Clone BS06343 Report

Search the DGRC for BS06343

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG8067-RA
Protein status:BS06343.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06343.3prime Sequence

970 bp (888 high quality bases) assembled on 2005-12-03

> BS06343.3prime
ATGGTCTAGAAAGCTTCTAATCTCCCGCTTTGGTGTCCAGCTTGCCGCCC
TTTTCGATAATCGACCCTAGATCCTTGAGCGACACCTCACCGGTTCCTCT
TTCCAGAGGCTGTGGCTGATTGGGACCGGGTTTCCAGCCCACAAAGTAGA
TGATTTGGAAGGTTGCAGGTATCCCCTTCTCGTTGGGCTTTGCATACAGC
TCCTGGTAGATGGCACTGGCCGCGAGCATCGTTTCTCGACTAAGATGAGC
GGGTCGATTGAATGCAGCATTGTTCTCTGCCATACCCTTGAGATCCCACA
TCAGTTCGAACATGCTGGGATAGCCGATGACCAGTTCATCGGTGTCTATT
GTCAGCATGGTGAAGCCGGCGCGATTAAGCAGGGAACCAATATCCCTAAT
CTGAGTGAAGGGCGAGATGTGCGGAGATATGCCACCTTTGCGCTCCAGCT
CGGCCAATTGGAGCGAGGAGCGCAGCTCGTAGAGGGTGTCTCCACCAAAC
ATGGAGGCTATAAAGACCCCATCCGGTTTCAGACTCTGCTTAATTCTGAC
AAAGCAGCCCGGCAGATCATTCACCCAGTGCAGACTTAGGCTAGAGATGA
CCAGATCCAGTGAATTGTCCTCAAAATCCAGCTGCTCTTCGTCCTTAACT
AGTTTCACCATTTTCAGACCCGGAGTGCCCTGTGCCTGCTCCAGCATCGT
AGCACTGGTGTCCGTGAGCGTCAGCTGCTCCACACTCTCCGCCAGAATGT
GTCTGGACAGATAGCCGCGACTGCATCCGATATCCGCCGCCGCCTTGAAC
TCCCGCTTAATGTCGAATACTCTGTCAGCCAGGCGGAAGCCGATCTCCTC
CTTCAAGTAATCGTATAGTCCAACGTCTTCGCTGAGTGCGGGCCTTTCCT
TCTGTAATCTCTTGGCATTGCGGTCAAATATATGTTGCGATGTTTGGGTG
AGTGAGGATAGGGCGCGGAG

BS06343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-PA 1002 CG8067-RA 49..1002 970..17 4745 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-RB 1321 CG8067-RB 281..1234 970..17 4755 99.9 Minus
CG8067-RA 1146 CG8067-RA 106..1059 970..17 4755 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13984198..13984806 625..17 3045 100 Minus
2R 25286936 2R 13983882..13984140 884..626 1295 100 Minus
2R 25286936 2R 13983735..13983823 970..882 430 98.9 Minus
Blast to na_te.dros performed on 2015-02-02 17:56:57 has no hits.

BS06343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:03 Download gff for BS06343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-PA 49..1002 17..970 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:12 Download gff for BS06343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-PA 49..1002 17..970 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:57 Download gff for BS06343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 106..1062 11..970 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:33 Download gff for BS06343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 106..1062 11..970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:33 Download gff for BS06343.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13983735..13983823 882..970 98 -> Minus
2R 13983885..13984140 626..881 100 -> Minus
2R 13984198..13984809 11..625 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:57 Download gff for BS06343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9871240..9871328 882..970 98 -> Minus
arm_2R 9871390..9871645 626..881 100 -> Minus
arm_2R 9871703..9872314 11..625 99   Minus

BS06343.5prime Sequence

939 bp (796 high quality bases) assembled on 2005-12-03

> BS06343.5prime
GAAGTTATCAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAA
AGGTCAAATGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAA
CATATATTTGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACT
CAGCGAAGACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCC
GCCTGGCTGACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCG
GATATCGGATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAG
TGTGGAGCAGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGG
CACAGGGCACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAG
CAGCTGGATTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAG
TCTGCACTGGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGA
GTCTGAAACCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACC
CTCTACGAGCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGG
TGGCATATCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTT
CCCTGCTTAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAA
CTGGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGG
TATGGCAGAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAG
AAACGATGCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCC
AACGAGAAGGGGATACCTGCAACCTTCAAATCATCTACTTTGTGGGCTGG
AAACCCGTCCCATCAGCCACAGCCTCTGGAAAGAGAACC

BS06343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-PA 1002 CG8067-RA 1..861 17..877 4305 100 Plus
CG8067-PA 1002 CG8067-RA 862..892 877..907 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-RB 1321 CG8067-RB 233..1154 17..935 4535 99.7 Plus
CG8067-RA 1146 CG8067-RA 58..979 17..935 4535 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13984198..13984726 410..935 2500 99.1 Plus
2R 25286936 2R 13983882..13984140 151..409 1295 100 Plus
2R 25286936 2R 13983687..13983823 17..153 685 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:40:01 has no hits.

BS06343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:04 Download gff for BS06343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-PA 1..927 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:13 Download gff for BS06343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-PA 1..927 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:24 Download gff for BS06343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 49..984 10..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:25 Download gff for BS06343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 49..984 10..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:25 Download gff for BS06343.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13983678..13983823 10..153 97 -> Plus
2R 13983885..13984140 154..409 100 -> Plus
2R 13984198..13984731 410..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:24 Download gff for BS06343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9871183..9871328 10..153 97 -> Plus
arm_2R 9871390..9871645 154..409 100 -> Plus
arm_2R 9871703..9872236 410..939 99   Plus

BS06343.complete Sequence

1034 bp (1034 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635450

> BS06343.complete
GAAGTTATCAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAA
AGGTCAAATGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAA
CATATATTTGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACT
CAGCGAAGACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCC
GCCTGGCTGACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCG
GATATCGGATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAG
TGTGGAGCAGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGG
CACAGGGCACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAG
CAGCTGGATTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAG
TCTGCACTGGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGA
GTCTGAAACCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACC
CTCTACGAGCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGG
TGGCATATCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTT
CCCTGCTTAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAA
CTGGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGG
TATGGCAGAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAG
AAACGATGCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCC
AACGAGAAGGGGATACCTGCAACCTTCCAAATCATCTACTTTGTGGGCTG
GAAACCCGGTCCCAATCAGCCACAGCCTCTGGAAAGAGGAACCGGTGAGG
TGTCGCTCAAGGATCTAGGGTCGATTATCGAAAAGGGCGGCAAGCTGGAC
ACCAAAGCGGGAGATTAGAAGCTTTCTAGACCAT

BS06343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-RB 1002 CG8067-PB 1..1002 17..1018 5010 100 Plus
CG8067-RA 1002 CG8067-PA 1..1002 17..1018 5010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-RB 1321 CG8067-RB 233..1234 17..1018 5010 100 Plus
CG8067-RA 1146 CG8067-RA 58..1059 17..1018 5010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13984198..13984806 410..1018 3045 100 Plus
2R 25286936 2R 13983882..13984140 151..409 1295 100 Plus
2R 25286936 2R 13983687..13983823 17..153 685 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:37 has no hits.

BS06343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:22 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 1..1002 17..1018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:50 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 27..1040 10..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:59 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 63..1059 22..1018 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:22 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 27..1040 10..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:12 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
CG8067-RA 63..1059 22..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:12 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13983885..13984140 154..409 100 -> Plus
2R 13983692..13983823 22..153 100 -> Plus
2R 13984198..13984806 410..1018 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:59 Download gff for BS06343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9871197..9871328 22..153 100 -> Plus
arm_2R 9871390..9871645 154..409 100 -> Plus
arm_2R 9871703..9872311 410..1018 100   Plus

BS06343.pep Sequence

Translation from 16 to 1017

> BS06343.pep
MLRKLTKLSTLKVKCELRALSSLTQTSQHIFDRNAKRLQKERAALSEDVG
LYDYLKEEIGFRLADRVFDIKREFKAAADIGCSRGYLSRHILAESVEQLT
LTDTSATMLEQAQGTPGLKMVKLVKDEEQLDFEDNSLDLVISSLSLHWVN
DLPGCFVRIKQSLKPDGVFIASMFGGDTLYELRSSLQLAELERKGGISPH
ISPFTQIRDIGSLLNRAGFTMLTIDTDELVIGYPSMFELMWDLKGMAENN
AAFNRPAHLSRETMLAASAIYQELYAKPNEKGIPATFQIIYFVGWKPGPN
QPQPLERGTGEVSLKDLGSIIEKGGKLDTKAGD*

BS06343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8067-PB 333 CG8067-PB 1..333 1..333 1695 100 Plus
CG8067-PA 333 CG8067-PA 1..333 1..333 1695 100 Plus