Clone Sequence Records
BS06358.3prime Sequence
768 bp (767 high quality bases) assembled on 2005-12-03
> BS06358.3prime
ATGGTCTAGAAAGCTTCTATATGTAATCCTTGAAATCATTCTGTGCGAAA
ACCTGAACGGTGAGCGTTAGTAGTAGGTTGTAGGGAGCTGCCCGTTGCAC
TTCGTCCTCCTTAAGTTGATTTCTCAGATGGATGCAGGTTCGGGCGATGT
ATCGAAGGGTGCTGAACACGTGAGGTTCCAGTGGAAGGTGGAGGCAGACC
AAGGTGGCATACAGCCAGCGAGCCAGCCAGACATCGTGGAGAAGGTCTAC
CGTGGTGTTGGGATCCTGCAGCCACTTGCTGAGCATTTCCAGCAAGAGCT
CCAAGTCGTTTTGGGTCAAATGGAGCAGGGTGCTCAGGAGGGGCTGCTGA
TTCCGGCAGAATTCCTTCCATTTCTCCTGGTCGGAAGTCAAAGGTGGTTC
CCCGGACTGGTCGTAGTTGTTGTTGGCCAACTCCTTACGAAGAACTAGGA
CCTGGGAGCGGGCTGCTTGGAAGGATTTAACTTGCTCATCCCGCCATTCG
GGCGTGGGCAGCAGGCACTTGAACGGAGGCAACTCGGGATTGTCCAACAT
CTCTAAAGTGGTATTTCCCGTGTTATTCCTGATTTTGGATGATCTTTTGG
TCACCACAGCTGGACATCGCTTCCTCTCGTAGAACATGTGCATTAGGTAC
TCTTCCCCGGACTCTGGCGGCTTCTGGGGGTCAAAACTGCTATCCGGCTC
ACAGATCTCCAGTGCCTGGAGTTGAAAAGTCTGATCTTCGGGCTCATGCT
GCATGTCGACTGATAACT
BS06358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10419-PA | 738 | CG10419-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 1123 | CG10419-RB | 26..765 | 756..17 | 3700 | 100 | Minus |
Gem2-RA | 1182 | CG10419-RA | 85..824 | 756..17 | 3700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19099481..19100002 | 17..538 | 2610 | 100 | Plus |
3L | 28110227 | 3L | 19100054..19100271 | 539..756 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:48:51 has no hits.
BS06358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:35 Download gff for
BS06358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:55 Download gff for
BS06358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:18 Download gff for
BS06358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..829 | 9..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:02 Download gff for
BS06358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..829 | 9..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:02 Download gff for
BS06358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19099476..19100002 | 9..538 | 99 | <- | Plus |
3L | 19100054..19100275 | 539..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:18 Download gff for
BS06358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19092576..19093102 | 9..538 | 99 | <- | Plus |
arm_3L | 19093154..19093375 | 539..760 | 99 | | Plus |
BS06358.5prime Sequence
768 bp (767 high quality bases) assembled on 2005-12-03
> BS06358.5prime
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
ATAGAAGCTTTCTAGACC
BS06358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10419-PA | 738 | CG10419-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 1123 | CG10419-RB | 26..765 | 15..754 | 3700 | 100 | Plus |
Gem2-RA | 1182 | CG10419-RA | 85..824 | 15..754 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19099481..19100002 | 754..233 | 2610 | 100 | Minus |
3L | 28110227 | 3L | 19100054..19100271 | 232..15 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:09:18 has no hits.
BS06358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:36 Download gff for
BS06358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:56 Download gff for
BS06358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:34 Download gff for
BS06358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..829 | 11..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:08 Download gff for
BS06358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..829 | 11..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:08 Download gff for
BS06358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19100054..19100275 | 11..232 | 99 | | Minus |
3L | 19099476..19100002 | 233..762 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:34 Download gff for
BS06358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19092576..19093102 | 233..762 | 99 | <- | Minus |
arm_3L | 19093154..19093375 | 11..232 | 99 | | Minus |
BS06358.complete Sequence
770 bp (770 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635457
> BS06358.complete
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
ATAGAAGCTTTCTAGACCAT
BS06358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 738 | CG10419-PB | 1..738 | 17..754 | 3690 | 100 | Plus |
Gem2-RA | 738 | CG10419-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 1123 | CG10419-RB | 26..765 | 15..754 | 3700 | 100 | Plus |
Gem2-RA | 1182 | CG10419-RA | 85..824 | 15..754 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19099481..19100002 | 754..233 | 2610 | 100 | Minus |
3L | 28110227 | 3L | 19100054..19100271 | 232..15 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:12 has no hits.
BS06358.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:20 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:47 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-RA | 60..808 | 11..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:03 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 87..824 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:20 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-RA | 60..808 | 11..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:43 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 87..824 | 17..754 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:43 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19099481..19100002 | 233..754 | 100 | <- | Minus |
3L | 19100054..19100269 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:03 Download gff for
BS06358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19092581..19093102 | 233..754 | 100 | <- | Minus |
arm_3L | 19093154..19093369 | 17..232 | 100 | | Minus |
BS06358.pep Sequence
Translation from 16 to 753
> BS06358.pep
MQHEPEDQTFQLQALEICEPDSSFDPQKPPESGEEYLMHMFYERKRCPAV
VTKRSSKIRNNTGNTTLEMLDNPELPPFKCLLPTPEWRDEQVKSFQAARS
QVLVLRKELANNNYDQSGEPPLTSDQEKWKEFCRNQQPLLSTLLHLTQND
LELLLEMLSKWLQDPNTTVDLLHDVWLARWLYATLVCLHLPLEPHVFSTL
RYIARTCIHLRNQLKEDEVQRAAPYNLLLTLTVQVFAQNDFKDYI*
BS06358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-PB | 245 | CG10419-PB | 1..245 | 1..245 | 1311 | 100 | Plus |
Gem2-PA | 245 | CG10419-PA | 1..245 | 1..245 | 1311 | 100 | Plus |