Clone BS06344 Report

Search the DGRC for BS06344

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptVps37B-RA
Protein status:BS06344.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06344.3prime Sequence

675 bp (674 high quality bases) assembled on 2005-12-03

> BS06344.3prime
ATGGTCTAGAAAGCTTTCAGTACGGTCTGGATGGCGGTGGCATGGGCATC
AGGGGACCCATGATTGGGTAAGGGGCGGAGCCCCCAGACGCGGGATAGAA
TCCGCTGGAGGGCACGTTTCCGTAGGCTGGCAGAGAAGTATTTGGGCCCG
GACCCTGGCGCTGTTTGCGCATCAGCTCCTGCATTTTTTCGGCCTTGAGG
CGACGCAGGTGCATGGTCCTCCGGATAGGGAGGAACGCGTCCAGAAAGTC
CTCCACGCCGATATCGCTGTCGTTGAACTTCTTGACCATCTCCTCGGTCT
GCTCCTCGCTCTCGGAGGCAGCTGTCTGCAGCAGGGCCAGCGCCGTTTCA
AGGCCCACTCCGCCCGACTTCTCCTTGAGCTGTGAGAGTTTCTCCTGGAC
AGAGGAGCACCTGGTGCGCCCATCCTCCGAGAGTTCTGCCAGCTGCCCCC
GCAGCTCGATGATCTGCGGCTCCCGCTCGATATTGCGCTCCGCCCGACTC
CTGTTGTCCTCGAAAACACTGGTCTTTTGTGTTCGGAGCACCTGGAGAAC
TTCGTCAACCTTCTCGTCCAGCTTGTCGTCATCGTTCAGCAGTTCCTTCA
GCTCCTCGTGGCACATCGGGGTGATGGTGGCCCGCAGTTGGTATAGGTAT
TCCTGGTACATGTCGACTGATAACT

BS06344.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1115-PA 645 CG1115-RA 1..645 661..17 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 1041 CG1115-RC 113..757 661..17 3225 100 Minus
Vps37B-RB 975 CG1115-RB 113..757 661..17 3225 100 Minus
Vps37B-RA 1024 CG1115-RA 113..757 661..17 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5226270..5226914 661..17 3225 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:56:04 has no hits.

BS06344.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:05 Download gff for BS06344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 17..661 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:15 Download gff for BS06344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 17..661 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:42 Download gff for BS06344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 104..763 11..670 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:57 Download gff for BS06344.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps37B-RA 104..763 11..670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:57 Download gff for BS06344.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5226261..5226917 17..670 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:42 Download gff for BS06344.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1051983..1052639 17..670 99 <- Minus

BS06344.5prime Sequence

675 bp (674 high quality bases) assembled on 2005-12-03

> BS06344.5prime
GAAGTTATCAGTCGACATGTACCAGGAATACCTATACCAACTGCGGGCCA
CCATCACCCCGATGTGCCACGAGGAGCTGAAGGAACTGCTGAACGATGAC
GACAAGCTGGACGAGAAGGTTGACGAAGTTCTCCAGGTGCTCCGAACACA
AAAGACCAGTGTTTTCGAGGACAACAGGAGTCGGGCGGAGCGCAATATCG
AGCGGGAGCCGCAGATCATCGAGCTGCGGGGGCAGCTGGCAGAACTCTCG
GAGGATGGGCGCACCAGGTGCTCCTCTGTCCAGGAGAAACTCTCACAGCT
CAAGGAGAAGTCGGGCGGAGTGGGCCTTGAAACGGCGCTGGCCCTGCTGC
AGACAGCTGCCTCCGAGAGCGAGGAGCAGACCGAGGAGATGGTCAAGAAG
TTCAACGACAGCGATATCGGCGTGGAGGACTTTCTGGACGCGTTCCTCCC
TATCCGGAGGACCATGCACCTGCGTCGCCTCAAGGCCGAAAAAATGCAGG
AGCTGATGCGCAAACAGCGCCAGGGTCCGGGCCCAAATACTTCTCTGCCA
GCCTACGGAAACGTGCCCTCCAGCGGATTCTATCCCGCGTCTGGGGGCTC
CGCCCCTTACCCAATCATGGGTCCCCTGATGCCCATGCCACCGCCATCCA
GACCGTACTGAAAGCTTTCTAGACC

BS06344.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1115-PA 645 CG1115-RA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 1041 CG1115-RC 113..757 17..661 3225 100 Plus
Vps37B-RB 975 CG1115-RB 113..757 17..661 3225 100 Plus
Vps37B-RA 1024 CG1115-RA 113..757 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5226270..5226914 17..661 3225 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:05:14 has no hits.

BS06344.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:06 Download gff for BS06344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 17..661 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:16 Download gff for BS06344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:34:03 Download gff for BS06344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 104..763 8..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:27 Download gff for BS06344.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps37B-RA 104..763 8..667 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:27 Download gff for BS06344.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5226261..5226917 8..661 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:34:03 Download gff for BS06344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1051983..1052639 8..661 99 <- Plus

BS06344.complete Sequence

677 bp (677 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635451

> BS06344.complete
GAAGTTATCAGTCGACATGTACCAGGAATACCTATACCAACTGCGGGCCA
CCATCACCCCGATGTGCCACGAGGAGCTGAAGGAACTGCTGAACGATGAC
GACAAGCTGGACGAGAAGGTTGACGAAGTTCTCCAGGTGCTCCGAACACA
AAAGACCAGTGTTTTCGAGGACAACAGGAGTCGGGCGGAGCGCAATATCG
AGCGGGAGCCGCAGATCATCGAGCTGCGGGGGCAGCTGGCAGAACTCTCG
GAGGATGGGCGCACCAGGTGCTCCTCTGTCCAGGAGAAACTCTCACAGCT
CAAGGAGAAGTCGGGCGGAGTGGGCCTTGAAACGGCGCTGGCCCTGCTGC
AGACAGCTGCCTCCGAGAGCGAGGAGCAGACCGAGGAGATGGTCAAGAAG
TTCAACGACAGCGATATCGGCGTGGAGGACTTTCTGGACGCGTTCCTCCC
TATCCGGAGGACCATGCACCTGCGTCGCCTCAAGGCCGAAAAAATGCAGG
AGCTGATGCGCAAACAGCGCCAGGGTCCGGGCCCAAATACTTCTCTGCCA
GCCTACGGAAACGTGCCCTCCAGCGGATTCTATCCCGCGTCTGGGGGCTC
CGCCCCTTACCCAATCATGGGTCCCCTGATGCCCATGCCACCGCCATCCA
GACCGTACTGAAAGCTTTCTAGACCAT

BS06344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 645 CG1115-PC 1..645 17..661 3225 100 Plus
Vps37B-RB 645 CG1115-PB 1..645 17..661 3225 100 Plus
Vps37B-RA 645 CG1115-PA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 1041 CG1115-RC 113..757 17..661 3225 100 Plus
Vps37B-RB 975 CG1115-RB 113..757 17..661 3225 100 Plus
Vps37B-RA 1024 CG1115-RA 113..757 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5226270..5226914 17..661 3225 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:49:27 has no hits.

BS06344.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:23 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:52 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 102..761 8..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:18 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 113..756 17..660 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:24 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 102..761 8..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:46 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
Vps37B-RA 113..756 17..660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:46 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5226270..5226913 17..660 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:18 Download gff for BS06344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1051992..1052635 17..660 100   Plus

BS06344.pep Sequence

Translation from 16 to 660

> BS06344.pep
MYQEYLYQLRATITPMCHEELKELLNDDDKLDEKVDEVLQVLRTQKTSVF
EDNRSRAERNIEREPQIIELRGQLAELSEDGRTRCSSVQEKLSQLKEKSG
GVGLETALALLQTAASESEEQTEEMVKKFNDSDIGVEDFLDAFLPIRRTM
HLRRLKAEKMQELMRKQRQGPGPNTSLPAYGNVPSSGFYPASGGSAPYPI
MGPLMPMPPPSRPY*

BS06344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-PC 214 CG1115-PC 1..214 1..214 1097 100 Plus
Vps37B-PB 214 CG1115-PB 1..214 1..214 1097 100 Plus
Vps37B-PA 214 CG1115-PA 1..214 1..214 1097 100 Plus