Clone BS06310 Report

Search the DGRC for BS06310

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptSpc25-RA
Protein status:BS06310.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06310.3prime Sequence

699 bp (698 high quality bases) assembled on 2005-12-03

> BS06310.3prime
ATGGTCTAGAAAGCTTTCAGGTGTGGCTCATCGGCGATGTGAGATCAATC
TCGATTATAGACTTGCAATTGTCTGCTTCCTTGGGCGGAGTAGTGGGAGC
ACGTGACTCCATAGCCATGTCCATGGCCAGCGAGATAAGCTGCTGCCACT
GCGCCACGTCCACATTTAGACTCTCGAGATGCTGACACAGTGAGTCCAGT
CCTTCCACATCGGTCGCCTTCAGATCAAAGGGTATCAACTGGTCGCGTTT
ATCGCCACGGAGTACAGTGACACCCTTCACACGTGCCGGCAGCGCTTCTT
GATTTATATAGGTTCTTGTTGTCTTCGACAGCGTGTGAATGCTTTCCATG
ATTTCGTTTTTGCGCTGTTTGGCCAGCATTTTCTGCTGTTTAAACCAATC
TTTCATGGCCAAATTGTGAAGTTTGGTGGCCTCCAGTTCTCGATCAAGTT
CCTCTATGAAGGAAACTCGCTTGTCCAACTCCTCCCGCCGCTCCATGAGC
ACTTTTTGCAACTTTCCCACTTTCCGCTGATGGCGCGAAGCTGCTTCCTT
GACATCCAACAAATTGCTGTTGAATTTAAAGACCTTTTTGATGAATTTCG
CCTCGAGGGCTTCCATGTGAATTTGTTTTTCGTACAAAGCCTTTACGCGC
CTTTCGTAACTCGATTCAGTCATAATAATTGCCATGTCGACTGATAACT

BS06310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7242-PA 669 CG7242-RA 1..669 685..17 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 968 CG7242-RA 92..760 685..17 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963041 343..17 1635 100 Minus
3R 32079331 3R 12962026..12962242 558..342 1085 100 Minus
3R 32079331 3R 12961836..12961962 685..559 635 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:31:54 has no hits.

BS06310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:06 Download gff for BS06310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:47 Download gff for BS06310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:05:54 Download gff for BS06310.3prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 11..685 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:22 Download gff for BS06310.3prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 11..685 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:22 Download gff for BS06310.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12962026..12962242 342..558 100 -> Minus
3R 12962717..12963044 11..341 99   Minus
3R 12961830..12961962 559..691 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:05:54 Download gff for BS06310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787552..8787684 559..691 96 -> Minus
arm_3R 8787748..8787964 342..558 100 -> Minus
arm_3R 8788439..8788766 11..341 99   Minus

BS06310.5prime Sequence

699 bp (698 high quality bases) assembled on 2005-12-03

> BS06310.5prime
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCTGAAAGCTTTCTAGACC

BS06310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7242-PA 669 CG7242-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 968 CG7242-RA 92..760 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963041 359..685 1635 100 Plus
3R 32079331 3R 12962026..12962242 144..360 1085 100 Plus
3R 32079331 3R 12961836..12961962 17..143 635 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:10:10 has no hits.

BS06310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:07 Download gff for BS06310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:49 Download gff for BS06310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:42 Download gff for BS06310.5prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:17 Download gff for BS06310.5prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 17..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:17 Download gff for BS06310.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12961830..12961962 11..143 96 -> Plus
3R 12962026..12962242 144..360 100 -> Plus
3R 12962717..12963044 361..691 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:42 Download gff for BS06310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787552..8787684 11..143 96 -> Plus
arm_3R 8787748..8787964 144..360 100 -> Plus
arm_3R 8788439..8788766 361..691 99   Plus

BS06310.complete Sequence

701 bp (701 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635440

> BS06310.complete
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCTGAAAGCTTTCTAGACCA
T

BS06310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 669 CG7242-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 968 CG7242-RA 92..760 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963041 359..685 1635 100 Plus
3R 32079331 3R 12962026..12962242 144..360 1085 100 Plus
3R 32079331 3R 12961836..12961962 17..143 635 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:36:50 has no hits.

BS06310.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:33 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:01 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 85..756 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:20 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..759 17..684 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:33 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 85..756 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:40 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..759 17..684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:40 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12962717..12963040 361..684 100   Plus
3R 12962026..12962242 144..360 100 -> Plus
3R 12961836..12961962 17..143 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:20 Download gff for BS06310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787558..8787684 17..143 100 -> Plus
arm_3R 8788439..8788762 361..684 100   Plus
arm_3R 8787748..8787964 144..360 100 -> Plus

BS06310.pep Sequence

Translation from 16 to 684

> BS06310.pep
MAIIMTESSYERRVKALYEKQIHMEALEAKFIKKVFKFNSNLLDVKEAAS
RHQRKVGKLQKVLMERREELDKRVSFIEELDRELEATKLHNLAMKDWFKQ
QKMLAKQRKNEIMESIHTLSKTTRTYINQEALPARVKGVTVLRGDKRDQL
IPFDLKATDVEGLDSLCQHLESLNVDVAQWQQLISLAMDMAMESRAPTTP
PKEADNCKSIIEIDLTSPMSHT*

BS06310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-PA 222 CG7242-PA 1..222 1..222 1116 100 Plus