Clone Sequence Records
BS06310.3prime Sequence
699 bp (698 high quality bases) assembled on 2005-12-03
> BS06310.3prime
ATGGTCTAGAAAGCTTTCAGGTGTGGCTCATCGGCGATGTGAGATCAATC
TCGATTATAGACTTGCAATTGTCTGCTTCCTTGGGCGGAGTAGTGGGAGC
ACGTGACTCCATAGCCATGTCCATGGCCAGCGAGATAAGCTGCTGCCACT
GCGCCACGTCCACATTTAGACTCTCGAGATGCTGACACAGTGAGTCCAGT
CCTTCCACATCGGTCGCCTTCAGATCAAAGGGTATCAACTGGTCGCGTTT
ATCGCCACGGAGTACAGTGACACCCTTCACACGTGCCGGCAGCGCTTCTT
GATTTATATAGGTTCTTGTTGTCTTCGACAGCGTGTGAATGCTTTCCATG
ATTTCGTTTTTGCGCTGTTTGGCCAGCATTTTCTGCTGTTTAAACCAATC
TTTCATGGCCAAATTGTGAAGTTTGGTGGCCTCCAGTTCTCGATCAAGTT
CCTCTATGAAGGAAACTCGCTTGTCCAACTCCTCCCGCCGCTCCATGAGC
ACTTTTTGCAACTTTCCCACTTTCCGCTGATGGCGCGAAGCTGCTTCCTT
GACATCCAACAAATTGCTGTTGAATTTAAAGACCTTTTTGATGAATTTCG
CCTCGAGGGCTTCCATGTGAATTTGTTTTTCGTACAAAGCCTTTACGCGC
CTTTCGTAACTCGATTCAGTCATAATAATTGCCATGTCGACTGATAACT
BS06310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7242-PA | 669 | CG7242-RA | 1..669 | 685..17 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 968 | CG7242-RA | 92..760 | 685..17 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12962715..12963041 | 343..17 | 1635 | 100 | Minus |
3R | 32079331 | 3R | 12962026..12962242 | 558..342 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 12961836..12961962 | 685..559 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:31:54 has no hits.
BS06310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:06 Download gff for
BS06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:47 Download gff for
BS06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:05:54 Download gff for
BS06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 11..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:22 Download gff for
BS06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 11..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:22 Download gff for
BS06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12962026..12962242 | 342..558 | 100 | -> | Minus |
3R | 12962717..12963044 | 11..341 | 99 | | Minus |
3R | 12961830..12961962 | 559..691 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:05:54 Download gff for
BS06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8787552..8787684 | 559..691 | 96 | -> | Minus |
arm_3R | 8787748..8787964 | 342..558 | 100 | -> | Minus |
arm_3R | 8788439..8788766 | 11..341 | 99 | | Minus |
BS06310.5prime Sequence
699 bp (698 high quality bases) assembled on 2005-12-03
> BS06310.5prime
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCTGAAAGCTTTCTAGACC
BS06310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7242-PA | 669 | CG7242-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 968 | CG7242-RA | 92..760 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12962715..12963041 | 359..685 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 12962026..12962242 | 144..360 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 12961836..12961962 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:10:10 has no hits.
BS06310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:07 Download gff for
BS06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:49 Download gff for
BS06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:42 Download gff for
BS06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:17 Download gff for
BS06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 17..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:17 Download gff for
BS06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12961830..12961962 | 11..143 | 96 | -> | Plus |
3R | 12962026..12962242 | 144..360 | 100 | -> | Plus |
3R | 12962717..12963044 | 361..691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:42 Download gff for
BS06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8787552..8787684 | 11..143 | 96 | -> | Plus |
arm_3R | 8787748..8787964 | 144..360 | 100 | -> | Plus |
arm_3R | 8788439..8788766 | 361..691 | 99 | | Plus |
BS06310.complete Sequence
701 bp (701 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635440
> BS06310.complete
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCTGAAAGCTTTCTAGACCA
T
BS06310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 669 | CG7242-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 968 | CG7242-RA | 92..760 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12962715..12963041 | 359..685 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 12962026..12962242 | 144..360 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 12961836..12961962 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:36:50 has no hits.
BS06310.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:33 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:01 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 85..756 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:20 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..759 | 17..684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:33 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 85..756 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:40 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..759 | 17..684 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:40 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12962717..12963040 | 361..684 | 100 | | Plus |
3R | 12962026..12962242 | 144..360 | 100 | -> | Plus |
3R | 12961836..12961962 | 17..143 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:20 Download gff for
BS06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8787558..8787684 | 17..143 | 100 | -> | Plus |
arm_3R | 8788439..8788762 | 361..684 | 100 | | Plus |
arm_3R | 8787748..8787964 | 144..360 | 100 | -> | Plus |
BS06310.pep Sequence
Translation from 16 to 684
> BS06310.pep
MAIIMTESSYERRVKALYEKQIHMEALEAKFIKKVFKFNSNLLDVKEAAS
RHQRKVGKLQKVLMERREELDKRVSFIEELDRELEATKLHNLAMKDWFKQ
QKMLAKQRKNEIMESIHTLSKTTRTYINQEALPARVKGVTVLRGDKRDQL
IPFDLKATDVEGLDSLCQHLESLNVDVAQWQQLISLAMDMAMESRAPTTP
PKEADNCKSIIEIDLTSPMSHT*
BS06310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-PA | 222 | CG7242-PA | 1..222 | 1..222 | 1116 | 100 | Plus |