Clone Sequence Records
BS06305.3prime Sequence
889 bp (888 high quality bases) assembled on 2005-12-03
> BS06305.3prime
ATGGTCTAGAAAGCTTTCATTTCGGTTGGAAGGGATCCTTTTCGATGTTT
CGATCCAGTCGCTTATCGCCATCGGACTCCACCTGAGATAGCTGGCCGAA
GCCCTCCTCGTCGACAAAGCAGATCTCATGACCATCGGGGTCACCGAGAA
TTACCACCGTAACGGTGGCCTTTCCTGGCGTATCCAGGGTAATCAGAGGT
GTTAGAATGGCCCCGCCAGCTGCTTTAACCGCTTCTTGGAGAGGTGGCTG
CTGGGCCGCCGGAATGGCAAAGGCGATTCGTCCATAGGCCTTAGCTCTAT
TAATTGGCTCTGAGATCTGGGTGATCTCCAGTGAAGCCTGCTGTTCACCG
TAACTCAAACGCACGCTTGCTTCGTTCTCCTCGAGAACTTTCAGTTGCAG
CAAATCGTGCCAGTATTTGCGCGAGTTTTGAAGATTGCTCACATTAAGCT
CCACCGATTGGACAGGATCAGAGCTGGCAGAGGCCTGATCGATCACATAG
AACTTGTAGCCATCGGGCGAGGTCAGCAGACTACCGGCTTTTCCAGACAC
CTGTGTCACAGGATACGAGTGCTCGGCGGCGCGGGAAAGGATATCCTTGG
AGTGTATGGTCACGCCCCCAAAATCATTGCCCATTTCGTAGCTGCTCACT
CCATAGTTATACGTGAGTTCGATGACGAAATGCGAACTTTCGGGTCCATA
ACCCACCATTGTTTTGCTCCACCGATTGTCATAGGGCCCGTTGCAAGCTG
CGTCGCATCCCTCCTTGAACTCCTCATGCCGCAGCACCGTCATTCCCAAG
ATTTGCCGAAAGAAGAAGGCGTTTTTCGCCCGATCTCCGATTTTGACACA
TAGTGCAGGGCGCGTCCCGATATGGCCGACATGTCGACT
BS06305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-PA | 867 | CG1532-RA | 38..867 | 846..17 | 4150 | 100 | Minus |
CG1532-PA | 867 | CG1532-RA | 1..37 | 882..846 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 1236 | CG1532-RB | 87..953 | 882..17 | 4310 | 99.9 | Minus |
CG1532-RA | 1073 | CG1532-RA | 87..953 | 882..17 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21026408..21027022 | 17..631 | 3075 | 100 | Plus |
X | 23542271 | X | 21027737..21027845 | 630..738 | 545 | 100 | Plus |
X | 23542271 | X | 21028178..21028275 | 786..882 | 440 | 99 | Plus |
X | 23542271 | X | 21027902..21027953 | 737..788 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:11:54 has no hits.
BS06305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:54 Download gff for
BS06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 1..867 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:34 Download gff for
BS06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 1..867 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:32 Download gff for
BS06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..958 | 9..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:43 Download gff for
BS06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..958 | 9..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:43 Download gff for
BS06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21026403..21027021 | 9..630 | 99 | <- | Plus |
X | 21027738..21027844 | 631..737 | 100 | <- | Plus |
X | 21027903..21027952 | 738..787 | 100 | <- | Plus |
X | 21028180..21028275 | 788..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:32 Download gff for
BS06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20897430..20898048 | 9..630 | 99 | <- | Plus |
arm_X | 20898765..20898871 | 631..737 | 100 | <- | Plus |
arm_X | 20898930..20898979 | 738..787 | 100 | <- | Plus |
arm_X | 20899207..20899302 | 788..882 | 98 | | Plus |
BS06305.5prime Sequence
874 bp (790 high quality bases) assembled on 2005-12-03
> BS06305.5prime
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
ACATCGAAAAGGATCCCTTCCCAC
BS06305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-PA | 867 | CG1532-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 1236 | CG1532-RB | 87..942 | 17..871 | 4255 | 99.9 | Plus |
CG1532-RA | 1073 | CG1532-RA | 87..942 | 17..871 | 4255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21026419..21027022 | 871..269 | 2970 | 99.8 | Minus |
X | 23542271 | X | 21027737..21027845 | 270..162 | 545 | 100 | Minus |
X | 23542271 | X | 21028178..21028275 | 114..17 | 490 | 100 | Minus |
X | 23542271 | X | 21027902..21027953 | 163..112 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:44:28 has no hits.
BS06305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:56 Download gff for
BS06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:35 Download gff for
BS06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:33:17 Download gff for
BS06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..945 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:45:06 Download gff for
BS06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..945 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:45:06 Download gff for
BS06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21026416..21027021 | 270..874 | 99 | <- | Minus |
X | 21027738..21027844 | 163..269 | 100 | <- | Minus |
X | 21027903..21027952 | 113..162 | 100 | <- | Minus |
X | 21028180..21028275 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:33:17 Download gff for
BS06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20897443..20898048 | 270..874 | 99 | <- | Minus |
arm_X | 20898765..20898871 | 163..269 | 100 | <- | Minus |
arm_X | 20898930..20898979 | 113..162 | 100 | <- | Minus |
arm_X | 20899207..20899302 | 17..112 | 100 | | Minus |
BS06305.complete Sequence
899 bp (899 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635438
> BS06305.complete
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
AACATCGAAAAGGATCCCTTCCAACCGAAATGAAAGCTTTCTAGACCAT
BS06305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 867 | CG1532-PB | 1..867 | 17..883 | 4335 | 100 | Plus |
CG1532-RA | 867 | CG1532-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 1236 | CG1532-RB | 87..953 | 17..883 | 4335 | 100 | Plus |
CG1532-RA | 1073 | CG1532-RA | 87..953 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21026408..21027022 | 883..269 | 3075 | 100 | Minus |
X | 23542271 | X | 21027737..21027845 | 270..162 | 545 | 100 | Minus |
X | 23542271 | X | 21028178..21028275 | 114..17 | 490 | 100 | Minus |
X | 23542271 | X | 21027902..21027953 | 163..112 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:26:39 has no hits.
BS06305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:29 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:58 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 72..943 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:11 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..952 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:29 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 72..943 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:50 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..952 | 17..882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:50 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21026409..21027021 | 270..882 | 100 | <- | Minus |
X | 21027738..21027844 | 163..269 | 100 | <- | Minus |
X | 21027903..21027952 | 113..162 | 100 | <- | Minus |
X | 21028180..21028275 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:11 Download gff for
BS06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20897436..20898048 | 270..882 | 100 | <- | Minus |
arm_X | 20898765..20898871 | 163..269 | 100 | <- | Minus |
arm_X | 20898930..20898979 | 113..162 | 100 | <- | Minus |
arm_X | 20899207..20899302 | 17..112 | 100 | | Minus |
BS06305.pep Sequence
Translation from 16 to 882
> BS06305.pep
MSAISGRALHYVFKIGDRAKNAFFFRQILGMTVLRHEEFKEGCDAACNGP
YDNRWSKTMVGYGPESSHFVIELTYNYGVSSYEMGNDFGGVTIHSKDILS
RAAEHSYPVTQVSGKAGSLLTSPDGYKFYVIDQASASSDPVQSVELNVSN
LQNSRKYWHDLLQLKVLEENEASVRLSYGEQQASLEITQISEPINRAKAY
GRIAFAIPAAQQPPLQEAVKAAGGAILTPLITLDTPGKATVTVVILGDPD
GHEICFVDEEGFGQLSQVESDGDKRLDRNIEKDPFQPK*
BS06305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-PB | 288 | CG1532-PB | 1..288 | 1..288 | 1493 | 100 | Plus |
CG1532-PA | 288 | CG1532-PA | 1..288 | 1..288 | 1493 | 100 | Plus |