Clone Sequence Records
BS06307.3prime Sequence
975 bp (827 high quality bases) assembled on 2005-12-03
> BS06307.3prime
ATGGTCTAGAAAGCTTCTACAGAATGGGGTAGCTGCACTCGCTGGCGATG
CCGCAGAATCCACCTGCATTCCGGAGGATGCGCATAAAGCCGCCCTCGCC
CCAATTCTGAGAGTACGAGTTCTTGATGATCCAGTAGTCGCGTCCATTTT
CCGTTCCATAGCCCACCACGGTTACCGAGTGATTCAGTTCGCCCTGATTG
CACTCCTCGTCCTCGTAGATGCCACCGCTGTACTGCTCAAACGAAATGGT
GTCCGCGTTCATGGAGCACGCCAACGGTCCCAACGTGGCAATCACCTCCT
TCATCTTCTCCTCATCCCCGGGAGTAATGGTGGCATAATCGCGAATTTTC
ACCAGACTCTCGCGCGGTGGACGTCCGGCGGTTTCGTTCTGACGGCACTG
CATCTCCGTCTGTGTGTACGGATATTTGTTGGCCAGCGTTACACCGTGAT
CGCGTATGTACTCGAAACCGTACTCCTGGAAGCCACCGTCACAGCCCATG
TTGCCGTAGTCATCGGCACAGTCCACCAGATTCTGCTGCGACAGCGAGGC
CAGCACTCCAGTCCGCCGGAATAGATGTCCTTCGAGCGCTCCTGTGGTGG
CGAACGACCAGCAGGCACCGCATCCCACACCCTGGAATCCCGGTGGCGTC
ACTCCGCCCTTCTCGCGCCAATCGAACATCTCGGGAAGATTGGCACTCGC
CGGATTCCTGGCAGTCACAAAGTTGATATGGCCATTCGTATATCTCTCGC
CAAATTCGGAGATTTTGGAGCCCAGCAAGGTGGCTATCTCCTTTCTGGTC
ATGTCGGCCAGCGTATTGACGCCCAGCCGGAATCCGGACACGCCGTTGTC
GGCGTTCTTATTGCTCAGCGTGATCAGCGACATCTTGGCCGCGAAGATGC
TCTCGCGATAGACTCGCTCCTCATCCGAGTACACCTTGCCCGTCTGCCGG
AGGAAGTCGTCGAAGTTTTGCACAT
BS06307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-PA | 1059 | CG6347-RA | 101..1059 | 975..17 | 4795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1312 | CG6347-RA | 209..1167 | 975..17 | 4795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13838489..13839218 | 746..17 | 3650 | 100 | Minus |
2R | 25286936 | 2R | 13837819..13838048 | 975..746 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:03:06 has no hits.
BS06307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:59 Download gff for
BS06307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 101..1059 | 17..975 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:39 Download gff for
BS06307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 101..1059 | 17..975 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:51 Download gff for
BS06307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 209..1170 | 12..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:03 Download gff for
BS06307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 209..1170 | 12..975 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:03 Download gff for
BS06307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13837819..13838047 | 747..975 | 100 | -> | Minus |
2R | 13838489..13839221 | 12..746 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:51 Download gff for
BS06307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9725324..9725552 | 747..975 | 100 | -> | Minus |
arm_2R | 9725994..9726726 | 12..746 | 99 | | Minus |
BS06307.5prime Sequence
884 bp (743 high quality bases) assembled on 2005-12-03
> BS06307.5prime
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACG
BS06307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-PA | 1059 | CG6347-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1312 | CG6347-RA | 109..976 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13838489..13839027 | 346..884 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 13837719..13838048 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:02:31 has no hits.
BS06307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:00 Download gff for
BS06307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:40 Download gff for
BS06307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:06:53 Download gff for
BS06307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..976 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:28 Download gff for
BS06307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..976 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:28 Download gff for
BS06307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13837714..13838047 | 12..345 | 99 | -> | Plus |
2R | 13838489..13839027 | 346..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:06:53 Download gff for
BS06307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9725219..9725552 | 12..345 | 99 | -> | Plus |
arm_2R | 9725994..9726532 | 346..884 | 100 | | Plus |
BS06307.complete Sequence
1091 bp (1091 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635439
> BS06307.complete
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACGAGGAGTGCAATCAGGG
CGAACTGAATCACTCGGTAACCGTGGTGGGCTATGGAACGGAAAATGGAC
GCGACTACTGGATCATCAAGAACTCGTACTCTCAGAATTGGGGCGAGGGC
GGCTTTATGCGCATCCTCCGGAATGCAGGTGGATTCTGCGGCATCGCCAG
CGAGTGCAGCTACCCCATTCTGTAGAAGCTTTCTAGACCAT
BS06307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1059 | CG6347-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1312 | CG6347-RA | 109..1167 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13838489..13839218 | 346..1075 | 3650 | 100 | Plus |
2R | 25286936 | 2R | 13837719..13838048 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:27:43 has no hits.
BS06307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:31 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:00 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 107..1168 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:10 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..1167 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:32 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 107..1168 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:33 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..1167 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:33 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13837719..13838047 | 17..345 | 100 | -> | Plus |
2R | 13838489..13839218 | 346..1075 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:10 Download gff for
BS06307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9725224..9725552 | 17..345 | 100 | -> | Plus |
arm_2R | 9725994..9726723 | 346..1075 | 100 | | Plus |
BS06307.pep Sequence
Translation from 16 to 1074
> BS06307.pep
MRMCSTMWLQMTLGLALLGAVSLQQLQSFPKLCDVQNFDDFLRQTGKVYS
DEERVYRESIFAAKMSLITLSNKNADNGVSGFRLGVNTLADMTRKEIATL
LGSKISEFGERYTNGHINFVTARNPASANLPEMFDWREKGGVTPPGFQGV
GCGACWSFATTGALEGHLFRRTGVLASLSQQNLVDCADDYGNMGCDGGFQ
EYGFEYIRDHGVTLANKYPYTQTEMQCRQNETAGRPPRESLVKIRDYATI
TPGDEEKMKEVIATLGPLACSMNADTISFEQYSGGIYEDEECNQGELNHS
VTVVGYGTENGRDYWIIKNSYSQNWGEGGFMRILRNAGGFCGIASECSYP
IL*
BS06307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-PA | 352 | CG6347-PA | 1..352 | 1..352 | 1883 | 100 | Plus |
CG4847-PE | 390 | CG4847-PE | 74..390 | 30..352 | 733 | 46.2 | Plus |
CG4847-PC | 390 | CG4847-PC | 74..390 | 30..352 | 733 | 46.2 | Plus |
CG4847-PA | 390 | CG4847-PA | 74..390 | 30..352 | 733 | 46.2 | Plus |
CG4847-PD | 420 | CG4847-PD | 104..420 | 30..352 | 733 | 46.2 | Plus |