Clone Sequence Records
BS06360.3prime Sequence
690 bp (689 high quality bases) assembled on 2005-12-03
> BS06360.3prime
ATGGTCTAGAAAGCTTCTATATCTGCCGCTCATCCTTAGCCGTCAGCTTG
TCGATGAGCTCCTGCAGCGGGGCCAGTTCGCGCCGCTCAATCAGATTGAA
CTCCTGCACGAAGAAGATGAAGTGCTTGAAGGACGTGTTGAGATGGGCCT
CCTCGCCAAGCGTCACCACCTCTGTGAAGTGCTGGTGGTAGATGTGCGCA
TACACGCGGAACAGACGCTTCAGTATGGTCTTGGCGGAGGAGTGAAAGTT
CTTTGGAAACGGCACGCCGATCTTGGAGGGAAACAGGGTCTCGTCGTCCA
GCTGATCCTGCACCCAAGTCATCAGATAGTCAATATACTTGGGCGCGCTG
CACTTGATGGGCTTCTTTACGGTCAAACCGTCGGCCCAGTGGTACTCGTA
TTTCGGACCAGCCGACATGATGCCACAGGTCTCCTCGGTGCAGAACTCGG
TGATGGTGCCGTACAGCATGTTGATCTGGTTGAAAAAGTCCACGGTGTTA
ACGGCCACCCACTCGTTGAGATCCTCGCCATCTGGAAGGGCCACTGCATT
GCGCAGGTTTCCCGATCCCAGCGTGGCTGCCGCATGCTTCATGAGATCAT
ATTGGTGTGTGCCTTCCGGGATGTTCTTCTTGGGCTTGAAGGTCTTGCTG
GAACGGGAACCGAACAAGAAGTCCATGTCGACTGATAACT
BS06360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13852-PA | 660 | mats-RA | 1..660 | 676..17 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 1096 | CG13852-RC | 264..924 | 677..17 | 3305 | 100 | Minus |
mats-RB | 1716 | CG13852-RB | 428..1088 | 677..17 | 3305 | 100 | Minus |
mats-RA | 1260 | CG13852-RA | 428..1088 | 677..17 | 3305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22422196..22422674 | 495..17 | 2395 | 100 | Minus |
3R | 32079331 | 3R | 22421968..22422134 | 662..496 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:15:43 has no hits.
BS06360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:39 Download gff for
BS06360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-PA | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:00 Download gff for
BS06360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13852-PA | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:27 Download gff for
BS06360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1088 | 17..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:26 Download gff for
BS06360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1088 | 17..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:26 Download gff for
BS06360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22421968..22422134 | 496..662 | 100 | -> | Minus |
3R | 22422196..22422674 | 17..495 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:27 Download gff for
BS06360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18247690..18247856 | 496..662 | 100 | -> | Minus |
arm_3R | 18247918..18248396 | 17..495 | 100 | | Minus |
BS06360.5prime Sequence
690 bp (689 high quality bases) assembled on 2005-12-03
> BS06360.5prime
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATATAGAAGCTTTCTAGACC
BS06360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13852-PA | 660 | mats-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 1096 | CG13852-RC | 264..924 | 16..676 | 3305 | 100 | Plus |
mats-RB | 1716 | CG13852-RB | 428..1088 | 16..676 | 3305 | 100 | Plus |
mats-RA | 1260 | CG13852-RA | 428..1088 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22422196..22422674 | 198..676 | 2395 | 100 | Plus |
3R | 32079331 | 3R | 22421968..22422134 | 31..197 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:30:28 has no hits.
BS06360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:40 Download gff for
BS06360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:01 Download gff for
BS06360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13852-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:40 Download gff for
BS06360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1088 | 5..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:22 Download gff for
BS06360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1088 | 5..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:22 Download gff for
BS06360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22421968..22422134 | 31..197 | 100 | -> | Plus |
3R | 22422196..22422674 | 198..676 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:40 Download gff for
BS06360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18247690..18247856 | 31..197 | 100 | -> | Plus |
arm_3R | 18247918..18248396 | 198..676 | 100 | | Plus |
BS06360.complete Sequence
692 bp (692 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635459
> BS06360.complete
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATATAGAAGCTTTCTAGACCAT
BS06360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 660 | CG13852-PC | 1..660 | 17..676 | 3300 | 100 | Plus |
mats-RB | 660 | CG13852-PB | 1..660 | 17..676 | 3300 | 100 | Plus |
mats-RA | 660 | CG13852-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 1096 | CG13852-RC | 264..924 | 16..676 | 3305 | 100 | Plus |
mats-RB | 1716 | CG13852-RB | 428..1088 | 16..676 | 3305 | 100 | Plus |
mats-RA | 1260 | CG13852-RA | 428..1088 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22422196..22422674 | 198..676 | 2395 | 100 | Plus |
3R | 32079331 | 3R | 22421968..22422134 | 31..197 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:52:51 has no hits.
BS06360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:28 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:49 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 426..1094 | 5..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:08 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 429..1088 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:28 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 426..1094 | 5..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:02 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 429..1088 | 17..676 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:02 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22421968..22422134 | 31..197 | 100 | -> | Plus |
3R | 22422196..22422674 | 198..676 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:08 Download gff for
BS06360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18247690..18247856 | 31..197 | 100 | -> | Plus |
arm_3R | 18247918..18248396 | 198..676 | 100 | | Plus |
BS06360.pep Sequence
Translation from 16 to 675
> BS06360.pep
MDFLFGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVALPDG
EDLNEWVAVNTVDFFNQINMLYGTITEFCTEETCGIMSAGPKYEYHWADG
LTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFHSSAKT
ILKRLFRVYAHIYHQHFTEVVTLGEEAHLNTSFKHFIFFVQEFNLIERRE
LAPLQELIDKLTAKDERQI*
BS06360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-PC | 219 | CG13852-PC | 1..219 | 1..219 | 1169 | 100 | Plus |
mats-PB | 219 | CG13852-PB | 1..219 | 1..219 | 1169 | 100 | Plus |
mats-PA | 219 | CG13852-PA | 1..219 | 1..219 | 1169 | 100 | Plus |
Mob3-PA | 220 | CG4946-PA | 6..215 | 3..211 | 612 | 52.9 | Plus |
Mob2-PC | 431 | CG11711-PC | 31..209 | 36..216 | 360 | 40.3 | Plus |