Clone BS06339 Report

Search the DGRC for BS06339

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptRcp-RA
Protein status:BS06339.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06339.3prime Sequence

699 bp (698 high quality bases) assembled on 2005-12-03

> BS06339.3prime
ATGGTCTAGAAAGCTTCTACCCGAGGTTTTCTCCATCTGGTGTCGGATTG
GACTTGGTTTCCATTGAAGTGGGTGCATCCGTTGCAGGCGCTGTAGTGGC
TTCATTTGCTGGAGTAGCATTATTTTCTGAAGACGATGTTTCCACTGGGC
TTGCTTCTTCTGCTGGAGTAGTAGTAGTGGCTTCACTTGAAGGAGTAGCG
ACATTCGCAGGAGTAACTCCATCACCTGGCGTGGTTTTGTCCGCTGGAGC
TATTTGTTCCGCTGGATTGGATTTTGCCTGGGCATTACGCTTTACGCCAG
ATTGCTTGCCGGCCTTCGCAGTGGACTCCGCAGGCTTTTCCGCCGGTGTT
TCCTTAGCAGCGCCTTTGGTTTCTCCACCATGGAAGTGTTTGTAGCTCAG
CTGAATGATTTTCTCGTTCTCCTCATCGGTTAGTGGAGCTTTATTGTCGT
CGATGAGCAGTTGCGTGTGTAGTGCACTTGTAGGCGGATCGTTGATCATT
TGCAGGATCTCTTGGGACTTTAGACGATAAGAAGACAGGTCTTTAACGTA
ATTCATAATGTTCTCACGAGTTTGTGTCTTGCAGGGCGACTCCTCCAGAT
ACTGCAGTGCCTCATAGGTAACCGTGGCCAAGTTGCGCATGCCGAACTTC
TTTTTGGTGCTTTTGATCTTCTGTAGAATCTGCATGTCGACTGATAACT

BS06339.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4875-PA 669 CG4875-RA 1..669 685..17 3345 100 Minus
CG4875-PB 717 CG4875-RB 49..717 685..17 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 1138 CG4875-RC 69..741 685..13 3350 99.9 Minus
Rcp-RB 1080 CG4875-RB 69..741 685..13 3350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885520 458..13 2215 99.8 Minus
X 23542271 X 16884862..16885016 612..458 775 100 Minus
X 23542271 X 16884726..16884801 685..610 380 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:33:51 has no hits.

BS06339.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:55 Download gff for BS06339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 46..717 17..691 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:59 Download gff for BS06339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 46..717 17..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:51 Download gff for BS06339.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 66..741 13..691 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:13 Download gff for BS06339.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 66..741 13..691 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:13 Download gff for BS06339.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16884864..16885016 458..610 100 -> Minus
X 16884723..16884800 611..691 96 -> Minus
X 16885076..16885520 13..457 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:51 Download gff for BS06339.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778756..16778833 611..691 96 -> Minus
arm_X 16778897..16779049 458..610 100 -> Minus
arm_X 16779109..16779553 13..457 99   Minus

BS06339.5prime Sequence

699 bp (698 high quality bases) assembled on 2005-12-03

> BS06339.5prime
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGTAGAAGCTTTCTAGACC

BS06339.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4875-PA 669 CG4875-RA 1..669 17..685 3345 100 Plus
CG4875-PB 717 CG4875-RB 49..717 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 1138 CG4875-RC 69..741 17..689 3350 99.9 Plus
Rcp-RB 1080 CG4875-RB 69..741 17..689 3350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885520 244..689 2215 99.8 Plus
X 23542271 X 16884862..16885016 90..244 775 100 Plus
X 23542271 X 16884726..16884801 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:39:53 has no hits.

BS06339.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:56 Download gff for BS06339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 46..717 11..685 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:01 Download gff for BS06339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 46..717 11..685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:22 Download gff for BS06339.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 66..741 11..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:21 Download gff for BS06339.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 66..741 11..689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:21 Download gff for BS06339.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16884723..16884800 11..91 96 -> Plus
X 16884864..16885016 92..244 100 -> Plus
X 16885076..16885520 245..689 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:22 Download gff for BS06339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778756..16778833 11..91 96 -> Plus
arm_X 16778897..16779049 92..244 100 -> Plus
arm_X 16779109..16779553 245..689 99   Plus

BS06339.complete Sequence

701 bp (701 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635449

> BS06339.complete
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGTAGAAGCTTTCTAGACCA
T

BS06339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 717 CG4875-PC 49..717 17..685 3345 100 Plus
Rcp-RB 717 CG4875-PB 49..717 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 1138 CG4875-RC 69..741 17..689 3350 99.9 Plus
Rcp-RB 1080 CG4875-RB 69..741 17..689 3350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885520 244..689 2215 99.8 Plus
X 23542271 X 16884862..16885016 90..244 775 100 Plus
X 23542271 X 16884726..16884801 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:21:46 has no hits.

BS06339.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:18 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 46..717 11..685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:58 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 64..739 11..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:58 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 69..737 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:18 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 64..739 11..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:39 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 69..737 17..685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:39 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884864..16885016 92..244 100 -> Plus
X 16884726..16884800 17..91 100 -> Plus
X 16885076..16885516 245..685 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:58 Download gff for BS06339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778759..16778833 17..91 100 -> Plus
arm_X 16778897..16779049 92..244 100 -> Plus
arm_X 16779109..16779549 245..685 100   Plus

BS06339.pep Sequence

Translation from 16 to 684

> BS06339.pep
MQILQKIKSTKKKFGMRNLATVTYEALQYLEESPCKTQTRENIMNYVKDL
SSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH
FHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADK
TTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENNATPANEATTAP
ATDAPTSMETKSNPTPDGENLG*

BS06339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-PC 238 CG4875-PC 17..238 1..222 1132 100 Plus
Rcp-PB 238 CG4875-PB 17..238 1..222 1132 100 Plus