Clone Sequence Records
BS06343.3prime Sequence
970 bp (888 high quality bases) assembled on 2005-12-03
> BS06343.3prime
ATGGTCTAGAAAGCTTCTAATCTCCCGCTTTGGTGTCCAGCTTGCCGCCC
TTTTCGATAATCGACCCTAGATCCTTGAGCGACACCTCACCGGTTCCTCT
TTCCAGAGGCTGTGGCTGATTGGGACCGGGTTTCCAGCCCACAAAGTAGA
TGATTTGGAAGGTTGCAGGTATCCCCTTCTCGTTGGGCTTTGCATACAGC
TCCTGGTAGATGGCACTGGCCGCGAGCATCGTTTCTCGACTAAGATGAGC
GGGTCGATTGAATGCAGCATTGTTCTCTGCCATACCCTTGAGATCCCACA
TCAGTTCGAACATGCTGGGATAGCCGATGACCAGTTCATCGGTGTCTATT
GTCAGCATGGTGAAGCCGGCGCGATTAAGCAGGGAACCAATATCCCTAAT
CTGAGTGAAGGGCGAGATGTGCGGAGATATGCCACCTTTGCGCTCCAGCT
CGGCCAATTGGAGCGAGGAGCGCAGCTCGTAGAGGGTGTCTCCACCAAAC
ATGGAGGCTATAAAGACCCCATCCGGTTTCAGACTCTGCTTAATTCTGAC
AAAGCAGCCCGGCAGATCATTCACCCAGTGCAGACTTAGGCTAGAGATGA
CCAGATCCAGTGAATTGTCCTCAAAATCCAGCTGCTCTTCGTCCTTAACT
AGTTTCACCATTTTCAGACCCGGAGTGCCCTGTGCCTGCTCCAGCATCGT
AGCACTGGTGTCCGTGAGCGTCAGCTGCTCCACACTCTCCGCCAGAATGT
GTCTGGACAGATAGCCGCGACTGCATCCGATATCCGCCGCCGCCTTGAAC
TCCCGCTTAATGTCGAATACTCTGTCAGCCAGGCGGAAGCCGATCTCCTC
CTTCAAGTAATCGTATAGTCCAACGTCTTCGCTGAGTGCGGGCCTTTCCT
TCTGTAATCTCTTGGCATTGCGGTCAAATATATGTTGCGATGTTTGGGTG
AGTGAGGATAGGGCGCGGAG
BS06343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-PA | 1002 | CG8067-RA | 49..1002 | 970..17 | 4745 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1321 | CG8067-RB | 281..1234 | 970..17 | 4755 | 99.9 | Minus |
CG8067-RA | 1146 | CG8067-RA | 106..1059 | 970..17 | 4755 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13984198..13984806 | 625..17 | 3045 | 100 | Minus |
2R | 25286936 | 2R | 13983882..13984140 | 884..626 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 13983735..13983823 | 970..882 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:56:57 has no hits.
BS06343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:03 Download gff for
BS06343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 49..1002 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:12 Download gff for
BS06343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 49..1002 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:57 Download gff for
BS06343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 106..1062 | 11..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:33 Download gff for
BS06343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 106..1062 | 11..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:33 Download gff for
BS06343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13983735..13983823 | 882..970 | 98 | -> | Minus |
2R | 13983885..13984140 | 626..881 | 100 | -> | Minus |
2R | 13984198..13984809 | 11..625 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:57 Download gff for
BS06343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9871240..9871328 | 882..970 | 98 | -> | Minus |
arm_2R | 9871390..9871645 | 626..881 | 100 | -> | Minus |
arm_2R | 9871703..9872314 | 11..625 | 99 | | Minus |
BS06343.5prime Sequence
939 bp (796 high quality bases) assembled on 2005-12-03
> BS06343.5prime
GAAGTTATCAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAA
AGGTCAAATGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAA
CATATATTTGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACT
CAGCGAAGACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCC
GCCTGGCTGACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCG
GATATCGGATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAG
TGTGGAGCAGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGG
CACAGGGCACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAG
CAGCTGGATTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAG
TCTGCACTGGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGA
GTCTGAAACCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACC
CTCTACGAGCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGG
TGGCATATCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTT
CCCTGCTTAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAA
CTGGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGG
TATGGCAGAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAG
AAACGATGCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCC
AACGAGAAGGGGATACCTGCAACCTTCAAATCATCTACTTTGTGGGCTGG
AAACCCGTCCCATCAGCCACAGCCTCTGGAAAGAGAACC
BS06343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-PA | 1002 | CG8067-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG8067-PA | 1002 | CG8067-RA | 862..892 | 877..907 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1321 | CG8067-RB | 233..1154 | 17..935 | 4535 | 99.7 | Plus |
CG8067-RA | 1146 | CG8067-RA | 58..979 | 17..935 | 4535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13984198..13984726 | 410..935 | 2500 | 99.1 | Plus |
2R | 25286936 | 2R | 13983882..13984140 | 151..409 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 13983687..13983823 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:40:01 has no hits.
BS06343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:04 Download gff for
BS06343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 1..927 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:13 Download gff for
BS06343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 1..927 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:24 Download gff for
BS06343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 49..984 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:25 Download gff for
BS06343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 49..984 | 10..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:25 Download gff for
BS06343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13983678..13983823 | 10..153 | 97 | -> | Plus |
2R | 13983885..13984140 | 154..409 | 100 | -> | Plus |
2R | 13984198..13984731 | 410..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:24 Download gff for
BS06343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9871183..9871328 | 10..153 | 97 | -> | Plus |
arm_2R | 9871390..9871645 | 154..409 | 100 | -> | Plus |
arm_2R | 9871703..9872236 | 410..939 | 99 | | Plus |
BS06343.complete Sequence
1034 bp (1034 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635450
> BS06343.complete
GAAGTTATCAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAA
AGGTCAAATGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAA
CATATATTTGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACT
CAGCGAAGACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCC
GCCTGGCTGACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCG
GATATCGGATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAG
TGTGGAGCAGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGG
CACAGGGCACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAG
CAGCTGGATTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAG
TCTGCACTGGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGA
GTCTGAAACCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACC
CTCTACGAGCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGG
TGGCATATCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTT
CCCTGCTTAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAA
CTGGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGG
TATGGCAGAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAG
AAACGATGCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCC
AACGAGAAGGGGATACCTGCAACCTTCCAAATCATCTACTTTGTGGGCTG
GAAACCCGGTCCCAATCAGCCACAGCCTCTGGAAAGAGGAACCGGTGAGG
TGTCGCTCAAGGATCTAGGGTCGATTATCGAAAAGGGCGGCAAGCTGGAC
ACCAAAGCGGGAGATTAGAAGCTTTCTAGACCAT
BS06343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1002 | CG8067-PB | 1..1002 | 17..1018 | 5010 | 100 | Plus |
CG8067-RA | 1002 | CG8067-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1321 | CG8067-RB | 233..1234 | 17..1018 | 5010 | 100 | Plus |
CG8067-RA | 1146 | CG8067-RA | 58..1059 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13984198..13984806 | 410..1018 | 3045 | 100 | Plus |
2R | 25286936 | 2R | 13983882..13984140 | 151..409 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 13983687..13983823 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:37 has no hits.
BS06343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:22 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 1..1002 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:50 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 27..1040 | 10..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:59 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 63..1059 | 22..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:22 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 27..1040 | 10..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:12 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 63..1059 | 22..1018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:12 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13983885..13984140 | 154..409 | 100 | -> | Plus |
2R | 13983692..13983823 | 22..153 | 100 | -> | Plus |
2R | 13984198..13984806 | 410..1018 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:59 Download gff for
BS06343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9871197..9871328 | 22..153 | 100 | -> | Plus |
arm_2R | 9871390..9871645 | 154..409 | 100 | -> | Plus |
arm_2R | 9871703..9872311 | 410..1018 | 100 | | Plus |
BS06343.pep Sequence
Translation from 16 to 1017
> BS06343.pep
MLRKLTKLSTLKVKCELRALSSLTQTSQHIFDRNAKRLQKERAALSEDVG
LYDYLKEEIGFRLADRVFDIKREFKAAADIGCSRGYLSRHILAESVEQLT
LTDTSATMLEQAQGTPGLKMVKLVKDEEQLDFEDNSLDLVISSLSLHWVN
DLPGCFVRIKQSLKPDGVFIASMFGGDTLYELRSSLQLAELERKGGISPH
ISPFTQIRDIGSLLNRAGFTMLTIDTDELVIGYPSMFELMWDLKGMAENN
AAFNRPAHLSRETMLAASAIYQELYAKPNEKGIPATFQIIYFVGWKPGPN
QPQPLERGTGEVSLKDLGSIIEKGGKLDTKAGD*
BS06343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-PB | 333 | CG8067-PB | 1..333 | 1..333 | 1695 | 100 | Plus |
CG8067-PA | 333 | CG8067-PA | 1..333 | 1..333 | 1695 | 100 | Plus |