17 | 1760 | 100 | Minus |
2L | 23513712 | 2L | 9251743..9251876 | 898..766 | 605 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:29:42 has no hits.
BS06302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:50 Download gff for
BS06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:28 Download gff for
BS06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:32 Download gff for
BS06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1014 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:16 Download gff for
BS06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1014 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:16 Download gff for
BS06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
2L | 9251744..9251876 | 766..897 | 98 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:32 Download gff for
BS06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251744..9251876 | 766..897 | 98 | <- | Minus |
arm_2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BS06302.complete Sequence
980 bp (980 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635437
> BS06302.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTGGATGCCGACGAG
GTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTAACCAGAT
CAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGGCCAGCCAGG
CGGTGTTCAAGTAGAAGCTTTCTAGACCAT
BS06302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 948 | CG4454-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
borr-RB | 960 | CG4454-PB | 1..960 | 17..964 | 4585 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 1286 | CG4454-RA | 133..1080 | 17..964 | 4740 | 100 | Plus |
borr-RB | 1298 | CG4454-RB | 133..1092 | 17..964 | 4585 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252340 | 765..367 | 1995 | 100 | Minus |
2L | 23513712 | 2L | 9252635..9252986 | 368..17 | 1760 | 100 | Minus |
2L | 23513712 | 2L | 9251678..9251876 | 964..766 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:00 has no hits.
BS06302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:26 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:55 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 131..1083 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:59 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1080 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:26 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RA | 131..1083 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:05 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1080 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:05 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251678..9251876 | 766..964 | 100 | <- | Minus |
2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:59 Download gff for
BS06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251678..9251876 | 766..964 | 100 | <- | Minus |
arm_2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BS06302.pep Sequence
Translation from 16 to 963
> BS06302.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEEDSSIGASGGSILAAHTGSLLRSTKAMRTPGPL
HSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTPMASR
AKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPMVAQV
MPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIKTLHE
NLQMIVNKASQAVFK*
BS06302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-PA | 315 | CG4454-PA | 1..315 | 1..315 | 1564 | 100 | Plus |
borr-PB | 319 | CG4454-PB | 1..319 | 1..315 | 1549 | 98.7 | Plus |
aust-PB | 216 | CG17009-PB | 88..210 | 175..311 | 236 | 41.4 | Plus |
aust-PA | 216 | CG17009-PA | 88..210 | 175..311 | 236 | 41.4 | Plus |
aust-PB | 216 | CG17009-PB | 1..98 | 1..99 | 178 | 41 | Plus |
aust-PA | 216 | CG17009-PA | 1..98 | 1..99 | 178 | 41 | Plus |