Clone Sequence Records
BS06354.5prime Sequence
435 bp (434 high quality bases) assembled on 2005-12-03
> BS06354.5prime
GAAGTTATCAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCG
CCTTGATGAGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATC
GCCATCATCAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTA
TGCCTATGAGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGA
AGAAGGCCACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCG
GTGTCGTACACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGC
CGATGATGAGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGC
CACCAATCCCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTG
CCACCGGCAAAGCGTCGTTAGAAGCTTTCTAGACC
BS06354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8505-PA | 405 | CG8505-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
CG32405-PA | 336 | CG32405-RA | 289..327 | 305..343 | 170 | 97.4 | Plus |
CG30045-PA | 993 | CG30045-RA | 751..812 | 317..378 | 160 | 90.3 | Plus |
CG12330-PA | 720 | CG12330-RA | 547..590 | 311..354 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..511 | 17..421 | 2025 | 100 | Plus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 308..378 | 235 | 88.7 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 305..343 | 180 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404433 | 154..421 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 12403381..12403508 | 26..153 | 640 | 100 | Plus |
2R | 25286936 | 2R | 12377158..12377228 | 308..378 | 235 | 88.7 | Plus |
3L | 28110227 | 3L | 6139425..6139463 | 343..305 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:13:08 has no hits.
BS06354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:28 Download gff for
BS06354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:45 Download gff for
BS06354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:07 Download gff for
BS06354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..514 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:49 Download gff for
BS06354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..514 | 17..424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:49 Download gff for
BS06354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12404166..12404436 | 154..424 | 99 | | Plus |
2R | 12403381..12403508 | 22..153 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:07 Download gff for
BS06354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 22..153 | 96 | -> | Plus |
arm_2R | 8291671..8291941 | 154..424 | 99 | | Plus |
BS06354.3prime Sequence
435 bp (434 high quality bases) assembled on 2005-12-03
> BS06354.3prime
ATGGTCTAGAAAGCTTCTAACGACGCTTTGCCGGTGGCAGGCTGAGCAGG
TAGTCAAGGGCCTTCTGGATCGCTGGCGGGATTGGTGGCGGAGTGGGCAG
ATGATCGCCCTGCGGCTGGAAACCGTTCTCATCATCGGCGGAGTAGTTCA
GTGTGATCAGGTTACCCTCGGGCGAGGTGTACGACACCGATCCCCTGGCG
ATGATCACGTCACTGGAGTCTGGCGAAGTGGCCTTCTTCAGGGTTCCGGT
CTCCTCAGCTTTGATTCCATTGGCCGTCTCATAGGCATAGTTGTAGGATC
CATCTGGCTCAATGTTGGACTCCTGGCTGATGATGGCGATGGGCTCCTCC
GCCTTTTGGGGGGCAGCCTGGCAGCAGCTCATCAAGGCGGTGGCCAGCAG
ACAGAGAGCAAAGTTCTTCATGTCGACTGATAACT
BS06354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8505-PA | 405 | CG8505-RA | 1..405 | 421..17 | 2025 | 100 | Minus |
CG32405-PA | 336 | CG32405-RA | 289..327 | 133..95 | 170 | 97.4 | Minus |
CG30045-PA | 993 | CG30045-RA | 751..812 | 121..60 | 160 | 90.3 | Minus |
CG12330-PA | 720 | CG12330-RA | 547..590 | 127..84 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..511 | 421..17 | 2025 | 100 | Minus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 130..60 | 235 | 88.7 | Minus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 133..95 | 180 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404433 | 284..17 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 12403381..12403508 | 412..285 | 640 | 100 | Minus |
2R | 25286936 | 2R | 12377158..12377228 | 130..60 | 235 | 88.7 | Minus |
3L | 28110227 | 3L | 6139425..6139463 | 95..133 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:42:58 has no hits.
BS06354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:27 Download gff for
BS06354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:44 Download gff for
BS06354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:04 Download gff for
BS06354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..514 | 14..421 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:51 Download gff for
BS06354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..514 | 14..421 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:51 Download gff for
BS06354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12403381..12403508 | 285..416 | 96 | -> | Minus |
2R | 12404166..12404436 | 14..284 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:04 Download gff for
BS06354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 285..416 | 96 | -> | Minus |
arm_2R | 8291671..8291941 | 14..284 | 99 | | Minus |
BS06354.complete Sequence
437 bp (437 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635456
> BS06354.complete
GAAGTTATCAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCG
CCTTGATGAGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATC
GCCATCATCAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTA
TGCCTATGAGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGA
AGAAGGCCACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCG
GTGTCGTACACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGC
CGATGATGAGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGC
CACCAATCCCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTG
CCACCGGCAAAGCGTCGTTAGAAGCTTTCTAGACCAT
BS06354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 405 | CG8505-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Cpr49Aa-RB | 435 | CG30045-PB | 292..362 | 308..378 | 235 | 88.7 | Plus |
Cpr65Av-RA | 336 | CG32405-PA | 289..327 | 305..343 | 180 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..511 | 17..421 | 2025 | 100 | Plus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 308..378 | 235 | 88.7 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 305..343 | 180 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404433 | 154..421 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 12403381..12403508 | 26..153 | 640 | 100 | Plus |
2R | 25286936 | 2R | 12377158..12377228 | 308..378 | 235 | 88.7 | Plus |
3L | 28110227 | 3L | 6139425..6139463 | 343..305 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:21:57 has no hits.
BS06354.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:09 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:33 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 108..515 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:48 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..511 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:09 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 108..515 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:53 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..511 | 17..421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:53 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12403381..12403508 | 26..153 | 100 | -> | Plus |
2R | 12404166..12404433 | 154..421 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:48 Download gff for
BS06354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 26..153 | 100 | -> | Plus |
arm_2R | 8291671..8291938 | 154..421 | 100 | | Plus |
BS06354.pep Sequence
Translation from 16 to 420
> BS06354.pep
MKNFALCLLATALMSCCQAAPQKAEEPIAIISQESNIEPDGSYNYAYETA
NGIKAEETGTLKKATSPDSSDVIIARGSVSYTSPEGNLITLNYSADDENG
FQPQGDHLPTPPPIPPAIQKALDYLLSLPPAKRR*
BS06354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-PA | 134 | CG8505-PA | 1..134 | 1..134 | 696 | 100 | Plus |
Cpr49Aa-PB | 144 | CG30045-PB | 3..130 | 4..130 | 347 | 58 | Plus |
Cpr65Az-PA | 239 | CG12330-PA | 112..209 | 26..125 | 296 | 64 | Plus |
Cpr67Fa1-PA | 134 | CG7941-PA | 2..117 | 4..129 | 251 | 44.1 | Plus |
Cpr78Cc-PA | 119 | CG7658-PA | 1..117 | 1..130 | 250 | 44.7 | Plus |