Clone BS06353 Report

Search the DGRC for BS06353

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptPex2-RA
Protein status:BS06353.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06353.3prime Sequence

806 bp (787 high quality bases) assembled on 2005-12-03

> BS06353.3prime
ATGGTCTAGAAAGCTTTCAGACACTTTGGATTCCCGACTCAGGACACGCA
GAACCGCAGTTGGGGCAGCAGAAACTGGCATCCGTTAAAACATTTGCATT
AAGGCAGTAATAGCAATAAATATGACCACAGCCCATGTGGTGGGGCAATG
TGGGTCGCTCTCCACAGAATGTGCAGGTGGTGCTTAGTGTCATCTGCGGC
GCCAGGAAAGCCGGACCATCTCTATCCTCTAACCGTCGTCCGGAAAATGT
CCATGATTTTAGCACTCTTTGTAGCTTACGGAAATTGATGATGGGCAACA
CCAGTCCGAGGATTTCCATAAATCCTCCCCACAGCAGCTCCCTCGTTAGG
TACTTGTAGCCAATGTCTCTCCTTTGATTGTTCCGCAGACTAATGTAGTC
CAATCCCAATAAGTAGTCCACCAAAGTGGGTTTTCGTCCTGTCTTCAGGA
ACCGAAAGTAATTGAGGATGTTCAGTATCAGGGCACTGTTCTCCACCCAC
ATAATCGCCTCGCTAAACCATTCTACGCGCCTTGTTAAGCGTCGCTCCTC
CCAGCTCTTCACGTAGCCCGGCAAGACGGTCAGGATGAAATGGAGCACCA
GCCTGGAAACGGTCAGCTTTTCGGCATCGTAAGCCAGAACCAGTAGCTGT
TGGCCAAAAGTGGAGCACCGCTTGCCGACGGAACCAAACCAAATTGCGGA
TTGAATGATCAAGTCGAGCTCCGGTTGGATTTTGATGAACAAAACGGGTG
AGATGGCTTGCAAGTTCTCCAGCAGATTATCGCGTATCAGGCGGGCAATG
TCCTTG

BS06353.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7081-PA 846 CG7081-RA 57..846 806..17 3950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pex2-RA 1051 CG7081-RA 161..950 806..17 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8339390..8339822 748..316 2165 100 Minus
3L 28110227 3L 8339875..8340175 317..17 1505 100 Minus
3L 28110227 3L 8339277..8339334 806..749 290 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:36:50 has no hits.

BS06353.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:24 Download gff for BS06353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7081-PA 57..846 17..806 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:41 Download gff for BS06353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7081-PA 57..846 17..806 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:51 Download gff for BS06353.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex2-RA 161..950 17..806 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:48 Download gff for BS06353.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex2-RA 161..950 17..806 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:48 Download gff for BS06353.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8339277..8339334 749..806 100 -> Minus
3L 8339390..8339821 317..748 100 -> Minus
3L 8339876..8340175 17..316 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:51 Download gff for BS06353.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8332377..8332434 749..806 100 -> Minus
arm_3L 8332490..8332921 317..748 100 -> Minus
arm_3L 8332976..8333275 17..316 100   Minus

BS06353.5prime Sequence

876 bp (842 high quality bases) assembled on 2005-12-03

> BS06353.5prime
GAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATC
AGATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGAT
AATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAAT
CCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCG
TCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTAC
GATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGAC
CGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGC
GCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTG
ATACTGAACATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACC
CACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACA
ATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGG
GGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCG
TAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAG
AGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACC
ACCTGCACATTCTGTGGAGAGCGACCCACATTGCCCCACCACATGGGCTG
TGGTCATATTTATTGCTATTACTGCCTTAATGCAAATGTTTTAACGGATG
CCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTCGGGAAAT
CAAAGTGTCTGAAAGCTTTCTAGACC

BS06353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7081-PA 846 CG7081-RA 1..846 17..862 4180 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pex2-RA 1051 CG7081-RA 105..950 17..862 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8339390..8339822 131..563 2165 100 Plus
3L 28110227 3L 8339875..8340175 562..862 1475 99.3 Plus
3L 28110227 3L 8339255..8339334 51..130 400 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:54:37 has no hits.

BS06353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:26 Download gff for BS06353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7081-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:42 Download gff for BS06353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7081-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:58 Download gff for BS06353.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex2-RA 105..950 17..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:27:28 Download gff for BS06353.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex2-RA 105..950 17..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:27:28 Download gff for BS06353.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8339155..8339190 17..52 100 -> Plus
3L 8339257..8339334 53..130 100 -> Plus
3L 8339390..8339821 131..562 100 -> Plus
3L 8339876..8340175 563..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:58 Download gff for BS06353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8332255..8332290 17..52 100 -> Plus
arm_3L 8332357..8332434 53..130 100 -> Plus
arm_3L 8332490..8332921 131..562 100 -> Plus
arm_3L 8332976..8333275 563..862 99   Plus

BS06353.complete Sequence

878 bp (878 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635455

> BS06353.complete
GAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATC
AGATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGAT
AATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAAT
CCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCG
TCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTAC
GATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGAC
CGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGC
GCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTG
ATACTGAACATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACC
CACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACA
ATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGG
GGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCG
TAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAG
AGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACC
ACCTGCACATTCTGTGGAGAGCGACCCACATTGCCCCACCACATGGGCTG
TGGTCATATTTATTGCTATTACTGCCTTAATGCAAATGTTTTAACGGATG
CCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTCGGGAATC
CAAAGTGTCTGAAAGCTTTCTAGACCAT

BS06353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pex2-RA 846 CG7081-PA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pex2-RA 1051 CG7081-RA 105..950 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8339390..8339822 131..563 2165 100 Plus
3L 28110227 3L 8339875..8340175 562..862 1505 100 Plus
3L 28110227 3L 8339255..8339334 51..130 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:38:12 has no hits.

BS06353.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:04 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7081-RA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:31 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7081-RA 103..948 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:26 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
Pex2-RA 105..949 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:04 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7081-RA 103..948 17..862 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:25 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
Pex2-RA 105..949 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:25 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8339155..8339190 17..52 100 -> Plus
3L 8339257..8339334 53..130 100 -> Plus
3L 8339390..8339821 131..562 100 -> Plus
3L 8339876..8340174 563..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:26 Download gff for BS06353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8332255..8332290 17..52 100 -> Plus
arm_3L 8332357..8332434 53..130 100 -> Plus
arm_3L 8332490..8332921 131..562 100 -> Plus
arm_3L 8332976..8333274 563..861 100   Plus

BS06353.pep Sequence

Translation from 16 to 861

> BS06353.pep
MEKNKYVPRVNQIDAIYLNKDIARLIRDNLLENLQAISPVLFIKIQPELD
LIIQSAIWFGSVGKRCSTFGQQLLVLAYDAEKLTVSRLVLHFILTVLPGY
VKSWEERRLTRRVEWFSEAIMWVENSALILNILNYFRFLKTGRKPTLVDY
LLGLDYISLRNNQRRDIGYKYLTRELLWGGFMEILGLVLPIINFRKLQRV
LKSWTFSGRRLEDRDGPAFLAPQMTLSTTCTFCGERPTLPHHMGCGHIYC
YYCLNANVLTDASFCCPNCGSACPESGIQSV*

BS06353.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pex2-PA 281 CG7081-PA 1..281 1..281 1490 100 Plus