Clone BS06319 Report

Search the DGRC for BS06319

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:19
Vector:pDNR-Dual
Associated Gene/Transcripttwit-RA
Protein status:BS06319.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06319.3prime Sequence

531 bp (530 high quality bases) assembled on 2005-12-03

> BS06319.3prime
ATGGTCTAGAAAGCTTTTAGATGGCAAACTGTTGGATGAGGCCCGCGATG
GGCAGGAGCAGCAGCATCTCCAAAATGGATGCACCTGCTAAGGCTCCGTT
GCAGCGATCGGTGAGGCAGTCCTCGCAGAATATCCGCCGCACGTTCTTCT
CCGGACTGGTGATGTTGCACAGCTCCACGGGATCTGATTTGTTGGTGTAG
TAGCAGAATCGCTTGGTGATCAGCTTGCCATTATTTTCCTCCACGGTCTT
GCGGCAAACGGCCCTCTCGTGATCGGAGTTAATGGTGCCGTTGCAGCTCC
TTAGCAGATTTATATTCCGCTCCTTGATCAGGTCAGTGGGAATGTTGTCC
TCCTGGAAGGTCACGTCGCAGAAGTCCTCCGCCCCAATTGTGTCCGAGCT
ACAGTGCCAGCACTGCAGGTGATGCTTCTGGTGCTGCTCATTTATGGCTG
TGATGTGCCAGGCATTGGCCAGCAAGAAGAGACCAGCCAGAAAGGCTTTC
ATCGGCACCGCTGACATGTCGACTGATAACT

BS06319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9335-PA 501 CG9335-RA 1..501 517..17 2505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 1150 CG9335-RA 171..672 518..17 2510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20856418..20856635 234..17 1090 100 Minus
2L 23513712 2L 20856140..20856356 451..235 1085 100 Minus
2L 23513712 2L 20852748..20852818 518..448 355 100 Minus
Blast to na_te.dros performed 2015-02-11 21:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 203..273 72..2 111 68.9 Minus

BS06319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:24 Download gff for BS06319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 17..517 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:16 Download gff for BS06319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 17..517 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:38 Download gff for BS06319.3prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 13..524 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:46 Download gff for BS06319.3prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 13..524 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:46 Download gff for BS06319.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20852745..20852818 448..524 96 -> Minus
2L 20856144..20856356 235..447 100 -> Minus
2L 20856418..20856637 13..234 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:38 Download gff for BS06319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20852745..20852818 448..524 96 -> Minus
arm_2L 20856144..20856356 235..447 100 -> Minus
arm_2L 20856418..20856637 13..234 99   Minus

BS06319.5prime Sequence

531 bp (530 high quality bases) assembled on 2005-12-03

> BS06319.5prime
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCTAAAAGCTTTCTAGACC

BS06319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9335-PA 501 CG9335-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 1150 CG9335-RA 171..672 16..517 2510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20856418..20856635 300..517 1090 100 Plus
2L 23513712 2L 20856140..20856356 83..299 1085 100 Plus
2L 23513712 2L 20852748..20852818 16..86 355 100 Plus
Blast to na_te.dros performed 2015-02-12 00:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 203..272 462..531 106 68.5 Plus

BS06319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:25 Download gff for BS06319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 17..517 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:17 Download gff for BS06319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:52:55 Download gff for BS06319.5prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 10..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:08 Download gff for BS06319.5prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 10..521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:08 Download gff for BS06319.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20852745..20852818 10..86 96 -> Plus
2L 20856144..20856356 87..299 100 -> Plus
2L 20856418..20856637 300..521 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:52:55 Download gff for BS06319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20852745..20852818 10..86 96 -> Plus
arm_2L 20856144..20856356 87..299 100 -> Plus
arm_2L 20856418..20856637 300..521 99   Plus

BS06319.complete Sequence

533 bp (533 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635444

> BS06319.complete
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCTAAAAGCTTTCTAGACCAT

BS06319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 501 CG9335-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 1150 CG9335-RA 171..672 16..517 2510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20856418..20856635 300..517 1090 100 Plus
2L 23513712 2L 20856140..20856356 83..299 1085 100 Plus
2L 23513712 2L 20852748..20852818 16..86 355 100 Plus
Blast to na_te.dros performed 2014-11-27 14:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 203..273 462..532 111 68.9 Plus

BS06319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:16 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
CG9335-RA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:42 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
CG9335-RA 165..671 10..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:47 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
twit-RA 172..670 17..515 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:16 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
CG9335-RA 165..671 10..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:48 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
twit-RA 172..670 17..515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:48 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20856418..20856633 300..515 100   Plus
2L 20852749..20852818 17..86 100 -> Plus
2L 20856144..20856356 87..299 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:47 Download gff for BS06319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20856418..20856633 300..515 100   Plus
arm_2L 20856144..20856356 87..299 100 -> Plus
arm_2L 20852749..20852818 17..86 100 -> Plus

BS06319.pep Sequence

Translation from 16 to 516

> BS06319.pep
MSAVPMKAFLAGLFLLANAWHITAINEQHQKHHLQCWHCSSDTIGAEDFC
DVTFQEDNIPTDLIKERNINLLRSCNGTINSDHERAVCRKTVEENNGKLI
TKRFCYYTNKSDPVELCNITSPEKNVRRIFCEDCLTDRCNGALAGASILE
MLLLLPIAGLIQQFAI*

BS06319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
twit-PA 166 CG9335-PA 1..166 1..166 891 100 Plus
CG31676-PB 159 CG31676-PB 27..146 34..157 184 33.1 Plus
CG31676-PA 159 CG31676-PA 27..146 34..157 184 33.1 Plus