Clone BS06318 Report

Search the DGRC for BS06318

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG1896-RA
Protein status:BS06318.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06318.3prime Sequence

771 bp (770 high quality bases) assembled on 2005-12-03

> BS06318.3prime
ATGGTCTAGAAAGCTTTTAAGTTAAGGATAGTCGATAGCCTATCCACTGA
GCTGTAGGCTTTGTTGGCGGTAGCACCCATCCTCTGGGTATAGAGGAGCC
TCTTCCACAGTAGCTTATGTAAGAATCCCATGTGGAGCGAATTTCAAGAA
ATTTCCCCTTATTTAATTTGGGAGTTGGCAAGGATCGGCCGAAGAACACA
GCCTTCCATTGAGATTCAAGTGAAGCCACCTTCTTGGACTCCTTGACATG
GCCAGCTTGAGTCTCTTCTTGGACTCTGCGCCAAACAAGACGCATGTGGG
TCAGTTTTTGGCAAAGGGCGGCTCTGTCTCCTCCACGAGACTCGCAAAGT
TTCTCCAGAAGATCAAAGGTCTCCAAAATGGAGGCAGCATCGCGTTGTTT
TCGCAGGGATATGTGCTTCGCTTGTTCCAGTGCGGTATTTCGGGGCGGTT
CTATGGAGAACTTCTGTTCTGCAGCCTCAGATTTGACGGTTGCACGTATC
ACCCGATGTTGGCTTCGTCTATATAAGCGTCGCCGGCGTTTTCTTTGTTT
TTGTTCGTCGACTACTTGTTGGCCCGGTACTTGGTCAAGTTCATCCAGCA
GGGTTGCCGTGCTCCGCTGCAGCTCCTCCGCCCGGTGCACATCGAAATCG
CGACCTGCTCCACAGCTCTGTTGCTCCAGTTGCCCCAAACTCGATATAAC
TTGCTGAATCTTGGCTTTAACTTCACTTAATCTATGCTTTTTGTGCGGCG
GAGTCATGTCGACTGATAACT

BS06318.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-PA 741 CG1896-RA 1..741 757..17 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 835 CG1896-RA 38..778 757..17 3705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31744319..31744938 757..138 3100 100 Minus
3R 32079331 3R 31745000..31745121 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:53:12 has no hits.

BS06318.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:22 Download gff for BS06318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 17..757 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:12 Download gff for BS06318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 17..757 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:39 Download gff for BS06318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..778 17..757 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:08 Download gff for BS06318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..778 17..757 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:08 Download gff for BS06318.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31744319..31744938 138..757 100 -> Minus
3R 31745001..31745121 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:39 Download gff for BS06318.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27570041..27570660 138..757 100 -> Minus
arm_3R 27570723..27570843 17..137 100   Minus

BS06318.5prime Sequence

771 bp (770 high quality bases) assembled on 2005-12-03

> BS06318.5prime
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTTANAAGCTTTCTAGACC

BS06318.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-PA 741 CG1896-RA 1..740 17..756 3700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 835 CG1896-RA 38..777 17..756 3700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31744319..31744938 17..636 3100 100 Plus
3R 32079331 3R 31745000..31745120 636..756 605 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:37:19 has no hits.

BS06318.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:23 Download gff for BS06318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:14 Download gff for BS06318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:50 Download gff for BS06318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..777 17..756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:39 Download gff for BS06318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..777 17..756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:39 Download gff for BS06318.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31744319..31744938 17..636 100 -> Plus
3R 31745001..31745120 637..756 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:50 Download gff for BS06318.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27570041..27570660 17..636 100 -> Plus
arm_3R 27570723..27570842 637..756 100   Plus

BS06318.complete Sequence

773 bp (773 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635443

> BS06318.complete
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTTAAAAGCTTTCTAGACCAT

BS06318.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 741 CG1896-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 835 CG1896-RA 38..778 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31744319..31744938 17..636 3100 100 Plus
3R 32079331 3R 31745000..31745121 636..757 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:57:36 has no hits.

BS06318.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:15 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:41 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 33..773 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:20 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..776 17..755 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:15 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 33..773 17..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:44 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..776 17..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:44 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31744319..31744938 17..636 100 -> Plus
3R 31745001..31745119 637..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:20 Download gff for BS06318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27570041..27570660 17..636 100 -> Plus
arm_3R 27570723..27570841 637..755 100   Plus

BS06318.pep Sequence

Translation from 16 to 756

> BS06318.pep
MTPPHKKHRLSEVKAKIQQVISSLGQLEQQSCGAGRDFDVHRAEELQRST
ATLLDELDQVPGQQVVDEQKQRKRRRRLYRRSQHRVIRATVKSEAAEQKF
SIEPPRNTALEQAKHISLRKQRDAASILETFDLLEKLCESRGGDRAALCQ
KLTHMRLVWRRVQEETQAGHVKESKKVASLESQWKAVFFGRSLPTPKLNK
GKFLEIRSTWDSYISYCGRGSSIPRGWVLPPTKPTAQWIGYRLSLT*

BS06318.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-PA 246 CG1896-PA 1..246 1..246 1271 100 Plus