Clone BS06359 Report

Search the DGRC for BS06359

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptGILT1-RA
Protein status:BS06359.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06359.3prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-03

> BS06359.3prime
ATGGTCTAGAAAGCTTTTAGTAGAAGGAGCGGATAAACCAAAGACCCAGC
AGGGAGCTAAGGATGGCGCTTACGCTGGCCAAAGATGGAGTCGATGCTCC
GTTGTGCTGGTTGCAGATGCGCGGCTGCGGGGCGGATACGTATTGGCAGA
TGGTGCCCACCAAGTTCACCTGGGCGCGATCATTCACCTTCTTGTCGAAT
TGCTCATTGAACAGAATGGTGGGCACGCTGGTGAGTGGCTCCTTGAGCCG
CATGGTGCTTTCGCCGGCCTTCCGGAGCAGAACGCTTCCCTCGGTGGAGT
TGGCACAGGTCTTGATGTTCTCCCAGTTATTGATGTGGTTCTCCGAGGCG
CATCGCTGGCCGGGATAGACGTTGTCCGGGAAATTCTTGCCGGCCTTCAT
TAGGCAGTTGATGAAGTCCATCGTGAGCGACTCGCGCGTGTACTCCACCT
GATAGGAGTTGGCCTGAATGTGCTCGATGGCGCAGGCATGCACCTTATTG
CCATAGCACTCGTTCGGTCCGTGGTGGCAGGTGAACGTCACTTCGGAGCC
CTGGGTAACGAACTGAGACTTTCCGAATGGCACGAAAGTGAGTTCCACCA
CATCGCGCAGTTCTCCCTTCACCGCCGGATATACCTGCTCCGTAATGAAC
TTGGCGCTGTCCGGGCACAGGGACTCGTAGTAGATAGAAATTGGCACCTT
AGCGGCACTATAAGCCGTGGCAATCAGGCAGCTCATCAAGAGGCACACAG
CGGCGATTTTGTGACTCATGTCGACTGATAACT

BS06359.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9796-PA 753 CG9796-RA 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 1122 CG9796-RA 113..865 769..17 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13399073..13399435 203..565 1815 100 Plus
3R 32079331 3R 13398783..13398970 17..204 940 100 Plus
3R 32079331 3R 13399510..13399646 563..699 685 100 Plus
3R 32079331 3R 13401676..13401750 695..769 375 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:43:10 has no hits.

BS06359.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:37 Download gff for BS06359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:57 Download gff for BS06359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:05 Download gff for BS06359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 113..868 12..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:52 Download gff for BS06359.3prime
Subject Subject Range Query Range Percent Splice Strand
GILT1-RA 113..868 12..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:52 Download gff for BS06359.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13401679..13401750 698..769 100   Plus
3R 13398780..13398968 12..202 98 <- Plus
3R 13399073..13399432 203..562 100 <- Plus
3R 13399510..13399644 563..697 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:05 Download gff for BS06359.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9224502..9224690 12..202 98 <- Plus
arm_3R 9224795..9225154 203..562 100 <- Plus
arm_3R 9225232..9225366 563..697 100 <- Plus
arm_3R 9227401..9227472 698..769 100   Plus

BS06359.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-03

> BS06359.5prime
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACTAAAAGCTTTCTAGACC

BS06359.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9796-PA 753 CG9796-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 1122 CG9796-RA 113..865 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13399073..13399435 583..221 1815 100 Minus
3R 32079331 3R 13398783..13398970 769..582 940 100 Minus
3R 32079331 3R 13399510..13399646 223..87 685 100 Minus
3R 32079331 3R 13401676..13401750 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:26:18 has no hits.

BS06359.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:38 Download gff for BS06359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:16:58 Download gff for BS06359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:00 Download gff for BS06359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 113..868 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:49 Download gff for BS06359.5prime
Subject Subject Range Query Range Percent Splice Strand
GILT1-RA 113..868 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:49 Download gff for BS06359.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13401679..13401750 17..88 100   Minus
3R 13398780..13398968 584..774 98 <- Minus
3R 13399073..13399432 224..583 100 <- Minus
3R 13399510..13399644 89..223 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:00 Download gff for BS06359.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9224502..9224690 584..774 98 <- Minus
arm_3R 9224795..9225154 224..583 100 <- Minus
arm_3R 9225232..9225366 89..223 100 <- Minus
arm_3R 9227401..9227472 17..88 100   Minus

BS06359.complete Sequence

785 bp (785 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635458

> BS06359.complete
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACTAAAAGCTTTCTAGACCAT

BS06359.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 753 CG9796-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 1122 CG9796-RA 113..865 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13399073..13399435 583..221 1815 100 Minus
3R 32079331 3R 13398783..13398970 769..582 940 100 Minus
3R 32079331 3R 13399510..13399646 223..87 685 100 Minus
3R 32079331 3R 13401676..13401750 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:37:57 has no hits.

BS06359.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:10 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:35 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 109..864 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:22:58 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 113..863 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:10 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 109..864 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:54 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
GILT1-RA 113..863 17..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:54 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13399073..13399432 224..583 100 <- Minus
3R 13399510..13399644 89..223 100 <- Minus
3R 13401679..13401750 17..88 100   Minus
3R 13398785..13398968 584..767 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:22:58 Download gff for BS06359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9224507..9224690 584..767 100 <- Minus
arm_3R 9224795..9225154 224..583 100 <- Minus
arm_3R 9225232..9225366 89..223 100 <- Minus
arm_3R 9227401..9227472 17..88 100   Minus

BS06359.pep Sequence

Translation from 16 to 768

> BS06359.pep
MSHKIAAVCLLMSCLIATAYSAAKVPISIYYESLCPDSAKFITEQVYPAV
KGELRDVVELTFVPFGKSQFVTQGSEVTFTCHHGPNECYGNKVHACAIEH
IQANSYQVEYTRESLTMDFINCLMKAGKNFPDNVYPGQRCASENHINNWE
NIKTCANSTEGSVLLRKAGESTMRLKEPLTSVPTILFNEQFDKKVNDRAQ
VNLVGTICQYVSAPQPRICNQHNGASTPSLASVSAILSSLLGLWFIRSFY
*

BS06359.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-PA 250 CG9796-PA 1..250 1..250 1320 100 Plus
CG41378-PC 196 CG41378-PC 13..160 24..185 243 34.5 Plus
CG41378-PD 205 CG41378-PD 22..169 24..185 243 34.5 Plus
CG41378-PB 228 CG41378-PB 45..192 24..185 243 34.5 Plus
CG9427-PA 213 CG9427-PA 34..196 24..208 212 33.5 Plus