Clone Sequence Records
BS06319.3prime Sequence
531 bp (530 high quality bases) assembled on 2005-12-03
> BS06319.3prime
ATGGTCTAGAAAGCTTTTAGATGGCAAACTGTTGGATGAGGCCCGCGATG
GGCAGGAGCAGCAGCATCTCCAAAATGGATGCACCTGCTAAGGCTCCGTT
GCAGCGATCGGTGAGGCAGTCCTCGCAGAATATCCGCCGCACGTTCTTCT
CCGGACTGGTGATGTTGCACAGCTCCACGGGATCTGATTTGTTGGTGTAG
TAGCAGAATCGCTTGGTGATCAGCTTGCCATTATTTTCCTCCACGGTCTT
GCGGCAAACGGCCCTCTCGTGATCGGAGTTAATGGTGCCGTTGCAGCTCC
TTAGCAGATTTATATTCCGCTCCTTGATCAGGTCAGTGGGAATGTTGTCC
TCCTGGAAGGTCACGTCGCAGAAGTCCTCCGCCCCAATTGTGTCCGAGCT
ACAGTGCCAGCACTGCAGGTGATGCTTCTGGTGCTGCTCATTTATGGCTG
TGATGTGCCAGGCATTGGCCAGCAAGAAGAGACCAGCCAGAAAGGCTTTC
ATCGGCACCGCTGACATGTCGACTGATAACT
BS06319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9335-PA | 501 | CG9335-RA | 1..501 | 517..17 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 1150 | CG9335-RA | 171..672 | 518..17 | 2510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20856418..20856635 | 234..17 | 1090 | 100 | Minus |
2L | 23513712 | 2L | 20856140..20856356 | 451..235 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 20852748..20852818 | 518..448 | 355 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 21:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 203..273 | 72..2 | 111 | 68.9 | Minus |
BS06319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:24 Download gff for
BS06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 17..517 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:16 Download gff for
BS06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 17..517 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:38 Download gff for
BS06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 13..524 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:46 Download gff for
BS06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 13..524 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:46 Download gff for
BS06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20852745..20852818 | 448..524 | 96 | -> | Minus |
2L | 20856144..20856356 | 235..447 | 100 | -> | Minus |
2L | 20856418..20856637 | 13..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:38 Download gff for
BS06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20852745..20852818 | 448..524 | 96 | -> | Minus |
arm_2L | 20856144..20856356 | 235..447 | 100 | -> | Minus |
arm_2L | 20856418..20856637 | 13..234 | 99 | | Minus |
BS06319.5prime Sequence
531 bp (530 high quality bases) assembled on 2005-12-03
> BS06319.5prime
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCTAAAAGCTTTCTAGACC
BS06319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9335-PA | 501 | CG9335-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 1150 | CG9335-RA | 171..672 | 16..517 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20856418..20856635 | 300..517 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 20856140..20856356 | 83..299 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 20852748..20852818 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 203..272 | 462..531 | 106 | 68.5 | Plus |
BS06319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:25 Download gff for
BS06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:17 Download gff for
BS06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:52:55 Download gff for
BS06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 10..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:08 Download gff for
BS06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 10..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:08 Download gff for
BS06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20852745..20852818 | 10..86 | 96 | -> | Plus |
2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
2L | 20856418..20856637 | 300..521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:52:55 Download gff for
BS06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20852745..20852818 | 10..86 | 96 | -> | Plus |
arm_2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
arm_2L | 20856418..20856637 | 300..521 | 99 | | Plus |
BS06319.complete Sequence
533 bp (533 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635444
> BS06319.complete
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCTAAAAGCTTTCTAGACCAT
BS06319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 501 | CG9335-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 1150 | CG9335-RA | 171..672 | 16..517 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20856418..20856635 | 300..517 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 20856140..20856356 | 83..299 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 20852748..20852818 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 203..273 | 462..532 | 111 | 68.9 | Plus |
BS06319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:16 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-RA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:42 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-RA | 165..671 | 10..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:47 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 172..670 | 17..515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:16 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-RA | 165..671 | 10..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:48 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 172..670 | 17..515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:48 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20856418..20856633 | 300..515 | 100 | | Plus |
2L | 20852749..20852818 | 17..86 | 100 | -> | Plus |
2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:47 Download gff for
BS06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20856418..20856633 | 300..515 | 100 | | Plus |
arm_2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
arm_2L | 20852749..20852818 | 17..86 | 100 | -> | Plus |
BS06319.pep Sequence
Translation from 16 to 516
> BS06319.pep
MSAVPMKAFLAGLFLLANAWHITAINEQHQKHHLQCWHCSSDTIGAEDFC
DVTFQEDNIPTDLIKERNINLLRSCNGTINSDHERAVCRKTVEENNGKLI
TKRFCYYTNKSDPVELCNITSPEKNVRRIFCEDCLTDRCNGALAGASILE
MLLLLPIAGLIQQFAI*
BS06319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-PA | 166 | CG9335-PA | 1..166 | 1..166 | 891 | 100 | Plus |
CG31676-PB | 159 | CG31676-PB | 27..146 | 34..157 | 184 | 33.1 | Plus |
CG31676-PA | 159 | CG31676-PA | 27..146 | 34..157 | 184 | 33.1 | Plus |