Clone Sequence Records
BS06359.3prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-03
> BS06359.3prime
ATGGTCTAGAAAGCTTTTAGTAGAAGGAGCGGATAAACCAAAGACCCAGC
AGGGAGCTAAGGATGGCGCTTACGCTGGCCAAAGATGGAGTCGATGCTCC
GTTGTGCTGGTTGCAGATGCGCGGCTGCGGGGCGGATACGTATTGGCAGA
TGGTGCCCACCAAGTTCACCTGGGCGCGATCATTCACCTTCTTGTCGAAT
TGCTCATTGAACAGAATGGTGGGCACGCTGGTGAGTGGCTCCTTGAGCCG
CATGGTGCTTTCGCCGGCCTTCCGGAGCAGAACGCTTCCCTCGGTGGAGT
TGGCACAGGTCTTGATGTTCTCCCAGTTATTGATGTGGTTCTCCGAGGCG
CATCGCTGGCCGGGATAGACGTTGTCCGGGAAATTCTTGCCGGCCTTCAT
TAGGCAGTTGATGAAGTCCATCGTGAGCGACTCGCGCGTGTACTCCACCT
GATAGGAGTTGGCCTGAATGTGCTCGATGGCGCAGGCATGCACCTTATTG
CCATAGCACTCGTTCGGTCCGTGGTGGCAGGTGAACGTCACTTCGGAGCC
CTGGGTAACGAACTGAGACTTTCCGAATGGCACGAAAGTGAGTTCCACCA
CATCGCGCAGTTCTCCCTTCACCGCCGGATATACCTGCTCCGTAATGAAC
TTGGCGCTGTCCGGGCACAGGGACTCGTAGTAGATAGAAATTGGCACCTT
AGCGGCACTATAAGCCGTGGCAATCAGGCAGCTCATCAAGAGGCACACAG
CGGCGATTTTGTGACTCATGTCGACTGATAACT
BS06359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9796-PA | 753 | CG9796-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 1122 | CG9796-RA | 113..865 | 769..17 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13399073..13399435 | 203..565 | 1815 | 100 | Plus |
3R | 32079331 | 3R | 13398783..13398970 | 17..204 | 940 | 100 | Plus |
3R | 32079331 | 3R | 13399510..13399646 | 563..699 | 685 | 100 | Plus |
3R | 32079331 | 3R | 13401676..13401750 | 695..769 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:43:10 has no hits.
BS06359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:37 Download gff for
BS06359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:57 Download gff for
BS06359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:05 Download gff for
BS06359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 113..868 | 12..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:52 Download gff for
BS06359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT1-RA | 113..868 | 12..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:52 Download gff for
BS06359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13401679..13401750 | 698..769 | 100 | | Plus |
3R | 13398780..13398968 | 12..202 | 98 | <- | Plus |
3R | 13399073..13399432 | 203..562 | 100 | <- | Plus |
3R | 13399510..13399644 | 563..697 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:05 Download gff for
BS06359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9224502..9224690 | 12..202 | 98 | <- | Plus |
arm_3R | 9224795..9225154 | 203..562 | 100 | <- | Plus |
arm_3R | 9225232..9225366 | 563..697 | 100 | <- | Plus |
arm_3R | 9227401..9227472 | 698..769 | 100 | | Plus |
BS06359.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-03
> BS06359.5prime
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACTAAAAGCTTTCTAGACC
BS06359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9796-PA | 753 | CG9796-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 1122 | CG9796-RA | 113..865 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13399073..13399435 | 583..221 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 13398783..13398970 | 769..582 | 940 | 100 | Minus |
3R | 32079331 | 3R | 13399510..13399646 | 223..87 | 685 | 100 | Minus |
3R | 32079331 | 3R | 13401676..13401750 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:26:18 has no hits.
BS06359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:38 Download gff for
BS06359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:58 Download gff for
BS06359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:00 Download gff for
BS06359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 113..868 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:49 Download gff for
BS06359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT1-RA | 113..868 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:49 Download gff for
BS06359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13401679..13401750 | 17..88 | 100 | | Minus |
3R | 13398780..13398968 | 584..774 | 98 | <- | Minus |
3R | 13399073..13399432 | 224..583 | 100 | <- | Minus |
3R | 13399510..13399644 | 89..223 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:00 Download gff for
BS06359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9224502..9224690 | 584..774 | 98 | <- | Minus |
arm_3R | 9224795..9225154 | 224..583 | 100 | <- | Minus |
arm_3R | 9225232..9225366 | 89..223 | 100 | <- | Minus |
arm_3R | 9227401..9227472 | 17..88 | 100 | | Minus |
BS06359.complete Sequence
785 bp (785 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635458
> BS06359.complete
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACTAAAAGCTTTCTAGACCAT
BS06359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 753 | CG9796-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 1122 | CG9796-RA | 113..865 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13399073..13399435 | 583..221 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 13398783..13398970 | 769..582 | 940 | 100 | Minus |
3R | 32079331 | 3R | 13399510..13399646 | 223..87 | 685 | 100 | Minus |
3R | 32079331 | 3R | 13401676..13401750 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:37:57 has no hits.
BS06359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:10 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:35 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 109..864 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:22:58 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 113..863 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:10 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 109..864 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:54 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT1-RA | 113..863 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:54 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13399073..13399432 | 224..583 | 100 | <- | Minus |
3R | 13399510..13399644 | 89..223 | 100 | <- | Minus |
3R | 13401679..13401750 | 17..88 | 100 | | Minus |
3R | 13398785..13398968 | 584..767 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:22:58 Download gff for
BS06359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9224507..9224690 | 584..767 | 100 | <- | Minus |
arm_3R | 9224795..9225154 | 224..583 | 100 | <- | Minus |
arm_3R | 9225232..9225366 | 89..223 | 100 | <- | Minus |
arm_3R | 9227401..9227472 | 17..88 | 100 | | Minus |
BS06359.pep Sequence
Translation from 16 to 768
> BS06359.pep
MSHKIAAVCLLMSCLIATAYSAAKVPISIYYESLCPDSAKFITEQVYPAV
KGELRDVVELTFVPFGKSQFVTQGSEVTFTCHHGPNECYGNKVHACAIEH
IQANSYQVEYTRESLTMDFINCLMKAGKNFPDNVYPGQRCASENHINNWE
NIKTCANSTEGSVLLRKAGESTMRLKEPLTSVPTILFNEQFDKKVNDRAQ
VNLVGTICQYVSAPQPRICNQHNGASTPSLASVSAILSSLLGLWFIRSFY
*
BS06359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-PA | 250 | CG9796-PA | 1..250 | 1..250 | 1320 | 100 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..160 | 24..185 | 243 | 34.5 | Plus |
CG41378-PD | 205 | CG41378-PD | 22..169 | 24..185 | 243 | 34.5 | Plus |
CG41378-PB | 228 | CG41378-PB | 45..192 | 24..185 | 243 | 34.5 | Plus |
CG9427-PA | 213 | CG9427-PA | 34..196 | 24..208 | 212 | 33.5 | Plus |