Clone BS06321 Report

Search the DGRC for BS06321

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRfC4-RA
Protein status:BS06321.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06321.3prime Sequence

937 bp (866 high quality bases) assembled on 2005-12-03

> BS06321.3prime
ATGGTCTAGAAAGCTTCTAATGCTTCTCGGCGGCAATGCAGAGTTTGGCC
AGAAGGGCGGTGAGCTGCAGCAGCGAGTTGATACCATCGATAATCTTCAT
GTGGGTGATTCCGATCTCACGGATAAAGTCCAGCTTCAAATGCTCATCGA
TGTTGATGCGCTTGCAGACACGGAATATGTTCGCAATGATGTCCTCCGGC
GAGTATCCCAGCTTCCACAGCTTGGCCAGGATTTTGTAGGCCTTGTGTAT
GTCGTTAGCAGCGCAATGGTGGATCATCTCCTCTAGGAGCTTTGGGTGCG
GCTCGTCGCAGACCTTAAAGACGTTCTCAGCGGTGATGTCGCCAAATCCC
TGAGCGGTGGACTGCAGGTTGTTCAGTCCCTGTCGCATATCACCTTGGGC
AGTGAATACGATGGCCTCAAGTCCGTCCTCCGTGTAGTTAAGCTTCTCCC
ACTTGGCCACCTCGATGAGCTTGGCCAGAACTTGCGCATCGGACAGCTTG
GTGAATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATCTTCTC
GCTGGTGTTGCAGGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCA
TGGTCCGGCGCAGTGCCTGCTGGGCACCCTCCGTCATGCTGTCCGCCTCG
TCCAGAATCACAATCTTGTGCCTGCCCCGCGGCAGTGTCACCTTCTGCTG
AGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCGTTCATTGG
AGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGGAGAATC
CTGGCCAGACACTGGATGGTGGTTGTCTTGCCCACGCCAGGAGGACCAGC
AATAATAATATTGGGTGCATTTCCCTGGGTGGCGAATACGGATAGTCTTG
CTACGGTATCCTCATTGCCCACTATCTCCTTGAACTT

BS06321.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14999-PA 996 RfC40-RA 76..996 937..17 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-RA 1127 CG14999-RA 131..1052 937..16 4610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4134935..4135766 16..847 4160 100 Plus
3L 28110227 3L 4135818..4135908 847..937 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:49:11 has no hits.

BS06321.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:28 Download gff for BS06321.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC40-PA 76..996 17..937 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:22 Download gff for BS06321.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14999-PA 76..996 17..937 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:24 Download gff for BS06321.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 131..1055 10..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:33 Download gff for BS06321.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 131..1055 10..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:33 Download gff for BS06321.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4134932..4135766 10..847 99 <- Plus
3L 4135819..4135908 848..937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:24 Download gff for BS06321.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4134932..4135766 10..847 99 <- Plus
arm_3L 4135819..4135908 848..937 100   Plus

BS06321.5prime Sequence

903 bp (783 high quality bases) assembled on 2005-12-03

> BS06321.5prime
GAAGTTATCAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACA
AGCGCAGTCACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAG
GAGATAGTGGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCAC
CCAGGGAAATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCA
AGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTAC
AAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT
GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGC
GGGGCAGGCACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAG
GGTGCCCAGCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCAC
TCGTTTTGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCC
AGTCCCGCTGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTT
CTGGCCAAGCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGA
GGACGGACTTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGG
GACTGAACAACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCT
GAGAACGTCTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGA
GATGATCCACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCC
TGGCCAAGCTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAAC
ATATTCCGTGTCTGCNAGCGCATCAACATCGATGAGCATTTGAAGCTGGA
CTT

BS06321.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14999-PA 996 RfC40-RA 1..887 17..903 4416 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-RA 1127 CG14999-RA 56..942 17..903 4424 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4135045..4135766 903..182 3599 99.9 Minus
3L 28110227 3L 4135818..4135983 182..17 830 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:34:24 has no hits.

BS06321.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:30 Download gff for BS06321.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC40-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:23 Download gff for BS06321.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14999-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:41 Download gff for BS06321.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 50..942 9..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:24 Download gff for BS06321.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 50..942 9..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:24 Download gff for BS06321.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4135045..4135766 182..903 99 <- Minus
3L 4135819..4135989 9..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:41 Download gff for BS06321.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4135045..4135766 182..903 99 <- Minus
arm_3L 4135819..4135989 9..181 97   Minus

BS06321.complete Sequence

1028 bp (1028 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635446

> BS06321.complete
GAAGTTATCAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACA
AGCGCAGTCACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAG
GAGATAGTGGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCAC
CCAGGGAAATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCA
AGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTAC
AAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT
GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGC
GGGGCAGGCACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAG
GGTGCCCAGCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCAC
TCGTTTTGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCC
AGTCCCGCTGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTT
CTGGCCAAGCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGA
GGACGGACTTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGG
GACTGAACAACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCT
GAGAACGTCTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGA
GATGATCCACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCC
TGGCCAAGCTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAAC
ATATTCCGTGTCTGCAAGCGCATCAACATCGATGAGCATTTGAAGCTGGA
CTTTATCCGTGAGATCGGAATCACCCACATGAAGATTATCGATGGTATCA
ACTCGCTGCTGCAGCTCACCGCCCTTCTGGCCAAACTCTGCATTGCCGCC
GAGAAGCATTAGAAGCTTTCTAGACCAT

BS06321.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-RA 996 CG14999-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-RA 1127 CG14999-RA 56..1052 17..1013 4985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4134935..4135766 1013..182 4160 100 Minus
3L 28110227 3L 4135818..4135983 182..17 830 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:46:52 has no hits.

BS06321.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:18 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:45 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 51..1056 9..1019 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:35 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 56..1051 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:18 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 51..1056 9..1019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:48 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 56..1051 17..1012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:48 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4134936..4135766 182..1012 100 <- Minus
3L 4135819..4135983 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:35 Download gff for BS06321.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4134936..4135766 182..1012 100 <- Minus
arm_3L 4135819..4135983 17..181 100   Minus

BS06321.pep Sequence

Translation from 16 to 1011

> BS06321.pep
MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAP
NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKI
KMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA
CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEA
IVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHC
AANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREI
GITHMKIIDGINSLLQLTALLAKLCIAAEKH*

BS06321.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-PA 331 CG14999-PA 1..331 1..331 1698 100 Plus
RfC3-PA 332 CG5313-PA 11..326 16..329 486 34.4 Plus
CG8142-PA 353 CG8142-PA 31..344 17..320 467 35.4 Plus
RfC38-PB 356 CG6258-PB 4..242 18..228 235 27.6 Plus
RfC38-PA 356 CG6258-PA 4..242 18..228 235 27.6 Plus