Clone Sequence Records
BS06318.3prime Sequence
771 bp (770 high quality bases) assembled on 2005-12-03
> BS06318.3prime
ATGGTCTAGAAAGCTTTTAAGTTAAGGATAGTCGATAGCCTATCCACTGA
GCTGTAGGCTTTGTTGGCGGTAGCACCCATCCTCTGGGTATAGAGGAGCC
TCTTCCACAGTAGCTTATGTAAGAATCCCATGTGGAGCGAATTTCAAGAA
ATTTCCCCTTATTTAATTTGGGAGTTGGCAAGGATCGGCCGAAGAACACA
GCCTTCCATTGAGATTCAAGTGAAGCCACCTTCTTGGACTCCTTGACATG
GCCAGCTTGAGTCTCTTCTTGGACTCTGCGCCAAACAAGACGCATGTGGG
TCAGTTTTTGGCAAAGGGCGGCTCTGTCTCCTCCACGAGACTCGCAAAGT
TTCTCCAGAAGATCAAAGGTCTCCAAAATGGAGGCAGCATCGCGTTGTTT
TCGCAGGGATATGTGCTTCGCTTGTTCCAGTGCGGTATTTCGGGGCGGTT
CTATGGAGAACTTCTGTTCTGCAGCCTCAGATTTGACGGTTGCACGTATC
ACCCGATGTTGGCTTCGTCTATATAAGCGTCGCCGGCGTTTTCTTTGTTT
TTGTTCGTCGACTACTTGTTGGCCCGGTACTTGGTCAAGTTCATCCAGCA
GGGTTGCCGTGCTCCGCTGCAGCTCCTCCGCCCGGTGCACATCGAAATCG
CGACCTGCTCCACAGCTCTGTTGCTCCAGTTGCCCCAAACTCGATATAAC
TTGCTGAATCTTGGCTTTAACTTCACTTAATCTATGCTTTTTGTGCGGCG
GAGTCATGTCGACTGATAACT
BS06318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-PA | 741 | CG1896-RA | 1..741 | 757..17 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 835 | CG1896-RA | 38..778 | 757..17 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31744319..31744938 | 757..138 | 3100 | 100 | Minus |
3R | 32079331 | 3R | 31745000..31745121 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:53:12 has no hits.
BS06318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:22 Download gff for
BS06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:12 Download gff for
BS06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:39 Download gff for
BS06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..778 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:08 Download gff for
BS06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..778 | 17..757 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:08 Download gff for
BS06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31744319..31744938 | 138..757 | 100 | -> | Minus |
3R | 31745001..31745121 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:39 Download gff for
BS06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27570041..27570660 | 138..757 | 100 | -> | Minus |
arm_3R | 27570723..27570843 | 17..137 | 100 | | Minus |
BS06318.5prime Sequence
771 bp (770 high quality bases) assembled on 2005-12-03
> BS06318.5prime
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTTANAAGCTTTCTAGACC
BS06318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-PA | 741 | CG1896-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 835 | CG1896-RA | 38..777 | 17..756 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31744319..31744938 | 17..636 | 3100 | 100 | Plus |
3R | 32079331 | 3R | 31745000..31745120 | 636..756 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:37:19 has no hits.
BS06318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:23 Download gff for
BS06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:14 Download gff for
BS06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:50 Download gff for
BS06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..777 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:39 Download gff for
BS06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..777 | 17..756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:39 Download gff for
BS06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31744319..31744938 | 17..636 | 100 | -> | Plus |
3R | 31745001..31745120 | 637..756 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:50 Download gff for
BS06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27570041..27570660 | 17..636 | 100 | -> | Plus |
arm_3R | 27570723..27570842 | 637..756 | 100 | | Plus |
BS06318.complete Sequence
773 bp (773 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635443
> BS06318.complete
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTTAAAAGCTTTCTAGACCAT
BS06318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 741 | CG1896-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 835 | CG1896-RA | 38..778 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31744319..31744938 | 17..636 | 3100 | 100 | Plus |
3R | 32079331 | 3R | 31745000..31745121 | 636..757 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:57:36 has no hits.
BS06318.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:15 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:41 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 33..773 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:20 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..776 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:15 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 33..773 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:44 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..776 | 17..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:44 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31744319..31744938 | 17..636 | 100 | -> | Plus |
3R | 31745001..31745119 | 637..755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:20 Download gff for
BS06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27570041..27570660 | 17..636 | 100 | -> | Plus |
arm_3R | 27570723..27570841 | 637..755 | 100 | | Plus |
BS06318.pep Sequence
Translation from 16 to 756
> BS06318.pep
MTPPHKKHRLSEVKAKIQQVISSLGQLEQQSCGAGRDFDVHRAEELQRST
ATLLDELDQVPGQQVVDEQKQRKRRRRLYRRSQHRVIRATVKSEAAEQKF
SIEPPRNTALEQAKHISLRKQRDAASILETFDLLEKLCESRGGDRAALCQ
KLTHMRLVWRRVQEETQAGHVKESKKVASLESQWKAVFFGRSLPTPKLNK
GKFLEIRSTWDSYISYCGRGSSIPRGWVLPPTKPTAQWIGYRLSLT*
BS06318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-PA | 246 | CG1896-PA | 1..246 | 1..246 | 1271 | 100 | Plus |