Clone Sequence Records
BS06345.3prime Sequence
813 bp (812 high quality bases) assembled on 2005-12-03
> BS06345.3prime
ATGGTCTAGAAAGCTTTTATGTCTCGTTGTCCTCGATCTTGGGTGCCAGG
TAGTAGCGAATGTGACCCAGATCCTTGATCGCATACTCGACTACCAGCGG
AACATCTGCGCACATCGACAGCTGCACTTGGGTGGACAATGGCGTCGCCT
TTGTGAAGGCGTTCAGGTAGCGACAGGCAAATGTCAGCGTCACCGGCTCC
TGCATCTCGATGATCACCGCCTCCTCCTCCTTGTCGACAGAGCCGGTTTG
GGCTAGCTTAATGTTGGCGGTGCCCACATCGCCGCTGGCCGAGAACTTGA
CGCCCTCCTTGGTGCAGCAGATCACAACGGATTCGCTGAACTGCGCCAGA
TCGCGGCAGATGCGAGCGAACTCCATGGCCGGCATGCGGACCACGCACGA
GAAGTCTGTCTCCGGTATGCCCAGGTGCTCCTGGTCGAGGTTCATCAGTT
TCATCTCGTAGTCCGATACCTTCTCCTGGTTAGCCGATTCGAACATGATG
GTGACAGTGTCGGCGTTATCCTGCGCCTTCATCGTCACATTGTCCTCGTT
GTTGGCGCATTTCAGAATCTTGGCCATGCTGCCCAGATTCATGCCCATGG
AGAGATTGCGGTCGCAGCGAAACTTGTCGAAGCCATCGGAACGCAGGGTC
AGCGAGACAAGCGACACATGGGAGTTGTCCATGGCCTGTAGCTGAATGCC
GGAGTCGCTGCAATCGAAGGTTGCCTCATTGAGCAGATCCTTGATGGCAT
CCAAGATCTTCTTCAGGATGGTGGCTTGACCCAGGCGTGCCTCGAACATG
TCGACTGATAACT
BS06345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9193-PB | 783 | mus209-RB | 1..783 | 799..17 | 3915 | 100 | Minus |
CG9193-PA | 783 | mus209-RA | 1..783 | 799..17 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PCNA-RA | 1070 | CG9193-RA | 163..945 | 799..17 | 3915 | 100 | Minus |
PCNA-RB | 997 | CG9193-RB | 90..872 | 799..17 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20261879..20262556 | 17..694 | 3390 | 100 | Plus |
2R | 25286936 | 2R | 20262614..20262721 | 692..799 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:14:31 has no hits.
BS06345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:08 Download gff for
BS06345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9193-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:17 Download gff for
BS06345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9193-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:17 Download gff for
BS06345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus209-RB | 82..872 | 17..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:55 Download gff for
BS06345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PCNA-RB | 82..872 | 17..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:55 Download gff for
BS06345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20261879..20262553 | 17..691 | 100 | <- | Plus |
2R | 20262614..20262729 | 692..807 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:17 Download gff for
BS06345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16149384..16150058 | 17..691 | 100 | <- | Plus |
arm_2R | 16150119..16150234 | 692..807 | 97 | | Plus |
BS06345.5prime Sequence
813 bp (812 high quality bases) assembled on 2005-12-03
> BS06345.5prime
GAAGTTATCAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCC
TGAAGAAGATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTC
GATTGCAGCGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGT
GTCGCTTGTCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCT
GCGACCGCAATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATT
CTGAAATGCGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAA
CGCCGACACTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTAT
CGGACTACGAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATA
CCGGAGACAGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGC
TCGCATCTGCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCT
GCACCAAGGAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCC
AACATTAAGCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGT
GATCATCGAGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACC
TGAACGCCTTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCG
ATGTGCGCAGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGG
TCACATTCGCTACTACCTGGCACCCAAGATCGAGGACAACGAGACATAAA
AGCTTTCTAGACC
BS06345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9193-PB | 783 | mus209-RB | 1..783 | 17..799 | 3915 | 100 | Plus |
CG9193-PA | 783 | mus209-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PCNA-RA | 1070 | CG9193-RA | 163..945 | 17..799 | 3915 | 100 | Plus |
PCNA-RB | 997 | CG9193-RB | 90..872 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20261879..20262556 | 799..122 | 3390 | 100 | Minus |
2R | 25286936 | 2R | 20262614..20262721 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:23:42 has no hits.
BS06345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:09 Download gff for
BS06345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9193-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:19 Download gff for
BS06345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9193-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:39:57 Download gff for
BS06345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus209-RB | 82..872 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:26:48 Download gff for
BS06345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PCNA-RB | 82..872 | 9..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:26:48 Download gff for
BS06345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20261879..20262553 | 125..799 | 100 | <- | Minus |
2R | 20262614..20262729 | 9..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:39:57 Download gff for
BS06345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16150119..16150234 | 9..124 | 97 | | Minus |
arm_2R | 16149384..16150058 | 125..799 | 100 | <- | Minus |
BS06345.complete Sequence
815 bp (815 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635452
> BS06345.complete
GAAGTTATCAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCC
TGAAGAAGATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTC
GATTGCAGCGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGT
GTCGCTTGTCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCT
GCGACCGCAATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATT
CTGAAATGCGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAA
CGCCGACACTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTAT
CGGACTACGAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATA
CCGGAGACAGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGC
TCGCATCTGCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCT
GCACCAAGGAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCC
AACATTAAGCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGT
GATCATCGAGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACC
TGAACGCCTTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCG
ATGTGCGCAGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGG
TCACATTCGCTACTACCTGGCACCCAAGATCGAGGACAACGAGACATAAA
AGCTTTCTAGACCAT
BS06345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PCNA-RA | 783 | CG9193-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
PCNA-RB | 783 | CG9193-PB | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PCNA-RA | 1070 | CG9193-RA | 163..945 | 17..799 | 3915 | 100 | Plus |
PCNA-RB | 997 | CG9193-RB | 90..872 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20261879..20262556 | 799..122 | 3390 | 100 | Minus |
2R | 25286936 | 2R | 20262614..20262721 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:56:27 has no hits.
BS06345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:59 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus209-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:26 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus209-RA | 129..919 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:12 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus209-RB | 95..870 | 22..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:59 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus209-RA | 129..919 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:19 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PCNA-RB | 95..870 | 22..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:19 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20261881..20262553 | 125..797 | 100 | <- | Minus |
2R | 20262614..20262716 | 22..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:12 Download gff for
BS06345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16149386..16150058 | 125..797 | 100 | <- | Minus |
arm_2R | 16150119..16150221 | 22..124 | 100 | | Minus |
BS06345.pep Sequence
Translation from 16 to 798
> BS06345.pep
MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSL
TLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVT
IMFESANQEKVSDYEMKLMNLDQEHLGIPETDFSCVVRMPAMEFARICRD
LAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQ
EPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYY
LAPKIEDNET*
BS06345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PCNA-PA | 260 | CG9193-PA | 1..260 | 1..260 | 1324 | 100 | Plus |
PCNA-PB | 260 | CG9193-PB | 1..260 | 1..260 | 1324 | 100 | Plus |
CG10262-PA | 255 | CG10262-PA | 1..252 | 1..257 | 788 | 55.3 | Plus |