Clone Sequence Records
BS06320.3prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-03
> BS06320.3prime
ATGGTCTAGAAAGCTTTTAGCCCTTTAGCGTGGACTCGAGCTCATTGTTC
GCCAGCAGTTCCTTAATAATATCGAGTCCGCCGATAAGTTCACCCTTGAC
GTAAACCTGGGGATATGTGGGCCAGTCGGAGTAGGTTTTCAGGCCTTGAC
GCACTTCTTCGTCGCCGAGGATGTCAAATGTCTCGTACGGCAAGTTGGTT
TCGTTCACAATGCCGATGAGCTGCTTGGAGAATCCGCAACGCGGTCCATT
TCGGTCGCCCTTCATGAATATCATCAGCGGAGCTGTATTGATTAGGGCCT
TTAGGCGTTCCTCCAACGTTTGTCCTGTTGCCGCCGCGCTGCTTGCGTTT
TCGGCCAACTTTTTGGATTTGGCGCTTATGGCGGCGATGTCTACACCATC
GACACGGTCAACGGCGGAGCCCTTGGCGAAGAATATGACTGTGGGCACGG
CCTCGATCTGATGTTTCATGGAAATCTCGGGAAATTGTTCAGCGTTTAGG
CTGATGAACTGCAGTTTTTCGCCAGTAATCTTGGCCAGCTCCTCCAGCGC
GTCTTTCACCTGACCGCATTGCTCTGCCCATTCGGCGGCGAATAGAGCTA
CGGTCGTCTTATCCGCATTAATGTACTTCTGGTACTCCTCGGCAGCCGAC
ACGTTCACCACGGGCATGTCGACTGATAACT
BS06320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-PA | 651 | CG6523-RA | 1..651 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 837 | CG6523-RA | 84..735 | 668..17 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13366802..13367067 | 460..195 | 1330 | 100 | Minus |
2L | 23513712 | 2L | 13366530..13366740 | 668..458 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 13367131..13367308 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:20 has no hits.
BS06320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:26 Download gff for
BS06320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:19 Download gff for
BS06320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:46 Download gff for
BS06320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..735 | 17..668 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:35 Download gff for
BS06320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..735 | 17..668 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:35 Download gff for
BS06320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13366530..13366740 | 458..668 | 100 | -> | Minus |
2L | 13366805..13367067 | 195..457 | 100 | -> | Minus |
2L | 13367131..13367308 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:46 Download gff for
BS06320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13366530..13366740 | 458..668 | 100 | -> | Minus |
arm_2L | 13366805..13367067 | 195..457 | 100 | -> | Minus |
arm_2L | 13367131..13367308 | 17..194 | 100 | | Minus |
BS06320.5prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-03
> BS06320.5prime
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCTAAAAGCTTTCTAGACC
BS06320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-PA | 651 | CG6523-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 837 | CG6523-RA | 84..735 | 16..667 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13366802..13367067 | 224..489 | 1330 | 100 | Plus |
2L | 23513712 | 2L | 13366530..13366740 | 16..226 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 13367131..13367308 | 490..667 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:38:36 has no hits.
BS06320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:27 Download gff for
BS06320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:20 Download gff for
BS06320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:05 Download gff for
BS06320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..735 | 16..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:01 Download gff for
BS06320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..735 | 16..667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:01 Download gff for
BS06320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13366530..13366740 | 16..226 | 100 | -> | Plus |
2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
2L | 13367131..13367308 | 490..667 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:05 Download gff for
BS06320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13366530..13366740 | 16..226 | 100 | -> | Plus |
arm_2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
arm_2L | 13367131..13367308 | 490..667 | 100 | | Plus |
BS06320.complete Sequence
683 bp (683 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635445
> BS06320.complete
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCTAAAAGCTTTCTAGACCAT
BS06320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 651 | CG6523-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 837 | CG6523-RA | 84..735 | 16..667 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13366802..13367067 | 224..489 | 1330 | 100 | Plus |
2L | 23513712 | 2L | 13366530..13366740 | 16..226 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 13367131..13367308 | 490..667 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:21:23 has no hits.
BS06320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:17 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:44 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 65..716 | 16..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:49 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 85..733 | 17..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:17 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 65..716 | 16..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:39 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 85..733 | 17..665 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:39 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13366531..13366740 | 17..226 | 100 | -> | Plus |
2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
2L | 13367131..13367306 | 490..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:49 Download gff for
BS06320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13366531..13366740 | 17..226 | 100 | -> | Plus |
arm_2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
arm_2L | 13367131..13367306 | 490..665 | 100 | | Plus |
BS06320.pep Sequence
Translation from 16 to 666
> BS06320.pep
MPVVNVSAAEEYQKYINADKTTVALFAAEWAEQCGQVKDALEELAKITGE
KLQFISLNAEQFPEISMKHQIEAVPTVIFFAKGSAVDRVDGVDIAAISAK
SKKLAENASSAAATGQTLEERLKALINTAPLMIFMKGDRNGPRCGFSKQL
IGIVNETNLPYETFDILGDEEVRQGLKTYSDWPTYPQVYVKGELIGGLDI
IKELLANNELESTLKG*
BS06320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-PA | 216 | CG6523-PA | 1..216 | 1..216 | 1089 | 100 | Plus |
CG14407-PA | 159 | CG14407-PA | 15..137 | 94..215 | 243 | 37.4 | Plus |