Clone Sequence Records
BS06339.3prime Sequence
699 bp (698 high quality bases) assembled on 2005-12-03
> BS06339.3prime
ATGGTCTAGAAAGCTTCTACCCGAGGTTTTCTCCATCTGGTGTCGGATTG
GACTTGGTTTCCATTGAAGTGGGTGCATCCGTTGCAGGCGCTGTAGTGGC
TTCATTTGCTGGAGTAGCATTATTTTCTGAAGACGATGTTTCCACTGGGC
TTGCTTCTTCTGCTGGAGTAGTAGTAGTGGCTTCACTTGAAGGAGTAGCG
ACATTCGCAGGAGTAACTCCATCACCTGGCGTGGTTTTGTCCGCTGGAGC
TATTTGTTCCGCTGGATTGGATTTTGCCTGGGCATTACGCTTTACGCCAG
ATTGCTTGCCGGCCTTCGCAGTGGACTCCGCAGGCTTTTCCGCCGGTGTT
TCCTTAGCAGCGCCTTTGGTTTCTCCACCATGGAAGTGTTTGTAGCTCAG
CTGAATGATTTTCTCGTTCTCCTCATCGGTTAGTGGAGCTTTATTGTCGT
CGATGAGCAGTTGCGTGTGTAGTGCACTTGTAGGCGGATCGTTGATCATT
TGCAGGATCTCTTGGGACTTTAGACGATAAGAAGACAGGTCTTTAACGTA
ATTCATAATGTTCTCACGAGTTTGTGTCTTGCAGGGCGACTCCTCCAGAT
ACTGCAGTGCCTCATAGGTAACCGTGGCCAAGTTGCGCATGCCGAACTTC
TTTTTGGTGCTTTTGATCTTCTGTAGAATCTGCATGTCGACTGATAACT
BS06339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4875-PA | 669 | CG4875-RA | 1..669 | 685..17 | 3345 | 100 | Minus |
CG4875-PB | 717 | CG4875-RB | 49..717 | 685..17 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 1138 | CG4875-RC | 69..741 | 685..13 | 3350 | 99.9 | Minus |
Rcp-RB | 1080 | CG4875-RB | 69..741 | 685..13 | 3350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885075..16885520 | 458..13 | 2215 | 99.8 | Minus |
X | 23542271 | X | 16884862..16885016 | 612..458 | 775 | 100 | Minus |
X | 23542271 | X | 16884726..16884801 | 685..610 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:33:51 has no hits.
BS06339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:55 Download gff for
BS06339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 46..717 | 17..691 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:15:59 Download gff for
BS06339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 46..717 | 17..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:51 Download gff for
BS06339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 66..741 | 13..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:13 Download gff for
BS06339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 66..741 | 13..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:13 Download gff for
BS06339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16884864..16885016 | 458..610 | 100 | -> | Minus |
X | 16884723..16884800 | 611..691 | 96 | -> | Minus |
X | 16885076..16885520 | 13..457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:51 Download gff for
BS06339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16778756..16778833 | 611..691 | 96 | -> | Minus |
arm_X | 16778897..16779049 | 458..610 | 100 | -> | Minus |
arm_X | 16779109..16779553 | 13..457 | 99 | | Minus |
BS06339.5prime Sequence
699 bp (698 high quality bases) assembled on 2005-12-03
> BS06339.5prime
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGTAGAAGCTTTCTAGACC
BS06339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4875-PA | 669 | CG4875-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG4875-PB | 717 | CG4875-RB | 49..717 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 1138 | CG4875-RC | 69..741 | 17..689 | 3350 | 99.9 | Plus |
Rcp-RB | 1080 | CG4875-RB | 69..741 | 17..689 | 3350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885075..16885520 | 244..689 | 2215 | 99.8 | Plus |
X | 23542271 | X | 16884862..16885016 | 90..244 | 775 | 100 | Plus |
X | 23542271 | X | 16884726..16884801 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:39:53 has no hits.
BS06339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:37:56 Download gff for
BS06339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 46..717 | 11..685 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:01 Download gff for
BS06339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 46..717 | 11..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:22 Download gff for
BS06339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 66..741 | 11..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:21 Download gff for
BS06339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 66..741 | 11..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:21 Download gff for
BS06339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16884723..16884800 | 11..91 | 96 | -> | Plus |
X | 16884864..16885016 | 92..244 | 100 | -> | Plus |
X | 16885076..16885520 | 245..689 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:22 Download gff for
BS06339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16778756..16778833 | 11..91 | 96 | -> | Plus |
arm_X | 16778897..16779049 | 92..244 | 100 | -> | Plus |
arm_X | 16779109..16779553 | 245..689 | 99 | | Plus |
BS06339.complete Sequence
701 bp (701 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635449
> BS06339.complete
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGTAGAAGCTTTCTAGACCA
T
BS06339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 717 | CG4875-PC | 49..717 | 17..685 | 3345 | 100 | Plus |
Rcp-RB | 717 | CG4875-PB | 49..717 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 1138 | CG4875-RC | 69..741 | 17..689 | 3350 | 99.9 | Plus |
Rcp-RB | 1080 | CG4875-RB | 69..741 | 17..689 | 3350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885075..16885520 | 244..689 | 2215 | 99.8 | Plus |
X | 23542271 | X | 16884862..16885016 | 90..244 | 775 | 100 | Plus |
X | 23542271 | X | 16884726..16884801 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:21:46 has no hits.
BS06339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:18 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-RB | 46..717 | 11..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:58 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-RB | 64..739 | 11..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:58 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 69..737 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:18 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-RB | 64..739 | 11..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:39 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 69..737 | 17..685 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:39 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16884864..16885016 | 92..244 | 100 | -> | Plus |
X | 16884726..16884800 | 17..91 | 100 | -> | Plus |
X | 16885076..16885516 | 245..685 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:58 Download gff for
BS06339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16778759..16778833 | 17..91 | 100 | -> | Plus |
arm_X | 16778897..16779049 | 92..244 | 100 | -> | Plus |
arm_X | 16779109..16779549 | 245..685 | 100 | | Plus |
BS06339.pep Sequence
Translation from 16 to 684
> BS06339.pep
MQILQKIKSTKKKFGMRNLATVTYEALQYLEESPCKTQTRENIMNYVKDL
SSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH
FHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADK
TTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENNATPANEATTAP
ATDAPTSMETKSNPTPDGENLG*
BS06339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-PC | 238 | CG4875-PC | 17..238 | 1..222 | 1132 | 100 | Plus |
Rcp-PB | 238 | CG4875-PB | 17..238 | 1..222 | 1132 | 100 | Plus |