Clone BS06317 Report

Search the DGRC for BS06317

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5194-RA
Protein status:BS06317.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06317.3prime Sequence

934 bp (867 high quality bases) assembled on 2005-12-03

> BS06317.3prime
ATGGTCTAGAAAGCTTTTATATGCTATCGCCAGTGCGCATGTGGGGACGA
CGGTGCCAGTGATTGGGATTATTGTACTCAATCAATCGGGTCAAATCAAA
GCCAGCTGGCACTATATTGGGTGGCTTAACTCCGCTCAACATGCGAGTTT
CTTTTCGAGCTGATGGTGGTATGGGAATGTCCGGAAAGGGAGACACATAC
ACCACCTTCTCCACGGGTTTGTCACTTTTCGGAGCAGGCGTGATGGTTTT
TGCTGGCTCCGGATCCTTCTTGTCAGAATCCTGGTCAAAATAGGCCTCCA
GGGCCATAGAAAACTGCTGCAAGCGAGAAACCTTGGCCTGGCAAGGTTTC
TGCTGCGAATCGATCCAAATTTCGGTGAAGGCGTGTTTTTGTAAGGCCTC
CGTTTCGGGATTGGAGATCAGGTGCTCTTTTCGGACTGTTACTGAGTGGT
CAAGGTCAAAGTGTTTTATGCATGGTATCTGGCTCGAGGAAAGTCCCGGA
ACATCTCTGGGACACAAGGGCACTGGTCTCTGCTTCTGCTCACTGATCGG
CGAAACGGTAAACTTCTTGGGAGACTTGAAACAGCCCGCAACCTGTGTGG
GCTTGCCAGCGGAGACGCCATCGCAGGTGGATGAGTCGCTGGAATGGACC
TCCAAAACGGGCGACTTTGGCTTTACGAAGACGTCGGAAGGCGTGGGCTT
CAAAGTATTTCCTGCGCCCTGGCCCAGCTGGGCGGGTGCACCAACCATTT
TTTTTTCCATGGAAATCTCATCCGCCGAGCCGGAATCAAAGTCCGCGGCG
CTGTCGCAGTCGCTCTCCGAGAGCGAGAGGCTAAGGTTGTCCATGATATC
TTCGCTTTGGTCGAACGAGTGGAAGGAGTCATTGTCATCGATATCCGAGT
GACTGGGTATCACAAGAGAGCTCATGTCGACTGA

BS06317.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 909 CG5194-RA 20..909 906..17 4450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1113 CG5194-RA 78..987 925..16 4505 99.8 Minus
CG5194-RB 1095 CG5194-RB 78..969 925..16 4225 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 248..746 2495 100 Plus
3L 28110227 3L 9008750..9008981 16..247 1160 100 Plus
3L 28110227 3L 9009581..9009761 745..925 830 97.2 Plus
Blast to na_te.dros performed on 2015-02-02 17:54:01 has no hits.

BS06317.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:20 Download gff for BS06317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 1..909 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:09 Download gff for BS06317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 1..909 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:42 Download gff for BS06317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 71..990 11..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:14 Download gff for BS06317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 71..990 11..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:14 Download gff for BS06317.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9008747..9008981 11..247 99 <- Plus
3L 9009032..9009529 248..745 100 <- Plus
3L 9009582..9009768 746..933 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:42 Download gff for BS06317.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001847..9002081 11..247 99 <- Plus
arm_3L 9002132..9002629 248..745 100 <- Plus
arm_3L 9002682..9002868 746..933 96   Plus

BS06317.5prime Sequence

839 bp (786 high quality bases) assembled on 2005-12-03

> BS06317.5prime
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAANAGAAACTCGCA
TGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTG

BS06317.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 909 CG5194-RA 1..823 17..839 4096 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1113 CG5194-RA 78..900 17..839 4104 99.9 Plus
CG5194-RB 1095 CG5194-RB 78..882 17..839 3824 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 694..196 2495 100 Minus
3L 28110227 3L 9009581..9009761 197..17 905 100 Minus
3L 28110227 3L 9008837..9008981 839..695 714 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 13:01:49 has no hits.

BS06317.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:21 Download gff for BS06317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:11 Download gff for BS06317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:06:44 Download gff for BS06317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 71..900 9..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:11 Download gff for BS06317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 71..900 9..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:11 Download gff for BS06317.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9008837..9008981 695..839 99 <- Minus
3L 9009032..9009529 197..694 100 <- Minus
3L 9009582..9009768 9..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:06:44 Download gff for BS06317.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001937..9002081 695..839 99 <- Minus
arm_3L 9002132..9002629 197..694 100 <- Minus
arm_3L 9002682..9002868 9..196 97   Minus

BS06317.complete Sequence

941 bp (941 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635442

> BS06317.complete
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAAAAGAAACTCGCA
TGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTG
ACCCGATTGATTGAGTACAATAATCCCAATCACTGGCACCGTCGTCCCCA
CATGCGCACTGGCGATAGCATATAAAAGCTTTCTAGACCAT

BS06317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 909 CG5194-PA 1..909 17..925 4545 100 Plus
CG5194-RB 891 CG5194-PB 1..891 17..925 4240 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1113 CG5194-RA 78..987 17..926 4550 100 Plus
CG5194-RB 1095 CG5194-RB 78..969 17..926 4245 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 694..196 2495 100 Minus
3L 28110227 3L 9008750..9008981 926..695 1160 100 Minus
3L 28110227 3L 9009581..9009761 197..17 905 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:05:58 has no hits.

BS06317.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:34 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:03 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 84..1003 9..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:19 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 78..984 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:34 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 84..1003 9..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:41 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 78..984 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:41 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9008753..9008981 695..923 100 <- Minus
3L 9009032..9009529 197..694 100 <- Minus
3L 9009582..9009761 17..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:19 Download gff for BS06317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001853..9002081 695..923 100 <- Minus
arm_3L 9002132..9002629 197..694 100 <- Minus
arm_3L 9002682..9002861 17..196 100   Minus

BS06317.pep Sequence

Translation from 16 to 924

> BS06317.pep
MSSLVDTSHSDIDDNDSFHSFDQSEDIMDNLSLSLSESDCDSAADFDSGS
ADEISMEKKMVGAPAQLGQGAGNTLKPTPSDVFVKPKSPVLEVHSSDSST
CDGVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQI
PCIKHFDLDHSVTVRKEHLISNPETEALQKHAFTEIWIDSQQKPCQAKVS
RLQQFSMALEAYFDQDSDKKDPEPAKTITPAPKSDKPVEKVVYVSPFPDI
PIPPSARKETRMLSGVKPPNIVPAGFDLTRLIEYNNPNHWHRRPHMRTGD
SI*

BS06317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 302 CG5194-PA 1..302 1..302 1594 100 Plus
CG5194-PB 296 CG5194-PB 1..296 1..302 1547 98 Plus