Clone Sequence Records
BS06317.3prime Sequence
934 bp (867 high quality bases) assembled on 2005-12-03
> BS06317.3prime
ATGGTCTAGAAAGCTTTTATATGCTATCGCCAGTGCGCATGTGGGGACGA
CGGTGCCAGTGATTGGGATTATTGTACTCAATCAATCGGGTCAAATCAAA
GCCAGCTGGCACTATATTGGGTGGCTTAACTCCGCTCAACATGCGAGTTT
CTTTTCGAGCTGATGGTGGTATGGGAATGTCCGGAAAGGGAGACACATAC
ACCACCTTCTCCACGGGTTTGTCACTTTTCGGAGCAGGCGTGATGGTTTT
TGCTGGCTCCGGATCCTTCTTGTCAGAATCCTGGTCAAAATAGGCCTCCA
GGGCCATAGAAAACTGCTGCAAGCGAGAAACCTTGGCCTGGCAAGGTTTC
TGCTGCGAATCGATCCAAATTTCGGTGAAGGCGTGTTTTTGTAAGGCCTC
CGTTTCGGGATTGGAGATCAGGTGCTCTTTTCGGACTGTTACTGAGTGGT
CAAGGTCAAAGTGTTTTATGCATGGTATCTGGCTCGAGGAAAGTCCCGGA
ACATCTCTGGGACACAAGGGCACTGGTCTCTGCTTCTGCTCACTGATCGG
CGAAACGGTAAACTTCTTGGGAGACTTGAAACAGCCCGCAACCTGTGTGG
GCTTGCCAGCGGAGACGCCATCGCAGGTGGATGAGTCGCTGGAATGGACC
TCCAAAACGGGCGACTTTGGCTTTACGAAGACGTCGGAAGGCGTGGGCTT
CAAAGTATTTCCTGCGCCCTGGCCCAGCTGGGCGGGTGCACCAACCATTT
TTTTTTCCATGGAAATCTCATCCGCCGAGCCGGAATCAAAGTCCGCGGCG
CTGTCGCAGTCGCTCTCCGAGAGCGAGAGGCTAAGGTTGTCCATGATATC
TTCGCTTTGGTCGAACGAGTGGAAGGAGTCATTGTCATCGATATCCGAGT
GACTGGGTATCACAAGAGAGCTCATGTCGACTGA
BS06317.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-PA | 909 | CG5194-RA | 20..909 | 906..17 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 1113 | CG5194-RA | 78..987 | 925..16 | 4505 | 99.8 | Minus |
CG5194-RB | 1095 | CG5194-RB | 78..969 | 925..16 | 4225 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9009032..9009530 | 248..746 | 2495 | 100 | Plus |
3L | 28110227 | 3L | 9008750..9008981 | 16..247 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 9009581..9009761 | 745..925 | 830 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:54:01 has no hits.
BS06317.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:20 Download gff for
BS06317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:09 Download gff for
BS06317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:42 Download gff for
BS06317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 71..990 | 11..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:14 Download gff for
BS06317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 71..990 | 11..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:14 Download gff for
BS06317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9008747..9008981 | 11..247 | 99 | <- | Plus |
3L | 9009032..9009529 | 248..745 | 100 | <- | Plus |
3L | 9009582..9009768 | 746..933 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:42 Download gff for
BS06317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9001847..9002081 | 11..247 | 99 | <- | Plus |
arm_3L | 9002132..9002629 | 248..745 | 100 | <- | Plus |
arm_3L | 9002682..9002868 | 746..933 | 96 | | Plus |
BS06317.5prime Sequence
839 bp (786 high quality bases) assembled on 2005-12-03
> BS06317.5prime
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAANAGAAACTCGCA
TGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTG
BS06317.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-PA | 909 | CG5194-RA | 1..823 | 17..839 | 4096 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 1113 | CG5194-RA | 78..900 | 17..839 | 4104 | 99.9 | Plus |
CG5194-RB | 1095 | CG5194-RB | 78..882 | 17..839 | 3824 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9009032..9009530 | 694..196 | 2495 | 100 | Minus |
3L | 28110227 | 3L | 9009581..9009761 | 197..17 | 905 | 100 | Minus |
3L | 28110227 | 3L | 9008837..9008981 | 839..695 | 714 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:01:49 has no hits.
BS06317.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:21 Download gff for
BS06317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:11 Download gff for
BS06317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:06:44 Download gff for
BS06317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 71..900 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:11 Download gff for
BS06317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 71..900 | 9..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:11 Download gff for
BS06317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9008837..9008981 | 695..839 | 99 | <- | Minus |
3L | 9009032..9009529 | 197..694 | 100 | <- | Minus |
3L | 9009582..9009768 | 9..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:06:44 Download gff for
BS06317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9001937..9002081 | 695..839 | 99 | <- | Minus |
arm_3L | 9002132..9002629 | 197..694 | 100 | <- | Minus |
arm_3L | 9002682..9002868 | 9..196 | 97 | | Minus |
BS06317.complete Sequence
941 bp (941 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635442
> BS06317.complete
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAAAAGAAACTCGCA
TGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTG
ACCCGATTGATTGAGTACAATAATCCCAATCACTGGCACCGTCGTCCCCA
CATGCGCACTGGCGATAGCATATAAAAGCTTTCTAGACCAT
BS06317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 909 | CG5194-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
CG5194-RB | 891 | CG5194-PB | 1..891 | 17..925 | 4240 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 1113 | CG5194-RA | 78..987 | 17..926 | 4550 | 100 | Plus |
CG5194-RB | 1095 | CG5194-RB | 78..969 | 17..926 | 4245 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9009032..9009530 | 694..196 | 2495 | 100 | Minus |
3L | 28110227 | 3L | 9008750..9008981 | 926..695 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 9009581..9009761 | 197..17 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:05:58 has no hits.
BS06317.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:34 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:03 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 84..1003 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:19 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 78..984 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:34 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 84..1003 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:41 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 78..984 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:41 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9008753..9008981 | 695..923 | 100 | <- | Minus |
3L | 9009032..9009529 | 197..694 | 100 | <- | Minus |
3L | 9009582..9009761 | 17..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:19 Download gff for
BS06317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9001853..9002081 | 695..923 | 100 | <- | Minus |
arm_3L | 9002132..9002629 | 197..694 | 100 | <- | Minus |
arm_3L | 9002682..9002861 | 17..196 | 100 | | Minus |
BS06317.pep Sequence
Translation from 16 to 924
> BS06317.pep
MSSLVDTSHSDIDDNDSFHSFDQSEDIMDNLSLSLSESDCDSAADFDSGS
ADEISMEKKMVGAPAQLGQGAGNTLKPTPSDVFVKPKSPVLEVHSSDSST
CDGVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQI
PCIKHFDLDHSVTVRKEHLISNPETEALQKHAFTEIWIDSQQKPCQAKVS
RLQQFSMALEAYFDQDSDKKDPEPAKTITPAPKSDKPVEKVVYVSPFPDI
PIPPSARKETRMLSGVKPPNIVPAGFDLTRLIEYNNPNHWHRRPHMRTGD
SI*
BS06317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-PA | 302 | CG5194-PA | 1..302 | 1..302 | 1594 | 100 | Plus |
CG5194-PB | 296 | CG5194-PB | 1..296 | 1..302 | 1547 | 98 | Plus |