Clone BS06328 Report

Search the DGRC for BS06328

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptSpase25-RA
Protein status:BS06328.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06328.3prime Sequence

630 bp (629 high quality bases) assembled on 2005-12-03

> BS06328.3prime
ATGGTCTAGAAAGCTTTTAATTAGAAGAAAGGCTGCTAGCGTTCTTCTTG
TCGGCAGCTAAGGCGTTGAACAGACGGTTGACCTCGTTGGCCACCAGGTT
GTCCAGGACGATGCCATTCTGATCGATGAAGGCGGCGCACGACTTGTTGC
TGCTCTGCTCGCGCCGCTTGCCATTTTTCGTGTCGCGAACACTGAGGGTC
AGCAGGTACTTGTCGTCGTACTTGCGCATATCGGAGCTGGCCTCCCACAG
GCGCTCCCGCTCCTTGTCCTTCTGCAGGGCCACCGCAAAGGTGCCCTTCT
CGCGGAAACTGGAGTGCAGGGTCAGAATGCCGAGGAGTGCAAAGTAGGCC
AAAACACTGAAGAGGAGCACTGGACGGGATTCCGGGAAGGGGTGGGTGAA
GTCCCAAGCATGGGCCATTATAGCCACGGAAACGGCGAGGGCGCAGAGGG
CCAAACGGGTGTTGACCAGGCCGAATTGCTCCTTCAGCTGGGGACGATCG
CCAAGGAGGCAGGTTTTCACTGCATCATCGAGGGCGTGCTTCACTGCGGA
TCCATCCCACTTGTTGACCTTCACCAGCTCCTCGCCTTGCTGTGACTTTT
CATCCTTCTTGCCCATGTCGACTGATAACT

BS06328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1751-PA 600 CG1751-RA 1..600 616..17 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 1188 CG1751-RC 144..744 616..16 3005 100 Minus
Spase25-RB 860 CG1751-RB 144..744 616..16 3005 100 Minus
Spase25-RA 821 CG1751-RA 144..744 616..16 3005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11485559..11486122 579..16 2820 100 Minus
X 23542271 X 11485393..11485431 616..578 195 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:37:00 has no hits.

BS06328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:41 Download gff for BS06328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:38 Download gff for BS06328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:53 Download gff for BS06328.3prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..744 16..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:49 Download gff for BS06328.3prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..744 16..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:49 Download gff for BS06328.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11485383..11485431 578..624 91 -> Minus
X 11485561..11486122 16..577 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:53 Download gff for BS06328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11379416..11379464 578..624 91 -> Minus
arm_X 11379594..11380155 16..577 100   Minus

BS06328.5prime Sequence

630 bp (629 high quality bases) assembled on 2005-12-03

> BS06328.5prime
GAAGTTATCAGTCGACATGGGCAAGAAGGATGAAAAGTCACAGCAAGGCG
AGGAGCTGGTGAAGGTCAACAAGTGGGATGGATCCGCAGTGAAGCACGCC
CTCGATGATGCAGTGAAAACCTGCCTCCTTGGCGATCGTCCCCAGCTGAA
GGAGCAATTCGGCCTGGTCAACACCCGTTTGGCCCTCTGCGCCCTCGCCG
TTTCCGTGGCTATAATGGCCCATGCTTGGGACTTCACCCACCCCTTCCCG
GAATCCCGTCCAGTGCTCCTCTTCAGTGTTTTGGCCTACTTTGCACTCCT
CGGCATTCTGACCCTGCACTCCAGTTTCCGCGAGAAGGGCACCTTTGCGG
TGGCCCTGCAGAAGGACAAGGAGCGGGAGCGCCTGTGGGAGGCCAGCTCC
GATATGCGCAAGTACGACGACAAGTACCTGCTGACCCTCAGTGTTCGCGA
CACGAAAAATGGCAAGCGGCGCGAGCAGAGCAGCAACAAGTCGTGCGCCG
CCTTCATCGATCAGAATGGCATCGTCCTGGACAACCTGGTGGCCAACGAG
GTCAACCGTCTGTTCAACGCCTTAGCTGCCGACAAGAAGAACGCTAGCAG
CCTTTCTTCTAATTAAAAGCTTTCTAGACC

BS06328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1751-PA 600 CG1751-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 1188 CG1751-RC 144..744 17..617 3005 100 Plus
Spase25-RB 860 CG1751-RB 144..744 17..617 3005 100 Plus
Spase25-RA 821 CG1751-RA 144..744 17..617 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11485559..11486122 54..617 2820 100 Plus
X 23542271 X 11485393..11485431 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:52:17 has no hits.

BS06328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:42 Download gff for BS06328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:40 Download gff for BS06328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:05 Download gff for BS06328.5prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..744 9..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:58 Download gff for BS06328.5prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..744 9..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:58 Download gff for BS06328.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11485383..11485431 9..55 91 -> Plus
X 11485561..11486122 56..617 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:05 Download gff for BS06328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11379416..11379464 9..55 91 -> Plus
arm_X 11379594..11380155 56..617 100   Plus

BS06328.complete Sequence

632 bp (632 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635448

> BS06328.complete
GAAGTTATCAGTCGACATGGGCAAGAAGGATGAAAAGTCACAGCAAGGCG
AGGAGCTGGTGAAGGTCAACAAGTGGGATGGATCCGCAGTGAAGCACGCC
CTCGATGATGCAGTGAAAACCTGCCTCCTTGGCGATCGTCCCCAGCTGAA
GGAGCAATTCGGCCTGGTCAACACCCGTTTGGCCCTCTGCGCCCTCGCCG
TTTCCGTGGCTATAATGGCCCATGCTTGGGACTTCACCCACCCCTTCCCG
GAATCCCGTCCAGTGCTCCTCTTCAGTGTTTTGGCCTACTTTGCACTCCT
CGGCATTCTGACCCTGCACTCCAGTTTCCGCGAGAAGGGCACCTTTGCGG
TGGCCCTGCAGAAGGACAAGGAGCGGGAGCGCCTGTGGGAGGCCAGCTCC
GATATGCGCAAGTACGACGACAAGTACCTGCTGACCCTCAGTGTTCGCGA
CACGAAAAATGGCAAGCGGCGCGAGCAGAGCAGCAACAAGTCGTGCGCCG
CCTTCATCGATCAGAATGGCATCGTCCTGGACAACCTGGTGGCCAACGAG
GTCAACCGTCTGTTCAACGCCTTAGCTGCCGACAAGAAGAACGCTAGCAG
CCTTTCTTCTAATTAAAAGCTTTCTAGACCAT

BS06328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 600 CG1751-PC 1..600 17..616 3000 100 Plus
Spase25-RB 600 CG1751-PB 1..600 17..616 3000 100 Plus
Spase25-RA 600 CG1751-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 1188 CG1751-RC 144..744 17..617 3005 100 Plus
Spase25-RB 860 CG1751-RB 144..744 17..617 3005 100 Plus
Spase25-RA 821 CG1751-RA 144..744 17..617 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11485559..11486122 54..617 2820 100 Plus
X 23542271 X 11485393..11485431 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:46:26 has no hits.

BS06328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:28 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:27 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 132..742 9..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:52 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 144..741 17..614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:28 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 132..742 9..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:56 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 144..741 17..614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:56 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
X 11485393..11485431 17..55 100 -> Plus
X 11485561..11486119 56..614 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:52 Download gff for BS06328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11379426..11379464 17..55 100 -> Plus
arm_X 11379594..11380152 56..614 100   Plus

BS06328.pep Sequence

Translation from 16 to 615

> BS06328.pep
MGKKDEKSQQGEELVKVNKWDGSAVKHALDDAVKTCLLGDRPQLKEQFGL
VNTRLALCALAVSVAIMAHAWDFTHPFPESRPVLLFSVLAYFALLGILTL
HSSFREKGTFAVALQKDKERERLWEASSDMRKYDDKYLLTLSVRDTKNGK
RREQSSNKSCAAFIDQNGIVLDNLVANEVNRLFNALAADKKNASSLSSN*

BS06328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-PC 199 CG1751-PC 1..199 1..199 1012 100 Plus
Spase25-PB 199 CG1751-PB 1..199 1..199 1012 100 Plus
Spase25-PA 199 CG1751-PA 1..199 1..199 1012 100 Plus