Clone BS06311 Report

Search the DGRC for BS06311

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG5941-RA
Protein status:BS06311.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06311.3prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-03

> BS06311.3prime
ATGGTCTAGAAAGCTTCTACTTCACGGGCTTCGACTTCCACAGGCCGTCG
TTGAGGAAGTGGTACGTCTCGATACCGATGCCTTTGTTCTTCGCCAGAAT
TTCCTGTGTGGATAACGTGAGGAGTCCAACGGCCAGGGCGTGCTCCTTGC
CCTCAGCCATGATGGCCACCACGGTGTCCTTGTCGGCCGGCGTCATACAG
GCGCCTGGCGATGTGAGGCCGGGACACATGACGTTCGCTCCGCTCAGGAC
GAAGCGGATGGCGCCTTTGTCCACTTGCTGCATGGTCACGAAGTAGGGGA
ACTTGTGCAGGAGGCGCAGGGTAGGCATCCAGGGGCCATCGCGGTGGCGA
AAGAACACCTGGTCGCCGGCTCCGTTTAGCAGCAGTTCGATGTGGTCATG
GCACTTGGCGATGCGGTACGAGTCCTTCTTGGGCAGGATCAGGTCGATGT
GACTCTCCAACTTGGGATAGGCCTCCAGCAACTTGGCACGTATGCCCTTC
TGCACAGACGACTTCAGCTGCTGAATGCTGGAAATGCTGTCCTTCTCTTC
GAATTTTTTGAACATGTCGACTGATAACT

BS06311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-PA 549 CG5941-RA 1..549 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 798 CG5941-RB 78..626 565..17 2745 100 Minus
CG5941-RA 1245 CG5941-RA 78..626 565..17 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6038262..6038565 402..99 1520 100 Minus
X 23542271 X 6038041..6038193 554..402 765 100 Minus
X 23542271 X 6038876..6038957 98..17 410 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:35:57 has no hits.

BS06311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:08 Download gff for BS06311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:50 Download gff for BS06311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:40 Download gff for BS06311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 84..644 13..575 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:39 Download gff for BS06311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 68..628 13..575 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:39 Download gff for BS06311.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6038041..6038193 402..554 100 -> Minus
X 6038263..6038565 99..401 100 -> Minus
X 6038876..6038959 13..98 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:40 Download gff for BS06311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5932074..5932226 402..554 100 -> Minus
arm_X 5932296..5932598 99..401 100 -> Minus
arm_X 5932909..5932992 13..98 97   Minus

BS06311.5prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-03

> BS06311.5prime
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGTAGAAGCTTTCTAGACC

BS06311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-PA 549 CG5941-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 798 CG5941-RB 78..626 17..565 2745 100 Plus
CG5941-RA 1245 CG5941-RA 78..626 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6038262..6038565 180..483 1520 100 Plus
X 23542271 X 6038041..6038193 28..180 765 100 Plus
X 23542271 X 6038876..6038957 484..565 410 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:27:36 has no hits.

BS06311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:09 Download gff for BS06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:14:52 Download gff for BS06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:11 Download gff for BS06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 84..644 7..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:01 Download gff for BS06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 68..628 7..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:01 Download gff for BS06311.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6038041..6038193 28..180 100 -> Plus
X 6038263..6038565 181..483 100 -> Plus
X 6038876..6038959 484..569 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:11 Download gff for BS06311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5932074..5932226 28..180 100 -> Plus
arm_X 5932296..5932598 181..483 100 -> Plus
arm_X 5932909..5932992 484..569 97   Plus

BS06311.complete Sequence

581 bp (581 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635441

> BS06311.complete
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGTAGAAGCTTTCTAGACCAT

BS06311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 549 CG5941-PB 1..549 17..565 2745 100 Plus
CG5941-RA 549 CG5941-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 798 CG5941-RB 78..626 17..565 2745 100 Plus
CG5941-RA 1245 CG5941-RA 78..626 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6038262..6038565 180..483 1520 100 Plus
X 23542271 X 6038041..6038193 28..180 765 100 Plus
X 23542271 X 6038876..6038957 484..565 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:22:11 has no hits.

BS06311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:47 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:32 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 75..635 7..569 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:56 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 99..642 22..565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:47 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 75..635 7..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:59 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 83..626 22..565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:59 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
X 6038038..6038193 22..180 97 -> Plus
X 6038263..6038565 181..483 100 -> Plus
X 6038876..6038957 484..565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:56 Download gff for BS06311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5932071..5932226 22..180 97 -> Plus
arm_X 5932296..5932598 181..483 100 -> Plus
arm_X 5932909..5932990 484..565 100   Plus

BS06311.pep Sequence

Translation from 16 to 564

> BS06311.pep
MFKKFEEKDSISSIQQLKSSVQKGIRAKLLEAYPKLESHIDLILPKKDSY
RIAKCHDHIELLLNGAGDQVFFRHRDGPWMPTLRLLHKFPYFVTMQQVDK
GAIRFVLSGANVMCPGLTSPGACMTPADKDTVVAIMAEGKEHALAVGLLT
LSTQEILAKNKGIGIETYHFLNDGLWKSKPVK*

BS06311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-PB 182 CG5941-PB 1..182 1..182 949 100 Plus
CG5941-PA 182 CG5941-PA 1..182 1..182 949 100 Plus