Clone BS06358 Report

Search the DGRC for BS06358

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptGem2-RA
Protein status:BS06358.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06358.3prime Sequence

768 bp (767 high quality bases) assembled on 2005-12-03

> BS06358.3prime
ATGGTCTAGAAAGCTTCTATATGTAATCCTTGAAATCATTCTGTGCGAAA
ACCTGAACGGTGAGCGTTAGTAGTAGGTTGTAGGGAGCTGCCCGTTGCAC
TTCGTCCTCCTTAAGTTGATTTCTCAGATGGATGCAGGTTCGGGCGATGT
ATCGAAGGGTGCTGAACACGTGAGGTTCCAGTGGAAGGTGGAGGCAGACC
AAGGTGGCATACAGCCAGCGAGCCAGCCAGACATCGTGGAGAAGGTCTAC
CGTGGTGTTGGGATCCTGCAGCCACTTGCTGAGCATTTCCAGCAAGAGCT
CCAAGTCGTTTTGGGTCAAATGGAGCAGGGTGCTCAGGAGGGGCTGCTGA
TTCCGGCAGAATTCCTTCCATTTCTCCTGGTCGGAAGTCAAAGGTGGTTC
CCCGGACTGGTCGTAGTTGTTGTTGGCCAACTCCTTACGAAGAACTAGGA
CCTGGGAGCGGGCTGCTTGGAAGGATTTAACTTGCTCATCCCGCCATTCG
GGCGTGGGCAGCAGGCACTTGAACGGAGGCAACTCGGGATTGTCCAACAT
CTCTAAAGTGGTATTTCCCGTGTTATTCCTGATTTTGGATGATCTTTTGG
TCACCACAGCTGGACATCGCTTCCTCTCGTAGAACATGTGCATTAGGTAC
TCTTCCCCGGACTCTGGCGGCTTCTGGGGGTCAAAACTGCTATCCGGCTC
ACAGATCTCCAGTGCCTGGAGTTGAAAAGTCTGATCTTCGGGCTCATGCT
GCATGTCGACTGATAACT

BS06358.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10419-PA 738 CG10419-RA 1..738 754..17 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 1123 CG10419-RB 26..765 756..17 3700 100 Minus
Gem2-RA 1182 CG10419-RA 85..824 756..17 3700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19099481..19100002 17..538 2610 100 Plus
3L 28110227 3L 19100054..19100271 539..756 1090 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:48:51 has no hits.

BS06358.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:35 Download gff for BS06358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:55 Download gff for BS06358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:18 Download gff for BS06358.3prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..829 9..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:02 Download gff for BS06358.3prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..829 9..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:02 Download gff for BS06358.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19099476..19100002 9..538 99 <- Plus
3L 19100054..19100275 539..760 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:18 Download gff for BS06358.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19092576..19093102 9..538 99 <- Plus
arm_3L 19093154..19093375 539..760 99   Plus

BS06358.5prime Sequence

768 bp (767 high quality bases) assembled on 2005-12-03

> BS06358.5prime
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
ATAGAAGCTTTCTAGACC

BS06358.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10419-PA 738 CG10419-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 1123 CG10419-RB 26..765 15..754 3700 100 Plus
Gem2-RA 1182 CG10419-RA 85..824 15..754 3700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19099481..19100002 754..233 2610 100 Minus
3L 28110227 3L 19100054..19100271 232..15 1090 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:09:18 has no hits.

BS06358.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:36 Download gff for BS06358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:56 Download gff for BS06358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:34 Download gff for BS06358.5prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..829 11..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:08 Download gff for BS06358.5prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..829 11..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:08 Download gff for BS06358.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19100054..19100275 11..232 99   Minus
3L 19099476..19100002 233..762 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:34 Download gff for BS06358.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19092576..19093102 233..762 99 <- Minus
arm_3L 19093154..19093375 11..232 99   Minus

BS06358.complete Sequence

770 bp (770 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635457

> BS06358.complete
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
ATAGAAGCTTTCTAGACCAT

BS06358.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 738 CG10419-PB 1..738 17..754 3690 100 Plus
Gem2-RA 738 CG10419-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 1123 CG10419-RB 26..765 15..754 3700 100 Plus
Gem2-RA 1182 CG10419-RA 85..824 15..754 3700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19099481..19100002 754..233 2610 100 Minus
3L 28110227 3L 19100054..19100271 232..15 1090 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:39:12 has no hits.

BS06358.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:20 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10419-RA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:47 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10419-RA 60..808 11..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:03 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 87..824 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:20 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10419-RA 60..808 11..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:43 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 87..824 17..754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:43 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19099481..19100002 233..754 100 <- Minus
3L 19100054..19100269 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:03 Download gff for BS06358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19092581..19093102 233..754 100 <- Minus
arm_3L 19093154..19093369 17..232 100   Minus

BS06358.pep Sequence

Translation from 16 to 753

> BS06358.pep
MQHEPEDQTFQLQALEICEPDSSFDPQKPPESGEEYLMHMFYERKRCPAV
VTKRSSKIRNNTGNTTLEMLDNPELPPFKCLLPTPEWRDEQVKSFQAARS
QVLVLRKELANNNYDQSGEPPLTSDQEKWKEFCRNQQPLLSTLLHLTQND
LELLLEMLSKWLQDPNTTVDLLHDVWLARWLYATLVCLHLPLEPHVFSTL
RYIARTCIHLRNQLKEDEVQRAAPYNLLLTLTVQVFAQNDFKDYI*

BS06358.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-PB 245 CG10419-PB 1..245 1..245 1311 100 Plus
Gem2-PA 245 CG10419-PA 1..245 1..245 1311 100 Plus