Clone BS06354 Report

Search the DGRC for BS06354

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCpr49Ae-RA
Protein status:BS06354.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06354.5prime Sequence

435 bp (434 high quality bases) assembled on 2005-12-03

> BS06354.5prime
GAAGTTATCAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCG
CCTTGATGAGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATC
GCCATCATCAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTA
TGCCTATGAGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGA
AGAAGGCCACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCG
GTGTCGTACACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGC
CGATGATGAGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGC
CACCAATCCCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTG
CCACCGGCAAAGCGTCGTTAGAAGCTTTCTAGACC

BS06354.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8505-PA 405 CG8505-RA 1..405 17..421 2025 100 Plus
CG32405-PA 336 CG32405-RA 289..327 305..343 170 97.4 Plus
CG30045-PA 993 CG30045-RA 751..812 317..378 160 90.3 Plus
CG12330-PA 720 CG12330-RA 547..590 311..354 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ae-RA 1186 CG8505-RA 107..511 17..421 2025 100 Plus
Cpr49Aa-RB 584 CG30045-RB 364..434 308..378 235 88.7 Plus
Cpr65Av-RA 642 CG32405-RA 402..440 305..343 180 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12404166..12404433 154..421 1340 100 Plus
2R 25286936 2R 12403381..12403508 26..153 640 100 Plus
2R 25286936 2R 12377158..12377228 308..378 235 88.7 Plus
3L 28110227 3L 6139425..6139463 343..305 180 97.4 Minus
Blast to na_te.dros performed on 2015-02-13 01:13:08 has no hits.

BS06354.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:28 Download gff for BS06354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8505-PA 1..405 17..421 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:45 Download gff for BS06354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8505-PA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:07 Download gff for BS06354.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 107..514 17..424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:49 Download gff for BS06354.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 107..514 17..424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:49 Download gff for BS06354.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12404166..12404436 154..424 99   Plus
2R 12403381..12403508 22..153 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:07 Download gff for BS06354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8290886..8291013 22..153 96 -> Plus
arm_2R 8291671..8291941 154..424 99   Plus

BS06354.3prime Sequence

435 bp (434 high quality bases) assembled on 2005-12-03

> BS06354.3prime
ATGGTCTAGAAAGCTTCTAACGACGCTTTGCCGGTGGCAGGCTGAGCAGG
TAGTCAAGGGCCTTCTGGATCGCTGGCGGGATTGGTGGCGGAGTGGGCAG
ATGATCGCCCTGCGGCTGGAAACCGTTCTCATCATCGGCGGAGTAGTTCA
GTGTGATCAGGTTACCCTCGGGCGAGGTGTACGACACCGATCCCCTGGCG
ATGATCACGTCACTGGAGTCTGGCGAAGTGGCCTTCTTCAGGGTTCCGGT
CTCCTCAGCTTTGATTCCATTGGCCGTCTCATAGGCATAGTTGTAGGATC
CATCTGGCTCAATGTTGGACTCCTGGCTGATGATGGCGATGGGCTCCTCC
GCCTTTTGGGGGGCAGCCTGGCAGCAGCTCATCAAGGCGGTGGCCAGCAG
ACAGAGAGCAAAGTTCTTCATGTCGACTGATAACT

BS06354.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8505-PA 405 CG8505-RA 1..405 421..17 2025 100 Minus
CG32405-PA 336 CG32405-RA 289..327 133..95 170 97.4 Minus
CG30045-PA 993 CG30045-RA 751..812 121..60 160 90.3 Minus
CG12330-PA 720 CG12330-RA 547..590 127..84 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ae-RA 1186 CG8505-RA 107..511 421..17 2025 100 Minus
Cpr49Aa-RB 584 CG30045-RB 364..434 130..60 235 88.7 Minus
Cpr65Av-RA 642 CG32405-RA 402..440 133..95 180 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12404166..12404433 284..17 1340 100 Minus
2R 25286936 2R 12403381..12403508 412..285 640 100 Minus
2R 25286936 2R 12377158..12377228 130..60 235 88.7 Minus
3L 28110227 3L 6139425..6139463 95..133 180 97.4 Plus
Blast to na_te.dros performed on 2015-02-06 12:42:58 has no hits.

BS06354.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:27 Download gff for BS06354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8505-PA 1..405 17..421 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:44 Download gff for BS06354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8505-PA 1..405 17..421 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:04 Download gff for BS06354.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 107..514 14..421 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:51 Download gff for BS06354.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 107..514 14..421 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:51 Download gff for BS06354.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12403381..12403508 285..416 96 -> Minus
2R 12404166..12404436 14..284 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:04 Download gff for BS06354.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8290886..8291013 285..416 96 -> Minus
arm_2R 8291671..8291941 14..284 99   Minus

BS06354.complete Sequence

437 bp (437 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635456

> BS06354.complete
GAAGTTATCAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCG
CCTTGATGAGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATC
GCCATCATCAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTA
TGCCTATGAGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGA
AGAAGGCCACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCG
GTGTCGTACACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGC
CGATGATGAGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGC
CACCAATCCCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTG
CCACCGGCAAAGCGTCGTTAGAAGCTTTCTAGACCAT

BS06354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ae-RA 405 CG8505-PA 1..405 17..421 2025 100 Plus
Cpr49Aa-RB 435 CG30045-PB 292..362 308..378 235 88.7 Plus
Cpr65Av-RA 336 CG32405-PA 289..327 305..343 180 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ae-RA 1186 CG8505-RA 107..511 17..421 2025 100 Plus
Cpr49Aa-RB 584 CG30045-RB 364..434 308..378 235 88.7 Plus
Cpr65Av-RA 642 CG32405-RA 402..440 305..343 180 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12404166..12404433 154..421 1340 100 Plus
2R 25286936 2R 12403381..12403508 26..153 640 100 Plus
2R 25286936 2R 12377158..12377228 308..378 235 88.7 Plus
3L 28110227 3L 6139425..6139463 343..305 180 97.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:21:57 has no hits.

BS06354.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:09 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:33 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 108..515 17..424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:48 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 107..511 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:09 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 108..515 17..424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:53 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ae-RA 107..511 17..421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:53 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12403381..12403508 26..153 100 -> Plus
2R 12404166..12404433 154..421 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:48 Download gff for BS06354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8290886..8291013 26..153 100 -> Plus
arm_2R 8291671..8291938 154..421 100   Plus

BS06354.pep Sequence

Translation from 16 to 420

> BS06354.pep
MKNFALCLLATALMSCCQAAPQKAEEPIAIISQESNIEPDGSYNYAYETA
NGIKAEETGTLKKATSPDSSDVIIARGSVSYTSPEGNLITLNYSADDENG
FQPQGDHLPTPPPIPPAIQKALDYLLSLPPAKRR*

BS06354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ae-PA 134 CG8505-PA 1..134 1..134 696 100 Plus
Cpr49Aa-PB 144 CG30045-PB 3..130 4..130 347 58 Plus
Cpr65Az-PA 239 CG12330-PA 112..209 26..125 296 64 Plus
Cpr67Fa1-PA 134 CG7941-PA 2..117 4..129 251 44.1 Plus
Cpr78Cc-PA 119 CG7658-PA 1..117 1..130 250 44.7 Plus