Clone BS06320 Report

Search the DGRC for BS06320

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG6523-RA
Protein status:BS06320.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06320.3prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-03

> BS06320.3prime
ATGGTCTAGAAAGCTTTTAGCCCTTTAGCGTGGACTCGAGCTCATTGTTC
GCCAGCAGTTCCTTAATAATATCGAGTCCGCCGATAAGTTCACCCTTGAC
GTAAACCTGGGGATATGTGGGCCAGTCGGAGTAGGTTTTCAGGCCTTGAC
GCACTTCTTCGTCGCCGAGGATGTCAAATGTCTCGTACGGCAAGTTGGTT
TCGTTCACAATGCCGATGAGCTGCTTGGAGAATCCGCAACGCGGTCCATT
TCGGTCGCCCTTCATGAATATCATCAGCGGAGCTGTATTGATTAGGGCCT
TTAGGCGTTCCTCCAACGTTTGTCCTGTTGCCGCCGCGCTGCTTGCGTTT
TCGGCCAACTTTTTGGATTTGGCGCTTATGGCGGCGATGTCTACACCATC
GACACGGTCAACGGCGGAGCCCTTGGCGAAGAATATGACTGTGGGCACGG
CCTCGATCTGATGTTTCATGGAAATCTCGGGAAATTGTTCAGCGTTTAGG
CTGATGAACTGCAGTTTTTCGCCAGTAATCTTGGCCAGCTCCTCCAGCGC
GTCTTTCACCTGACCGCATTGCTCTGCCCATTCGGCGGCGAATAGAGCTA
CGGTCGTCTTATCCGCATTAATGTACTTCTGGTACTCCTCGGCAGCCGAC
ACGTTCACCACGGGCATGTCGACTGATAACT

BS06320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-PA 651 CG6523-RA 1..651 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 837 CG6523-RA 84..735 668..17 3260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13366802..13367067 460..195 1330 100 Minus
2L 23513712 2L 13366530..13366740 668..458 1055 100 Minus
2L 23513712 2L 13367131..13367308 194..17 890 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:25:20 has no hits.

BS06320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:26 Download gff for BS06320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:19 Download gff for BS06320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:46 Download gff for BS06320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..735 17..668 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:35 Download gff for BS06320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..735 17..668 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:35 Download gff for BS06320.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13366530..13366740 458..668 100 -> Minus
2L 13366805..13367067 195..457 100 -> Minus
2L 13367131..13367308 17..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:46 Download gff for BS06320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13366530..13366740 458..668 100 -> Minus
arm_2L 13366805..13367067 195..457 100 -> Minus
arm_2L 13367131..13367308 17..194 100   Minus

BS06320.5prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-03

> BS06320.5prime
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCTAAAAGCTTTCTAGACC

BS06320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-PA 651 CG6523-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 837 CG6523-RA 84..735 16..667 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13366802..13367067 224..489 1330 100 Plus
2L 23513712 2L 13366530..13366740 16..226 1055 100 Plus
2L 23513712 2L 13367131..13367308 490..667 890 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:38:36 has no hits.

BS06320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:27 Download gff for BS06320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:20 Download gff for BS06320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:05 Download gff for BS06320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..735 16..667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:01 Download gff for BS06320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..735 16..667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:01 Download gff for BS06320.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13366530..13366740 16..226 100 -> Plus
2L 13366805..13367067 227..489 100 -> Plus
2L 13367131..13367308 490..667 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:05 Download gff for BS06320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13366530..13366740 16..226 100 -> Plus
arm_2L 13366805..13367067 227..489 100 -> Plus
arm_2L 13367131..13367308 490..667 100   Plus

BS06320.complete Sequence

683 bp (683 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635445

> BS06320.complete
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCTAAAAGCTTTCTAGACCAT

BS06320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 651 CG6523-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 837 CG6523-RA 84..735 16..667 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13366802..13367067 224..489 1330 100 Plus
2L 23513712 2L 13366530..13366740 16..226 1055 100 Plus
2L 23513712 2L 13367131..13367308 490..667 890 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:21:23 has no hits.

BS06320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:17 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:44 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 65..716 16..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:49 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 85..733 17..665 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:17 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 65..716 16..667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:39 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 85..733 17..665 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:39 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13366531..13366740 17..226 100 -> Plus
2L 13366805..13367067 227..489 100 -> Plus
2L 13367131..13367306 490..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:49 Download gff for BS06320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13366531..13366740 17..226 100 -> Plus
arm_2L 13366805..13367067 227..489 100 -> Plus
arm_2L 13367131..13367306 490..665 100   Plus

BS06320.pep Sequence

Translation from 16 to 666

> BS06320.pep
MPVVNVSAAEEYQKYINADKTTVALFAAEWAEQCGQVKDALEELAKITGE
KLQFISLNAEQFPEISMKHQIEAVPTVIFFAKGSAVDRVDGVDIAAISAK
SKKLAENASSAAATGQTLEERLKALINTAPLMIFMKGDRNGPRCGFSKQL
IGIVNETNLPYETFDILGDEEVRQGLKTYSDWPTYPQVYVKGELIGGLDI
IKELLANNELESTLKG*

BS06320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-PA 216 CG6523-PA 1..216 1..216 1089 100 Plus
CG14407-PA 159 CG14407-PA 15..137 94..215 243 37.4 Plus