Clone BS06307 Report

Search the DGRC for BS06307

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG6347-RA
Protein status:BS06307.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06307.3prime Sequence

975 bp (827 high quality bases) assembled on 2005-12-03

> BS06307.3prime
ATGGTCTAGAAAGCTTCTACAGAATGGGGTAGCTGCACTCGCTGGCGATG
CCGCAGAATCCACCTGCATTCCGGAGGATGCGCATAAAGCCGCCCTCGCC
CCAATTCTGAGAGTACGAGTTCTTGATGATCCAGTAGTCGCGTCCATTTT
CCGTTCCATAGCCCACCACGGTTACCGAGTGATTCAGTTCGCCCTGATTG
CACTCCTCGTCCTCGTAGATGCCACCGCTGTACTGCTCAAACGAAATGGT
GTCCGCGTTCATGGAGCACGCCAACGGTCCCAACGTGGCAATCACCTCCT
TCATCTTCTCCTCATCCCCGGGAGTAATGGTGGCATAATCGCGAATTTTC
ACCAGACTCTCGCGCGGTGGACGTCCGGCGGTTTCGTTCTGACGGCACTG
CATCTCCGTCTGTGTGTACGGATATTTGTTGGCCAGCGTTACACCGTGAT
CGCGTATGTACTCGAAACCGTACTCCTGGAAGCCACCGTCACAGCCCATG
TTGCCGTAGTCATCGGCACAGTCCACCAGATTCTGCTGCGACAGCGAGGC
CAGCACTCCAGTCCGCCGGAATAGATGTCCTTCGAGCGCTCCTGTGGTGG
CGAACGACCAGCAGGCACCGCATCCCACACCCTGGAATCCCGGTGGCGTC
ACTCCGCCCTTCTCGCGCCAATCGAACATCTCGGGAAGATTGGCACTCGC
CGGATTCCTGGCAGTCACAAAGTTGATATGGCCATTCGTATATCTCTCGC
CAAATTCGGAGATTTTGGAGCCCAGCAAGGTGGCTATCTCCTTTCTGGTC
ATGTCGGCCAGCGTATTGACGCCCAGCCGGAATCCGGACACGCCGTTGTC
GGCGTTCTTATTGCTCAGCGTGATCAGCGACATCTTGGCCGCGAAGATGC
TCTCGCGATAGACTCGCTCCTCATCCGAGTACACCTTGCCCGTCTGCCGG
AGGAAGTCGTCGAAGTTTTGCACAT

BS06307.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-PA 1059 CG6347-RA 101..1059 975..17 4795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1312 CG6347-RA 209..1167 975..17 4795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13838489..13839218 746..17 3650 100 Minus
2R 25286936 2R 13837819..13838048 975..746 1150 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:03:06 has no hits.

BS06307.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:36:59 Download gff for BS06307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 101..1059 17..975 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:39 Download gff for BS06307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 101..1059 17..975 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:51 Download gff for BS06307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 209..1170 12..975 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:03 Download gff for BS06307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 209..1170 12..975 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:03 Download gff for BS06307.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13837819..13838047 747..975 100 -> Minus
2R 13838489..13839221 12..746 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:51 Download gff for BS06307.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9725324..9725552 747..975 100 -> Minus
arm_2R 9725994..9726726 12..746 99   Minus

BS06307.5prime Sequence

884 bp (743 high quality bases) assembled on 2005-12-03

> BS06307.5prime
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACG

BS06307.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-PA 1059 CG6347-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1312 CG6347-RA 109..976 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13838489..13839027 346..884 2695 100 Plus
2R 25286936 2R 13837719..13838048 17..346 1650 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:02:31 has no hits.

BS06307.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:00 Download gff for BS06307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:40 Download gff for BS06307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:06:53 Download gff for BS06307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..976 17..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:28 Download gff for BS06307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..976 17..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:28 Download gff for BS06307.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13837714..13838047 12..345 99 -> Plus
2R 13838489..13839027 346..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:06:53 Download gff for BS06307.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9725219..9725552 12..345 99 -> Plus
arm_2R 9725994..9726532 346..884 100   Plus

BS06307.complete Sequence

1091 bp (1091 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635439

> BS06307.complete
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACGAGGAGTGCAATCAGGG
CGAACTGAATCACTCGGTAACCGTGGTGGGCTATGGAACGGAAAATGGAC
GCGACTACTGGATCATCAAGAACTCGTACTCTCAGAATTGGGGCGAGGGC
GGCTTTATGCGCATCCTCCGGAATGCAGGTGGATTCTGCGGCATCGCCAG
CGAGTGCAGCTACCCCATTCTGTAGAAGCTTTCTAGACCAT

BS06307.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1059 CG6347-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1312 CG6347-RA 109..1167 17..1075 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13838489..13839218 346..1075 3650 100 Plus
2R 25286936 2R 13837719..13838048 17..346 1650 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:27:43 has no hits.

BS06307.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:31 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:00 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 107..1168 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:10 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..1167 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:32 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 107..1168 17..1080 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:33 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..1167 17..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:33 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13837719..13838047 17..345 100 -> Plus
2R 13838489..13839218 346..1075 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:10 Download gff for BS06307.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9725224..9725552 17..345 100 -> Plus
arm_2R 9725994..9726723 346..1075 100   Plus

BS06307.pep Sequence

Translation from 16 to 1074

> BS06307.pep
MRMCSTMWLQMTLGLALLGAVSLQQLQSFPKLCDVQNFDDFLRQTGKVYS
DEERVYRESIFAAKMSLITLSNKNADNGVSGFRLGVNTLADMTRKEIATL
LGSKISEFGERYTNGHINFVTARNPASANLPEMFDWREKGGVTPPGFQGV
GCGACWSFATTGALEGHLFRRTGVLASLSQQNLVDCADDYGNMGCDGGFQ
EYGFEYIRDHGVTLANKYPYTQTEMQCRQNETAGRPPRESLVKIRDYATI
TPGDEEKMKEVIATLGPLACSMNADTISFEQYSGGIYEDEECNQGELNHS
VTVVGYGTENGRDYWIIKNSYSQNWGEGGFMRILRNAGGFCGIASECSYP
IL*

BS06307.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-PA 352 CG6347-PA 1..352 1..352 1883 100 Plus
CG4847-PE 390 CG4847-PE 74..390 30..352 733 46.2 Plus
CG4847-PC 390 CG4847-PC 74..390 30..352 733 46.2 Plus
CG4847-PA 390 CG4847-PA 74..390 30..352 733 46.2 Plus
CG4847-PD 420 CG4847-PD 104..420 30..352 733 46.2 Plus