Clone Sequence Records
BS06353.3prime Sequence
806 bp (787 high quality bases) assembled on 2005-12-03
> BS06353.3prime
ATGGTCTAGAAAGCTTTCAGACACTTTGGATTCCCGACTCAGGACACGCA
GAACCGCAGTTGGGGCAGCAGAAACTGGCATCCGTTAAAACATTTGCATT
AAGGCAGTAATAGCAATAAATATGACCACAGCCCATGTGGTGGGGCAATG
TGGGTCGCTCTCCACAGAATGTGCAGGTGGTGCTTAGTGTCATCTGCGGC
GCCAGGAAAGCCGGACCATCTCTATCCTCTAACCGTCGTCCGGAAAATGT
CCATGATTTTAGCACTCTTTGTAGCTTACGGAAATTGATGATGGGCAACA
CCAGTCCGAGGATTTCCATAAATCCTCCCCACAGCAGCTCCCTCGTTAGG
TACTTGTAGCCAATGTCTCTCCTTTGATTGTTCCGCAGACTAATGTAGTC
CAATCCCAATAAGTAGTCCACCAAAGTGGGTTTTCGTCCTGTCTTCAGGA
ACCGAAAGTAATTGAGGATGTTCAGTATCAGGGCACTGTTCTCCACCCAC
ATAATCGCCTCGCTAAACCATTCTACGCGCCTTGTTAAGCGTCGCTCCTC
CCAGCTCTTCACGTAGCCCGGCAAGACGGTCAGGATGAAATGGAGCACCA
GCCTGGAAACGGTCAGCTTTTCGGCATCGTAAGCCAGAACCAGTAGCTGT
TGGCCAAAAGTGGAGCACCGCTTGCCGACGGAACCAAACCAAATTGCGGA
TTGAATGATCAAGTCGAGCTCCGGTTGGATTTTGATGAACAAAACGGGTG
AGATGGCTTGCAAGTTCTCCAGCAGATTATCGCGTATCAGGCGGGCAATG
TCCTTG
BS06353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7081-PA | 846 | CG7081-RA | 57..846 | 806..17 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 1051 | CG7081-RA | 161..950 | 806..17 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8339390..8339822 | 748..316 | 2165 | 100 | Minus |
3L | 28110227 | 3L | 8339875..8340175 | 317..17 | 1505 | 100 | Minus |
3L | 28110227 | 3L | 8339277..8339334 | 806..749 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:36:50 has no hits.
BS06353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:24 Download gff for
BS06353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 57..846 | 17..806 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:41 Download gff for
BS06353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 57..846 | 17..806 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:51 Download gff for
BS06353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 161..950 | 17..806 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:48 Download gff for
BS06353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 161..950 | 17..806 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:48 Download gff for
BS06353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8339277..8339334 | 749..806 | 100 | -> | Minus |
3L | 8339390..8339821 | 317..748 | 100 | -> | Minus |
3L | 8339876..8340175 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:51 Download gff for
BS06353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8332377..8332434 | 749..806 | 100 | -> | Minus |
arm_3L | 8332490..8332921 | 317..748 | 100 | -> | Minus |
arm_3L | 8332976..8333275 | 17..316 | 100 | | Minus |
BS06353.5prime Sequence
876 bp (842 high quality bases) assembled on 2005-12-03
> BS06353.5prime
GAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATC
AGATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGAT
AATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAAT
CCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCG
TCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTAC
GATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGAC
CGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGC
GCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTG
ATACTGAACATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACC
CACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACA
ATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGG
GGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCG
TAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAG
AGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACC
ACCTGCACATTCTGTGGAGAGCGACCCACATTGCCCCACCACATGGGCTG
TGGTCATATTTATTGCTATTACTGCCTTAATGCAAATGTTTTAACGGATG
CCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTCGGGAAAT
CAAAGTGTCTGAAAGCTTTCTAGACC
BS06353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7081-PA | 846 | CG7081-RA | 1..846 | 17..862 | 4180 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 1051 | CG7081-RA | 105..950 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8339390..8339822 | 131..563 | 2165 | 100 | Plus |
3L | 28110227 | 3L | 8339875..8340175 | 562..862 | 1475 | 99.3 | Plus |
3L | 28110227 | 3L | 8339255..8339334 | 51..130 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:54:37 has no hits.
BS06353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:26 Download gff for
BS06353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:42 Download gff for
BS06353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:58 Download gff for
BS06353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..950 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:27:28 Download gff for
BS06353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..950 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:27:28 Download gff for
BS06353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8339155..8339190 | 17..52 | 100 | -> | Plus |
3L | 8339257..8339334 | 53..130 | 100 | -> | Plus |
3L | 8339390..8339821 | 131..562 | 100 | -> | Plus |
3L | 8339876..8340175 | 563..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:58 Download gff for
BS06353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8332255..8332290 | 17..52 | 100 | -> | Plus |
arm_3L | 8332357..8332434 | 53..130 | 100 | -> | Plus |
arm_3L | 8332490..8332921 | 131..562 | 100 | -> | Plus |
arm_3L | 8332976..8333275 | 563..862 | 99 | | Plus |
BS06353.complete Sequence
878 bp (878 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635455
> BS06353.complete
GAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATC
AGATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGAT
AATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAAT
CCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCG
TCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTAC
GATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGAC
CGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGC
GCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTG
ATACTGAACATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACC
CACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACA
ATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGG
GGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCG
TAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAG
AGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACC
ACCTGCACATTCTGTGGAGAGCGACCCACATTGCCCCACCACATGGGCTG
TGGTCATATTTATTGCTATTACTGCCTTAATGCAAATGTTTTAACGGATG
CCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTCGGGAATC
CAAAGTGTCTGAAAGCTTTCTAGACCAT
BS06353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 846 | CG7081-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 1051 | CG7081-RA | 105..950 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8339390..8339822 | 131..563 | 2165 | 100 | Plus |
3L | 28110227 | 3L | 8339875..8340175 | 562..862 | 1505 | 100 | Plus |
3L | 28110227 | 3L | 8339255..8339334 | 51..130 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:12 has no hits.
BS06353.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:04 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-RA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:31 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-RA | 103..948 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:26 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..949 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:04 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-RA | 103..948 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:25 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..949 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:25 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8339155..8339190 | 17..52 | 100 | -> | Plus |
3L | 8339257..8339334 | 53..130 | 100 | -> | Plus |
3L | 8339390..8339821 | 131..562 | 100 | -> | Plus |
3L | 8339876..8340174 | 563..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:26 Download gff for
BS06353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8332255..8332290 | 17..52 | 100 | -> | Plus |
arm_3L | 8332357..8332434 | 53..130 | 100 | -> | Plus |
arm_3L | 8332490..8332921 | 131..562 | 100 | -> | Plus |
arm_3L | 8332976..8333274 | 563..861 | 100 | | Plus |
BS06353.pep Sequence
Translation from 16 to 861
> BS06353.pep
MEKNKYVPRVNQIDAIYLNKDIARLIRDNLLENLQAISPVLFIKIQPELD
LIIQSAIWFGSVGKRCSTFGQQLLVLAYDAEKLTVSRLVLHFILTVLPGY
VKSWEERRLTRRVEWFSEAIMWVENSALILNILNYFRFLKTGRKPTLVDY
LLGLDYISLRNNQRRDIGYKYLTRELLWGGFMEILGLVLPIINFRKLQRV
LKSWTFSGRRLEDRDGPAFLAPQMTLSTTCTFCGERPTLPHHMGCGHIYC
YYCLNANVLTDASFCCPNCGSACPESGIQSV*
BS06353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-PA | 281 | CG7081-PA | 1..281 | 1..281 | 1490 | 100 | Plus |