Clone BS06352 Report

Search the DGRC for BS06352

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG10053-RA
Protein status:BS06352.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06352.3prime Sequence

831 bp (830 high quality bases) assembled on 2005-12-03

> BS06352.3prime
ATGGTCTAGAAAGCTTCTAGTGTTCGTCACGAGTGAGTCCTGGACAGTTG
GAGCCCAGATCTTCGGCGTCATCGTAATGGGTCCCACACCAATAGCAGAA
GCAATAGGCTGTGCGCAGGTAGCCAGTGAGGAGTTCTAATTGCTCCGAGG
GACTGTATGGTTCTTGCTTAGGTGGCACCTCGACTTCAGGATCGTCGGCG
TCGCTCTGTGATTCATCTTCATCTTTTGGTTTAGGTGGCCAAAAGAAATC
GAGATCTGGTTCTGTGATAGCGGACTTAAGATCCAACGATTCGCAGGTCT
GCTGGCACCGTTTTATGTCATACTGTAATTTTCGCTCCTCCGCTTTATGG
GTCGCGCGCCTCCTATAAGCCTCTGTACTGACTTCCTCGTCGCTTTTAAT
GCCGGCCTTGTTTAGGAGATGTGCCCTCCGCAACTTCTGCCGCTTGAGGG
CCAACTCTGCAACGGCTGCCTCGCGCCCAAGTCCTCCACGACCGCTCTTT
ATAGTTATCCCCACGGGTTCAGTACGAGCATCCGAAGTTATGCCCAACCC
AGAACCGGCTTTGTAGCCCATCTTGGCCAGTAGCTGGAATCCTTTGTTGT
CGGCGGAAATTGGTTTGTTGAGGGACTGTTGAAGGCGAACATTGTCTACG
TTCCCGGAAGAAGCTGCTGTCTCCCGTTGGCGCTTCTTCAGCTCATCTTT
CTTGGACTCGACTTCAATCTGCCGCTTTCTGCCGCGATTGTGCACCAAAC
TCGGTCGGACATCTTGCAGACCAACCAGGAATTTGTCGGACATATAATCC
TCCTCCTCGTCAGACATGTCGACTGATAACT

BS06352.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-PA 801 CG10053-RA 1..801 817..17 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-RB 982 CG10053-RB 161..961 817..17 4005 100 Minus
CG10053-RA 856 CG10053-RA 35..835 817..17 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7247365..7248119 771..17 3775 100 Minus
3R 32079331 3R 7247250..7247296 817..771 235 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:16:53 has no hits.

BS06352.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:22 Download gff for BS06352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:37 Download gff for BS06352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:39 Download gff for BS06352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 28..837 12..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:11 Download gff for BS06352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 28..837 12..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:11 Download gff for BS06352.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7247243..7247296 771..825 92 -> Minus
3R 7247366..7248121 12..770 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:39 Download gff for BS06352.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3072965..3073018 771..825 92 -> Minus
arm_3R 3073088..3073843 12..770 99   Minus

BS06352.5prime Sequence

831 bp (780 high quality bases) assembled on 2005-12-03

> BS06352.5prime
GAAGTTATCAGTCGACATGTCTGACGAGGAGGAGGATTATATGTCCGACA
AATTCCTGGTTGGTCTGCAAGATGTCCGACCGAGTTTGGTGCACAATCGC
GGCAGAAAGCGGCAGATTGAAGTCGAGTCCAAGAAAGATGAGCTGAAGAA
GCGCCAACGGGAGACAGCAGCTTCTTCCGGGAACGTAGACAATGTTCGCC
TTCAACAGTCCCTCAACAAACCAATTTCCGCCGACAACAAAGGATTCCAG
CTACTGGCCAAGATGGGCTACAAAGCCGGTTCTGGGTTGGGCATAACTTC
GGATGCTCGTACTGAACCCGTGGGGATAACTATAAAGAGCGGTCGTGGAG
GACTTGGGCGCGAGGCAGCCGTTGCAGAGTTGGCCCTCAAGCGGCAGAAG
TTGCGGAGGGCACATCTCCTAAACAAGGCCGGCATTAAAAGCGACGAGGA
AGTCAGTACAGAGGCTTATAGGAGGCGCGCGACCCATAAAGCGGAGGAGC
GAAAATTACAGTATGACATAAAACGGTGCCAGCAGACCTGCGAATCGTTG
GATCTTAAGTCCGCTATCACAGAACCAGATCTCGATTTCTTTTGGCCACC
TAAACCAAAAGATGAAGATGAATCACAGAGCGACGCCGACGATCCTGAAG
TCGAGGTGCCACCTAAGCAAGAACCATACAGTCCCTCGGAGCAATTAGAA
CTCCTCACTGGCTACCTGCGCACAGCCTATTGCTTCTGCTATTGGTGTGG
GACCCATTACGATGACGCCGAAGATCTGGGCTCCCACTGTCCAGGACTCA
CTCGTGACGAACACTAGAAGCTTTCTAGACC

BS06352.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-PA 801 CG10053-RA 1..801 17..817 3980 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-RB 982 CG10053-RB 161..961 17..817 3990 99.9 Plus
CG10053-RA 856 CG10053-RA 35..835 17..817 3990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7247365..7248119 63..817 3760 99.9 Plus
3R 32079331 3R 7247250..7247296 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:54:12 has no hits.

BS06352.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:23 Download gff for BS06352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:39 Download gff for BS06352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:45:16 Download gff for BS06352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 28..837 9..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:45 Download gff for BS06352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 28..837 9..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:45 Download gff for BS06352.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7247243..7247296 9..63 92 -> Plus
3R 7247366..7248121 64..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:45:16 Download gff for BS06352.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3072965..3073018 9..63 92 -> Plus
arm_3R 3073088..3073843 64..822 99   Plus

BS06352.complete Sequence

833 bp (833 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635454

> BS06352.complete
GAAGTTATCAGTCGACATGTCTGACGAGGAGGAGGATTATATGTCCGACA
AATTCCTGGTTGGTCTGCAAGATGTCCGACCGAGTTTGGTGCACAATCGC
GGCAGAAAGCGGCAGATTGAAGTCGAGTCCAAGAAAGATGAGCTGAAGAA
GCGCCAACGGGAGACAGCAGCTTCTTCCGGGAACGTAGACAATGTTCGCC
TTCAACAGTCCCTCAACAAACCAATTTCCGCCGACAACAAAGGATTCCAG
CTACTGGCCAAGATGGGCTACAAAGCCGGTTCTGGGTTGGGCATAACTTC
GGATGCTCGTACTGAACCCGTGGGGATAACTATAAAGAGCGGTCGTGGAG
GACTTGGGCGCGAGGCAGCCGTTGCAGAGTTGGCCCTCAAGCGGCAGAAG
TTGCGGAGGGCACATCTCCTAAACAAGGCCGGCATTAAAAGCGACGAGGA
AGTCAGTACAGAGGCTTATAGGAGGCGCGCGACCCATAAAGCGGAGGAGC
GAAAATTACAGTATGACATAAAACGGTGCCAGCAGACCTGCGAATCGTTG
GATCTTAAGTCCGCTATCACAGAACCAGATCTCGATTTCTTTTGGCCACC
TAAACCAAAAGATGAAGATGAATCACAGAGCGACGCCGACGATCCTGAAG
TCGAGGTGCCACCTAAGCAAGAACCATACAGTCCCTCGGAGCAATTAGAA
CTCCTCACTGGCTACCTGCGCACAGCCTATTGCTTCTGCTATTGGTGTGG
GACCCATTACGATGACGCCGAAGATCTGGGCTCCAACTGTCCAGGACTCA
CTCGTGACGAACACTAGAAGCTTTCTAGACCAT

BS06352.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-RB 801 CG10053-PB 1..801 17..817 4005 100 Plus
CG10053-RA 801 CG10053-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-RB 982 CG10053-RB 161..961 17..817 4005 100 Plus
CG10053-RA 856 CG10053-RA 35..835 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7247365..7248119 63..817 3775 100 Plus
3R 32079331 3R 7247250..7247296 17..63 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:46:14 has no hits.

BS06352.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:02 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:29 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 3..812 9..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:22 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 35..835 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:02 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 3..812 9..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:18 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG10053-RA 35..835 17..817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:18 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7247250..7247296 17..63 100 -> Plus
3R 7247366..7248119 64..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:22 Download gff for BS06352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3072972..3073018 17..63 100 -> Plus
arm_3R 3073088..3073841 64..817 100   Plus

BS06352.pep Sequence

Translation from 16 to 816

> BS06352.pep
MSDEEEDYMSDKFLVGLQDVRPSLVHNRGRKRQIEVESKKDELKKRQRET
AASSGNVDNVRLQQSLNKPISADNKGFQLLAKMGYKAGSGLGITSDARTE
PVGITIKSGRGGLGREAAVAELALKRQKLRRAHLLNKAGIKSDEEVSTEA
YRRRATHKAEERKLQYDIKRCQQTCESLDLKSAITEPDLDFFWPPKPKDE
DESQSDADDPEVEVPPKQEPYSPSEQLELLTGYLRTAYCFCYWCGTHYDD
AEDLGSNCPGLTRDEH*

BS06352.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10053-PB 266 CG10053-PB 1..266 1..266 1394 100 Plus
CG10053-PA 266 CG10053-PA 1..266 1..266 1394 100 Plus