Clone BS06345 Report

Search the DGRC for BS06345

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptPCNA-RA
Protein status:BS06345.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06345.3prime Sequence

813 bp (812 high quality bases) assembled on 2005-12-03

> BS06345.3prime
ATGGTCTAGAAAGCTTTTATGTCTCGTTGTCCTCGATCTTGGGTGCCAGG
TAGTAGCGAATGTGACCCAGATCCTTGATCGCATACTCGACTACCAGCGG
AACATCTGCGCACATCGACAGCTGCACTTGGGTGGACAATGGCGTCGCCT
TTGTGAAGGCGTTCAGGTAGCGACAGGCAAATGTCAGCGTCACCGGCTCC
TGCATCTCGATGATCACCGCCTCCTCCTCCTTGTCGACAGAGCCGGTTTG
GGCTAGCTTAATGTTGGCGGTGCCCACATCGCCGCTGGCCGAGAACTTGA
CGCCCTCCTTGGTGCAGCAGATCACAACGGATTCGCTGAACTGCGCCAGA
TCGCGGCAGATGCGAGCGAACTCCATGGCCGGCATGCGGACCACGCACGA
GAAGTCTGTCTCCGGTATGCCCAGGTGCTCCTGGTCGAGGTTCATCAGTT
TCATCTCGTAGTCCGATACCTTCTCCTGGTTAGCCGATTCGAACATGATG
GTGACAGTGTCGGCGTTATCCTGCGCCTTCATCGTCACATTGTCCTCGTT
GTTGGCGCATTTCAGAATCTTGGCCATGCTGCCCAGATTCATGCCCATGG
AGAGATTGCGGTCGCAGCGAAACTTGTCGAAGCCATCGGAACGCAGGGTC
AGCGAGACAAGCGACACATGGGAGTTGTCCATGGCCTGTAGCTGAATGCC
GGAGTCGCTGCAATCGAAGGTTGCCTCATTGAGCAGATCCTTGATGGCAT
CCAAGATCTTCTTCAGGATGGTGGCTTGACCCAGGCGTGCCTCGAACATG
TCGACTGATAACT

BS06345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9193-PB 783 mus209-RB 1..783 799..17 3915 100 Minus
CG9193-PA 783 mus209-RA 1..783 799..17 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
PCNA-RA 1070 CG9193-RA 163..945 799..17 3915 100 Minus
PCNA-RB 997 CG9193-RB 90..872 799..17 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20261879..20262556 17..694 3390 100 Plus
2R 25286936 2R 20262614..20262721 692..799 540 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:14:31 has no hits.

BS06345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:08 Download gff for BS06345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9193-PA 1..783 17..799 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:17 Download gff for BS06345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9193-PA 1..783 17..799 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:17 Download gff for BS06345.3prime
Subject Subject Range Query Range Percent Splice Strand
mus209-RB 82..872 17..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:55 Download gff for BS06345.3prime
Subject Subject Range Query Range Percent Splice Strand
PCNA-RB 82..872 17..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:55 Download gff for BS06345.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20261879..20262553 17..691 100 <- Plus
2R 20262614..20262729 692..807 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:17 Download gff for BS06345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16149384..16150058 17..691 100 <- Plus
arm_2R 16150119..16150234 692..807 97   Plus

BS06345.5prime Sequence

813 bp (812 high quality bases) assembled on 2005-12-03

> BS06345.5prime
GAAGTTATCAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCC
TGAAGAAGATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTC
GATTGCAGCGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGT
GTCGCTTGTCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCT
GCGACCGCAATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATT
CTGAAATGCGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAA
CGCCGACACTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTAT
CGGACTACGAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATA
CCGGAGACAGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGC
TCGCATCTGCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCT
GCACCAAGGAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCC
AACATTAAGCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGT
GATCATCGAGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACC
TGAACGCCTTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCG
ATGTGCGCAGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGG
TCACATTCGCTACTACCTGGCACCCAAGATCGAGGACAACGAGACATAAA
AGCTTTCTAGACC

BS06345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9193-PB 783 mus209-RB 1..783 17..799 3915 100 Plus
CG9193-PA 783 mus209-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
PCNA-RA 1070 CG9193-RA 163..945 17..799 3915 100 Plus
PCNA-RB 997 CG9193-RB 90..872 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20261879..20262556 799..122 3390 100 Minus
2R 25286936 2R 20262614..20262721 124..17 540 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:23:42 has no hits.

BS06345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:09 Download gff for BS06345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9193-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:19 Download gff for BS06345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9193-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:39:57 Download gff for BS06345.5prime
Subject Subject Range Query Range Percent Splice Strand
mus209-RB 82..872 9..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:26:48 Download gff for BS06345.5prime
Subject Subject Range Query Range Percent Splice Strand
PCNA-RB 82..872 9..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:26:48 Download gff for BS06345.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20261879..20262553 125..799 100 <- Minus
2R 20262614..20262729 9..124 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:39:57 Download gff for BS06345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16150119..16150234 9..124 97   Minus
arm_2R 16149384..16150058 125..799 100 <- Minus

BS06345.complete Sequence

815 bp (815 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635452

> BS06345.complete
GAAGTTATCAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCC
TGAAGAAGATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTC
GATTGCAGCGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGT
GTCGCTTGTCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCT
GCGACCGCAATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATT
CTGAAATGCGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAA
CGCCGACACTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTAT
CGGACTACGAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATA
CCGGAGACAGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGC
TCGCATCTGCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCT
GCACCAAGGAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCC
AACATTAAGCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGT
GATCATCGAGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACC
TGAACGCCTTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCG
ATGTGCGCAGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGG
TCACATTCGCTACTACCTGGCACCCAAGATCGAGGACAACGAGACATAAA
AGCTTTCTAGACCAT

BS06345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
PCNA-RA 783 CG9193-PA 1..783 17..799 3915 100 Plus
PCNA-RB 783 CG9193-PB 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
PCNA-RA 1070 CG9193-RA 163..945 17..799 3915 100 Plus
PCNA-RB 997 CG9193-RB 90..872 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20261879..20262556 799..122 3390 100 Minus
2R 25286936 2R 20262614..20262721 124..17 540 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:56:27 has no hits.

BS06345.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:59 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
mus209-RA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:26 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
mus209-RA 129..919 9..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:12 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
mus209-RB 95..870 22..797 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:59 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
mus209-RA 129..919 9..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:19 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
PCNA-RB 95..870 22..797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:19 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20261881..20262553 125..797 100 <- Minus
2R 20262614..20262716 22..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:12 Download gff for BS06345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16149386..16150058 125..797 100 <- Minus
arm_2R 16150119..16150221 22..124 100   Minus

BS06345.pep Sequence

Translation from 16 to 798

> BS06345.pep
MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSL
TLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVT
IMFESANQEKVSDYEMKLMNLDQEHLGIPETDFSCVVRMPAMEFARICRD
LAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQ
EPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYY
LAPKIEDNET*

BS06345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
PCNA-PA 260 CG9193-PA 1..260 1..260 1324 100 Plus
PCNA-PB 260 CG9193-PB 1..260 1..260 1324 100 Plus
CG10262-PA 255 CG10262-PA 1..252 1..257 788 55.3 Plus