Clone Sequence Records
BS06321.3prime Sequence
937 bp (866 high quality bases) assembled on 2005-12-03
> BS06321.3prime
ATGGTCTAGAAAGCTTCTAATGCTTCTCGGCGGCAATGCAGAGTTTGGCC
AGAAGGGCGGTGAGCTGCAGCAGCGAGTTGATACCATCGATAATCTTCAT
GTGGGTGATTCCGATCTCACGGATAAAGTCCAGCTTCAAATGCTCATCGA
TGTTGATGCGCTTGCAGACACGGAATATGTTCGCAATGATGTCCTCCGGC
GAGTATCCCAGCTTCCACAGCTTGGCCAGGATTTTGTAGGCCTTGTGTAT
GTCGTTAGCAGCGCAATGGTGGATCATCTCCTCTAGGAGCTTTGGGTGCG
GCTCGTCGCAGACCTTAAAGACGTTCTCAGCGGTGATGTCGCCAAATCCC
TGAGCGGTGGACTGCAGGTTGTTCAGTCCCTGTCGCATATCACCTTGGGC
AGTGAATACGATGGCCTCAAGTCCGTCCTCCGTGTAGTTAAGCTTCTCCC
ACTTGGCCACCTCGATGAGCTTGGCCAGAACTTGCGCATCGGACAGCTTG
GTGAATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATCTTCTC
GCTGGTGTTGCAGGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCA
TGGTCCGGCGCAGTGCCTGCTGGGCACCCTCCGTCATGCTGTCCGCCTCG
TCCAGAATCACAATCTTGTGCCTGCCCCGCGGCAGTGTCACCTTCTGCTG
AGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCGTTCATTGG
AGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGGAGAATC
CTGGCCAGACACTGGATGGTGGTTGTCTTGCCCACGCCAGGAGGACCAGC
AATAATAATATTGGGTGCATTTCCCTGGGTGGCGAATACGGATAGTCTTG
CTACGGTATCCTCATTGCCCACTATCTCCTTGAACTT
BS06321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14999-PA | 996 | RfC40-RA | 76..996 | 937..17 | 4605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC4-RA | 1127 | CG14999-RA | 131..1052 | 937..16 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4134935..4135766 | 16..847 | 4160 | 100 | Plus |
3L | 28110227 | 3L | 4135818..4135908 | 847..937 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:49:11 has no hits.
BS06321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:28 Download gff for
BS06321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC40-PA | 76..996 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:22 Download gff for
BS06321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14999-PA | 76..996 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:24 Download gff for
BS06321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC4-RA | 131..1055 | 10..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:33 Download gff for
BS06321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC4-RA | 131..1055 | 10..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:33 Download gff for
BS06321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4134932..4135766 | 10..847 | 99 | <- | Plus |
3L | 4135819..4135908 | 848..937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:24 Download gff for
BS06321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4134932..4135766 | 10..847 | 99 | <- | Plus |
arm_3L | 4135819..4135908 | 848..937 | 100 | | Plus |
BS06321.5prime Sequence
903 bp (783 high quality bases) assembled on 2005-12-03
> BS06321.5prime
GAAGTTATCAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACA
AGCGCAGTCACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAG
GAGATAGTGGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCAC
CCAGGGAAATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCA
AGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTAC
AAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT
GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGC
GGGGCAGGCACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAG
GGTGCCCAGCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCAC
TCGTTTTGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCC
AGTCCCGCTGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTT
CTGGCCAAGCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGA
GGACGGACTTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGG
GACTGAACAACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCT
GAGAACGTCTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGA
GATGATCCACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCC
TGGCCAAGCTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAAC
ATATTCCGTGTCTGCNAGCGCATCAACATCGATGAGCATTTGAAGCTGGA
CTT
BS06321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14999-PA | 996 | RfC40-RA | 1..887 | 17..903 | 4416 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC4-RA | 1127 | CG14999-RA | 56..942 | 17..903 | 4424 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4135045..4135766 | 903..182 | 3599 | 99.9 | Minus |
3L | 28110227 | 3L | 4135818..4135983 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:34:24 has no hits.
BS06321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:30 Download gff for
BS06321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC40-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:23 Download gff for
BS06321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14999-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:41 Download gff for
BS06321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC4-RA | 50..942 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:24 Download gff for
BS06321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC4-RA | 50..942 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:24 Download gff for
BS06321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4135045..4135766 | 182..903 | 99 | <- | Minus |
3L | 4135819..4135989 | 9..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:41 Download gff for
BS06321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4135045..4135766 | 182..903 | 99 | <- | Minus |
arm_3L | 4135819..4135989 | 9..181 | 97 | | Minus |
BS06321.complete Sequence
1028 bp (1028 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635446
> BS06321.complete
GAAGTTATCAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACA
AGCGCAGTCACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAG
GAGATAGTGGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCAC
CCAGGGAAATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCA
AGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTAC
AAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT
GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGC
GGGGCAGGCACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAG
GGTGCCCAGCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCAC
TCGTTTTGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCC
AGTCCCGCTGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTT
CTGGCCAAGCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGA
GGACGGACTTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGG
GACTGAACAACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCT
GAGAACGTCTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGA
GATGATCCACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCC
TGGCCAAGCTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAAC
ATATTCCGTGTCTGCAAGCGCATCAACATCGATGAGCATTTGAAGCTGGA
CTTTATCCGTGAGATCGGAATCACCCACATGAAGATTATCGATGGTATCA
ACTCGCTGCTGCAGCTCACCGCCCTTCTGGCCAAACTCTGCATTGCCGCC
GAGAAGCATTAGAAGCTTTCTAGACCAT
BS06321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC4-RA | 996 | CG14999-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC4-RA | 1127 | CG14999-RA | 56..1052 | 17..1013 | 4985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4134935..4135766 | 1013..182 | 4160 | 100 | Minus |
3L | 28110227 | 3L | 4135818..4135983 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:46:52 has no hits.
BS06321.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:18 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC40-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:45 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC40-RA | 51..1056 | 9..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:35 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC4-RA | 56..1051 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:18 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC40-RA | 51..1056 | 9..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:48 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC4-RA | 56..1051 | 17..1012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:48 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4134936..4135766 | 182..1012 | 100 | <- | Minus |
3L | 4135819..4135983 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:35 Download gff for
BS06321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4134936..4135766 | 182..1012 | 100 | <- | Minus |
arm_3L | 4135819..4135983 | 17..181 | 100 | | Minus |
BS06321.pep Sequence
Translation from 16 to 1011
> BS06321.pep
MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAP
NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKI
KMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA
CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEA
IVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHC
AANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREI
GITHMKIIDGINSLLQLTALLAKLCIAAEKH*
BS06321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC4-PA | 331 | CG14999-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
RfC3-PA | 332 | CG5313-PA | 11..326 | 16..329 | 486 | 34.4 | Plus |
CG8142-PA | 353 | CG8142-PA | 31..344 | 17..320 | 467 | 35.4 | Plus |
RfC38-PB | 356 | CG6258-PB | 4..242 | 18..228 | 235 | 27.6 | Plus |
RfC38-PA | 356 | CG6258-PA | 4..242 | 18..228 | 235 | 27.6 | Plus |