Clone Sequence Records
BS06311.3prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-03
> BS06311.3prime
ATGGTCTAGAAAGCTTCTACTTCACGGGCTTCGACTTCCACAGGCCGTCG
TTGAGGAAGTGGTACGTCTCGATACCGATGCCTTTGTTCTTCGCCAGAAT
TTCCTGTGTGGATAACGTGAGGAGTCCAACGGCCAGGGCGTGCTCCTTGC
CCTCAGCCATGATGGCCACCACGGTGTCCTTGTCGGCCGGCGTCATACAG
GCGCCTGGCGATGTGAGGCCGGGACACATGACGTTCGCTCCGCTCAGGAC
GAAGCGGATGGCGCCTTTGTCCACTTGCTGCATGGTCACGAAGTAGGGGA
ACTTGTGCAGGAGGCGCAGGGTAGGCATCCAGGGGCCATCGCGGTGGCGA
AAGAACACCTGGTCGCCGGCTCCGTTTAGCAGCAGTTCGATGTGGTCATG
GCACTTGGCGATGCGGTACGAGTCCTTCTTGGGCAGGATCAGGTCGATGT
GACTCTCCAACTTGGGATAGGCCTCCAGCAACTTGGCACGTATGCCCTTC
TGCACAGACGACTTCAGCTGCTGAATGCTGGAAATGCTGTCCTTCTCTTC
GAATTTTTTGAACATGTCGACTGATAACT
BS06311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-PA | 549 | CG5941-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 798 | CG5941-RB | 78..626 | 565..17 | 2745 | 100 | Minus |
CG5941-RA | 1245 | CG5941-RA | 78..626 | 565..17 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6038262..6038565 | 402..99 | 1520 | 100 | Minus |
X | 23542271 | X | 6038041..6038193 | 554..402 | 765 | 100 | Minus |
X | 23542271 | X | 6038876..6038957 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:35:57 has no hits.
BS06311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:08 Download gff for
BS06311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:50 Download gff for
BS06311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:40 Download gff for
BS06311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 84..644 | 13..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:39 Download gff for
BS06311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 68..628 | 13..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:39 Download gff for
BS06311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6038041..6038193 | 402..554 | 100 | -> | Minus |
X | 6038263..6038565 | 99..401 | 100 | -> | Minus |
X | 6038876..6038959 | 13..98 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:40 Download gff for
BS06311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5932074..5932226 | 402..554 | 100 | -> | Minus |
arm_X | 5932296..5932598 | 99..401 | 100 | -> | Minus |
arm_X | 5932909..5932992 | 13..98 | 97 | | Minus |
BS06311.5prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-03
> BS06311.5prime
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGTAGAAGCTTTCTAGACC
BS06311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-PA | 549 | CG5941-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 798 | CG5941-RB | 78..626 | 17..565 | 2745 | 100 | Plus |
CG5941-RA | 1245 | CG5941-RA | 78..626 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6038262..6038565 | 180..483 | 1520 | 100 | Plus |
X | 23542271 | X | 6038041..6038193 | 28..180 | 765 | 100 | Plus |
X | 23542271 | X | 6038876..6038957 | 484..565 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:27:36 has no hits.
BS06311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:09 Download gff for
BS06311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:52 Download gff for
BS06311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:11 Download gff for
BS06311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 84..644 | 7..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:01 Download gff for
BS06311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 68..628 | 7..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:01 Download gff for
BS06311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6038041..6038193 | 28..180 | 100 | -> | Plus |
X | 6038263..6038565 | 181..483 | 100 | -> | Plus |
X | 6038876..6038959 | 484..569 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:11 Download gff for
BS06311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5932074..5932226 | 28..180 | 100 | -> | Plus |
arm_X | 5932296..5932598 | 181..483 | 100 | -> | Plus |
arm_X | 5932909..5932992 | 484..569 | 97 | | Plus |
BS06311.complete Sequence
581 bp (581 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635441
> BS06311.complete
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGTAGAAGCTTTCTAGACCAT
BS06311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 549 | CG5941-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG5941-RA | 549 | CG5941-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 798 | CG5941-RB | 78..626 | 17..565 | 2745 | 100 | Plus |
CG5941-RA | 1245 | CG5941-RA | 78..626 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6038262..6038565 | 180..483 | 1520 | 100 | Plus |
X | 23542271 | X | 6038041..6038193 | 28..180 | 765 | 100 | Plus |
X | 23542271 | X | 6038876..6038957 | 484..565 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:22:11 has no hits.
BS06311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:47 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:32 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 75..635 | 7..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:56 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 99..642 | 22..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:47 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 75..635 | 7..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:59 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 83..626 | 22..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:59 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6038038..6038193 | 22..180 | 97 | -> | Plus |
X | 6038263..6038565 | 181..483 | 100 | -> | Plus |
X | 6038876..6038957 | 484..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:56 Download gff for
BS06311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5932071..5932226 | 22..180 | 97 | -> | Plus |
arm_X | 5932296..5932598 | 181..483 | 100 | -> | Plus |
arm_X | 5932909..5932990 | 484..565 | 100 | | Plus |
BS06311.pep Sequence
Translation from 16 to 564
> BS06311.pep
MFKKFEEKDSISSIQQLKSSVQKGIRAKLLEAYPKLESHIDLILPKKDSY
RIAKCHDHIELLLNGAGDQVFFRHRDGPWMPTLRLLHKFPYFVTMQQVDK
GAIRFVLSGANVMCPGLTSPGACMTPADKDTVVAIMAEGKEHALAVGLLT
LSTQEILAKNKGIGIETYHFLNDGLWKSKPVK*
BS06311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-PB | 182 | CG5941-PB | 1..182 | 1..182 | 949 | 100 | Plus |
CG5941-PA | 182 | CG5941-PA | 1..182 | 1..182 | 949 | 100 | Plus |