Clone BS06305 Report

Search the DGRC for BS06305

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG1532-RA
Protein status:BS06305.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06305.3prime Sequence

889 bp (888 high quality bases) assembled on 2005-12-03

> BS06305.3prime
ATGGTCTAGAAAGCTTTCATTTCGGTTGGAAGGGATCCTTTTCGATGTTT
CGATCCAGTCGCTTATCGCCATCGGACTCCACCTGAGATAGCTGGCCGAA
GCCCTCCTCGTCGACAAAGCAGATCTCATGACCATCGGGGTCACCGAGAA
TTACCACCGTAACGGTGGCCTTTCCTGGCGTATCCAGGGTAATCAGAGGT
GTTAGAATGGCCCCGCCAGCTGCTTTAACCGCTTCTTGGAGAGGTGGCTG
CTGGGCCGCCGGAATGGCAAAGGCGATTCGTCCATAGGCCTTAGCTCTAT
TAATTGGCTCTGAGATCTGGGTGATCTCCAGTGAAGCCTGCTGTTCACCG
TAACTCAAACGCACGCTTGCTTCGTTCTCCTCGAGAACTTTCAGTTGCAG
CAAATCGTGCCAGTATTTGCGCGAGTTTTGAAGATTGCTCACATTAAGCT
CCACCGATTGGACAGGATCAGAGCTGGCAGAGGCCTGATCGATCACATAG
AACTTGTAGCCATCGGGCGAGGTCAGCAGACTACCGGCTTTTCCAGACAC
CTGTGTCACAGGATACGAGTGCTCGGCGGCGCGGGAAAGGATATCCTTGG
AGTGTATGGTCACGCCCCCAAAATCATTGCCCATTTCGTAGCTGCTCACT
CCATAGTTATACGTGAGTTCGATGACGAAATGCGAACTTTCGGGTCCATA
ACCCACCATTGTTTTGCTCCACCGATTGTCATAGGGCCCGTTGCAAGCTG
CGTCGCATCCCTCCTTGAACTCCTCATGCCGCAGCACCGTCATTCCCAAG
ATTTGCCGAAAGAAGAAGGCGTTTTTCGCCCGATCTCCGATTTTGACACA
TAGTGCAGGGCGCGTCCCGATATGGCCGACATGTCGACT

BS06305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PA 867 CG1532-RA 38..867 846..17 4150 100 Minus
CG1532-PA 867 CG1532-RA 1..37 882..846 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 1236 CG1532-RB 87..953 882..17 4310 99.9 Minus
CG1532-RA 1073 CG1532-RA 87..953 882..17 4310 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026408..21027022 17..631 3075 100 Plus
X 23542271 X 21027737..21027845 630..738 545 100 Plus
X 23542271 X 21028178..21028275 786..882 440 99 Plus
X 23542271 X 21027902..21027953 737..788 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:11:54 has no hits.

BS06305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:54 Download gff for BS06305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 1..867 17..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:34 Download gff for BS06305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 1..867 17..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:32 Download gff for BS06305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..958 9..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:43 Download gff for BS06305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..958 9..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:43 Download gff for BS06305.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21026403..21027021 9..630 99 <- Plus
X 21027738..21027844 631..737 100 <- Plus
X 21027903..21027952 738..787 100 <- Plus
X 21028180..21028275 788..882 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:32 Download gff for BS06305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897430..20898048 9..630 99 <- Plus
arm_X 20898765..20898871 631..737 100 <- Plus
arm_X 20898930..20898979 738..787 100 <- Plus
arm_X 20899207..20899302 788..882 98   Plus

BS06305.5prime Sequence

874 bp (790 high quality bases) assembled on 2005-12-03

> BS06305.5prime
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
ACATCGAAAAGGATCCCTTCCCAC

BS06305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PA 867 CG1532-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 1236 CG1532-RB 87..942 17..871 4255 99.9 Plus
CG1532-RA 1073 CG1532-RA 87..942 17..871 4255 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026419..21027022 871..269 2970 99.8 Minus
X 23542271 X 21027737..21027845 270..162 545 100 Minus
X 23542271 X 21028178..21028275 114..17 490 100 Minus
X 23542271 X 21027902..21027953 163..112 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:44:28 has no hits.

BS06305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:56 Download gff for BS06305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 1..859 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:35 Download gff for BS06305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 1..859 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:33:17 Download gff for BS06305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..945 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:45:06 Download gff for BS06305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..945 17..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:45:06 Download gff for BS06305.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21026416..21027021 270..874 99 <- Minus
X 21027738..21027844 163..269 100 <- Minus
X 21027903..21027952 113..162 100 <- Minus
X 21028180..21028275 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:33:17 Download gff for BS06305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897443..20898048 270..874 99 <- Minus
arm_X 20898765..20898871 163..269 100 <- Minus
arm_X 20898930..20898979 113..162 100 <- Minus
arm_X 20899207..20899302 17..112 100   Minus

BS06305.complete Sequence

899 bp (899 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635438

> BS06305.complete
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
AACATCGAAAAGGATCCCTTCCAACCGAAATGAAAGCTTTCTAGACCAT

BS06305.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 867 CG1532-PB 1..867 17..883 4335 100 Plus
CG1532-RA 867 CG1532-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 1236 CG1532-RB 87..953 17..883 4335 100 Plus
CG1532-RA 1073 CG1532-RA 87..953 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026408..21027022 883..269 3075 100 Minus
X 23542271 X 21027737..21027845 270..162 545 100 Minus
X 23542271 X 21028178..21028275 114..17 490 100 Minus
X 23542271 X 21027902..21027953 163..112 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:26:39 has no hits.

BS06305.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:29 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:58 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 72..943 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:11 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..952 17..882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:29 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 72..943 17..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:50 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..952 17..882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:50 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
X 21026409..21027021 270..882 100 <- Minus
X 21027738..21027844 163..269 100 <- Minus
X 21027903..21027952 113..162 100 <- Minus
X 21028180..21028275 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:11 Download gff for BS06305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897436..20898048 270..882 100 <- Minus
arm_X 20898765..20898871 163..269 100 <- Minus
arm_X 20898930..20898979 113..162 100 <- Minus
arm_X 20899207..20899302 17..112 100   Minus

BS06305.pep Sequence

Translation from 16 to 882

> BS06305.pep
MSAISGRALHYVFKIGDRAKNAFFFRQILGMTVLRHEEFKEGCDAACNGP
YDNRWSKTMVGYGPESSHFVIELTYNYGVSSYEMGNDFGGVTIHSKDILS
RAAEHSYPVTQVSGKAGSLLTSPDGYKFYVIDQASASSDPVQSVELNVSN
LQNSRKYWHDLLQLKVLEENEASVRLSYGEQQASLEITQISEPINRAKAY
GRIAFAIPAAQQPPLQEAVKAAGGAILTPLITLDTPGKATVTVVILGDPD
GHEICFVDEEGFGQLSQVESDGDKRLDRNIEKDPFQPK*

BS06305.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PB 288 CG1532-PB 1..288 1..288 1493 100 Plus
CG1532-PA 288 CG1532-PA 1..288 1..288 1493 100 Plus