Clone Sequence Records
BS06367.5prime Sequence
528 bp (527 high quality bases) assembled on 2005-12-03
> BS06367.5prime
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAATAGAAGCTTTCTAGACC
BS06367.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-PA | 498 | CG2147-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 746 | CG2147-RA | 86..584 | 16..514 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8240938..8241321 | 131..514 | 1920 | 100 | Plus |
X | 23542271 | X | 8240769..8240885 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:24:56 has no hits.
BS06367.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:53 Download gff for
BS06367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:18 Download gff for
BS06367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:05 Download gff for
BS06367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..584 | 10..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:26 Download gff for
BS06367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..584 | 10..514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:26 Download gff for
BS06367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8240763..8240884 | 10..131 | 97 | -> | Plus |
X | 8240939..8241321 | 132..514 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:05 Download gff for
BS06367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8134796..8134917 | 10..131 | 97 | -> | Plus |
arm_X | 8134972..8135354 | 132..514 | 100 | | Plus |
BS06367.3prime Sequence
528 bp (527 high quality bases) assembled on 2005-12-03
> BS06367.3prime
ATGGTCTAGAAAGCTTCTATTTGGTTCTTGGTGGAACCTTGGCCACCCTG
GAGGGATCGATGCTGATGCTGTGGGCCAACGGTGGCAGGCGCACGGCATT
GGCATTTGGTCCCGCTCCGAAACCGCCCACATCCGCTCCACCGGCCGGTG
GATTGTTGGGATCCGGATATGGAATCTGGCGCTGGGGTGTTACCAGGGCC
ACGGGACGCGGCGAGATTGAATCTTGTGCTGTAGGTATTGATAGTTGTGG
CTGAACCAGCTGGACACTAGAGGACTTCCCGTCCAGCGGGTGGGCCACGC
GCTTGCGAAGATCTAGGCGTGGACGACTATTGTTTAATTTGCAGCTCTGA
GAATCCGCCGAAATGGGTGGCGGGTCATTCCAGCCGGGAGTCAGGGATCC
AGGAAACGCTCCCGATGGAGCTATGATTTGCCCCGTTGGCGGTGGCGGTG
GAACGCTTGCCACCTGCTGTGGGTTAATACTATTGGTGGCACGAAGCGGC
GGTGTTGGATCCATGTCGACTGATAACT
BS06367.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-PA | 498 | CG2147-RA | 1..498 | 514..17 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 746 | CG2147-RA | 86..584 | 515..17 | 2495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8240938..8241321 | 400..17 | 1920 | 100 | Minus |
X | 23542271 | X | 8240769..8240885 | 515..399 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:13:54 has no hits.
BS06367.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:52 Download gff for
BS06367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:16 Download gff for
BS06367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:15 Download gff for
BS06367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..584 | 17..521 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:09 Download gff for
BS06367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..584 | 17..521 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:09 Download gff for
BS06367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8240763..8240884 | 400..521 | 97 | -> | Minus |
X | 8240939..8241321 | 17..399 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:15 Download gff for
BS06367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8134796..8134917 | 400..521 | 97 | -> | Minus |
arm_X | 8134972..8135354 | 17..399 | 100 | | Minus |
BS06367.complete Sequence
530 bp (530 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635462
> BS06367.complete
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAATAGAAGCTTTCTAGACCAT
BS06367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 498 | CG2147-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 746 | CG2147-RA | 86..584 | 16..514 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8240938..8241321 | 131..514 | 1920 | 100 | Plus |
X | 23542271 | X | 8240769..8240885 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:46:22 has no hits.
BS06367.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:13 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:39 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..584 | 10..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:56 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 87..578 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:14 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..584 | 10..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:26 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 87..578 | 17..508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:26 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8240770..8240884 | 17..131 | 100 | -> | Plus |
X | 8240939..8241315 | 132..508 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:56 Download gff for
BS06367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8134803..8134917 | 17..131 | 100 | -> | Plus |
arm_X | 8134972..8135348 | 132..508 | 100 | | Plus |
BS06367.pep Sequence
Translation from 16 to 513
> BS06367.pep
MDPTPPLRATNSINPQQVASVPPPPPTGQIIAPSGAFPGSLTPGWNDPPP
ISADSQSCKLNNSRPRLDLRKRVAHPLDGKSSSVQLVQPQLSIPTAQDSI
SPRPVALVTPQRQIPYPDPNNPPAGGADVGGFGAGPNANAVRLPPLAHSI
SIDPSRVAKVPPRTK*
BS06367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-PA | 165 | CG2147-PA | 1..165 | 1..165 | 877 | 100 | Plus |