Clone BS06360 Report

Search the DGRC for BS06360

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptmats-RA
Protein status:BS06360.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06360.3prime Sequence

690 bp (689 high quality bases) assembled on 2005-12-03

> BS06360.3prime
ATGGTCTAGAAAGCTTCTATATCTGCCGCTCATCCTTAGCCGTCAGCTTG
TCGATGAGCTCCTGCAGCGGGGCCAGTTCGCGCCGCTCAATCAGATTGAA
CTCCTGCACGAAGAAGATGAAGTGCTTGAAGGACGTGTTGAGATGGGCCT
CCTCGCCAAGCGTCACCACCTCTGTGAAGTGCTGGTGGTAGATGTGCGCA
TACACGCGGAACAGACGCTTCAGTATGGTCTTGGCGGAGGAGTGAAAGTT
CTTTGGAAACGGCACGCCGATCTTGGAGGGAAACAGGGTCTCGTCGTCCA
GCTGATCCTGCACCCAAGTCATCAGATAGTCAATATACTTGGGCGCGCTG
CACTTGATGGGCTTCTTTACGGTCAAACCGTCGGCCCAGTGGTACTCGTA
TTTCGGACCAGCCGACATGATGCCACAGGTCTCCTCGGTGCAGAACTCGG
TGATGGTGCCGTACAGCATGTTGATCTGGTTGAAAAAGTCCACGGTGTTA
ACGGCCACCCACTCGTTGAGATCCTCGCCATCTGGAAGGGCCACTGCATT
GCGCAGGTTTCCCGATCCCAGCGTGGCTGCCGCATGCTTCATGAGATCAT
ATTGGTGTGTGCCTTCCGGGATGTTCTTCTTGGGCTTGAAGGTCTTGCTG
GAACGGGAACCGAACAAGAAGTCCATGTCGACTGATAACT

BS06360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13852-PA 660 mats-RA 1..660 676..17 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 1096 CG13852-RC 264..924 677..17 3305 100 Minus
mats-RB 1716 CG13852-RB 428..1088 677..17 3305 100 Minus
mats-RA 1260 CG13852-RA 428..1088 677..17 3305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422674 495..17 2395 100 Minus
3R 32079331 3R 22421968..22422134 662..496 835 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:15:43 has no hits.

BS06360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:39 Download gff for BS06360.3prime
Subject Subject Range Query Range Percent Splice Strand
mats-PA 1..660 17..676 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:00 Download gff for BS06360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13852-PA 1..660 17..676 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:27 Download gff for BS06360.3prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1088 17..688 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:26 Download gff for BS06360.3prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1088 17..688 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:26 Download gff for BS06360.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22421968..22422134 496..662 100 -> Minus
3R 22422196..22422674 17..495 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:27 Download gff for BS06360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18247690..18247856 496..662 100 -> Minus
arm_3R 18247918..18248396 17..495 100   Minus

BS06360.5prime Sequence

690 bp (689 high quality bases) assembled on 2005-12-03

> BS06360.5prime
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATATAGAAGCTTTCTAGACC

BS06360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13852-PA 660 mats-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 1096 CG13852-RC 264..924 16..676 3305 100 Plus
mats-RB 1716 CG13852-RB 428..1088 16..676 3305 100 Plus
mats-RA 1260 CG13852-RA 428..1088 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422674 198..676 2395 100 Plus
3R 32079331 3R 22421968..22422134 31..197 835 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:30:28 has no hits.

BS06360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:40 Download gff for BS06360.5prime
Subject Subject Range Query Range Percent Splice Strand
mats-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:01 Download gff for BS06360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13852-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:40 Download gff for BS06360.5prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1088 5..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:22 Download gff for BS06360.5prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1088 5..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:22 Download gff for BS06360.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22421968..22422134 31..197 100 -> Plus
3R 22422196..22422674 198..676 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:40 Download gff for BS06360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18247690..18247856 31..197 100 -> Plus
arm_3R 18247918..18248396 198..676 100   Plus

BS06360.complete Sequence

692 bp (692 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635459

> BS06360.complete
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATATAGAAGCTTTCTAGACCAT

BS06360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 660 CG13852-PC 1..660 17..676 3300 100 Plus
mats-RB 660 CG13852-PB 1..660 17..676 3300 100 Plus
mats-RA 660 CG13852-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 1096 CG13852-RC 264..924 16..676 3305 100 Plus
mats-RB 1716 CG13852-RB 428..1088 16..676 3305 100 Plus
mats-RA 1260 CG13852-RA 428..1088 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422674 198..676 2395 100 Plus
3R 32079331 3R 22421968..22422134 31..197 835 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:52:51 has no hits.

BS06360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:28 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:49 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 426..1094 5..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:08 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 429..1088 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:28 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 426..1094 5..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:02 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 429..1088 17..676 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:02 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22421968..22422134 31..197 100 -> Plus
3R 22422196..22422674 198..676 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:08 Download gff for BS06360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18247690..18247856 31..197 100 -> Plus
arm_3R 18247918..18248396 198..676 100   Plus

BS06360.pep Sequence

Translation from 16 to 675

> BS06360.pep
MDFLFGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVALPDG
EDLNEWVAVNTVDFFNQINMLYGTITEFCTEETCGIMSAGPKYEYHWADG
LTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFHSSAKT
ILKRLFRVYAHIYHQHFTEVVTLGEEAHLNTSFKHFIFFVQEFNLIERRE
LAPLQELIDKLTAKDERQI*

BS06360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
mats-PC 219 CG13852-PC 1..219 1..219 1169 100 Plus
mats-PB 219 CG13852-PB 1..219 1..219 1169 100 Plus
mats-PA 219 CG13852-PA 1..219 1..219 1169 100 Plus
Mob3-PA 220 CG4946-PA 6..215 3..211 612 52.9 Plus
Mob2-PC 431 CG11711-PC 31..209 36..216 360 40.3 Plus