Clone BS06367 Report

Search the DGRC for BS06367

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG2147-RA
Protein status:BS06367.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06367.5prime Sequence

528 bp (527 high quality bases) assembled on 2005-12-03

> BS06367.5prime
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAATAGAAGCTTTCTAGACC

BS06367.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-PA 498 CG2147-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 746 CG2147-RA 86..584 16..514 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8240938..8241321 131..514 1920 100 Plus
X 23542271 X 8240769..8240885 16..132 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:24:56 has no hits.

BS06367.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:53 Download gff for BS06367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 17..514 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:18 Download gff for BS06367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:05 Download gff for BS06367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..584 10..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:26 Download gff for BS06367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..584 10..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:26 Download gff for BS06367.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8240763..8240884 10..131 97 -> Plus
X 8240939..8241321 132..514 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:05 Download gff for BS06367.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8134796..8134917 10..131 97 -> Plus
arm_X 8134972..8135354 132..514 100   Plus

BS06367.3prime Sequence

528 bp (527 high quality bases) assembled on 2005-12-03

> BS06367.3prime
ATGGTCTAGAAAGCTTCTATTTGGTTCTTGGTGGAACCTTGGCCACCCTG
GAGGGATCGATGCTGATGCTGTGGGCCAACGGTGGCAGGCGCACGGCATT
GGCATTTGGTCCCGCTCCGAAACCGCCCACATCCGCTCCACCGGCCGGTG
GATTGTTGGGATCCGGATATGGAATCTGGCGCTGGGGTGTTACCAGGGCC
ACGGGACGCGGCGAGATTGAATCTTGTGCTGTAGGTATTGATAGTTGTGG
CTGAACCAGCTGGACACTAGAGGACTTCCCGTCCAGCGGGTGGGCCACGC
GCTTGCGAAGATCTAGGCGTGGACGACTATTGTTTAATTTGCAGCTCTGA
GAATCCGCCGAAATGGGTGGCGGGTCATTCCAGCCGGGAGTCAGGGATCC
AGGAAACGCTCCCGATGGAGCTATGATTTGCCCCGTTGGCGGTGGCGGTG
GAACGCTTGCCACCTGCTGTGGGTTAATACTATTGGTGGCACGAAGCGGC
GGTGTTGGATCCATGTCGACTGATAACT

BS06367.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-PA 498 CG2147-RA 1..498 514..17 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 746 CG2147-RA 86..584 515..17 2495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8240938..8241321 400..17 1920 100 Minus
X 23542271 X 8240769..8240885 515..399 585 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:13:54 has no hits.

BS06367.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:52 Download gff for BS06367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 17..514 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:16 Download gff for BS06367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 17..514 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:15 Download gff for BS06367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..584 17..521 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:09 Download gff for BS06367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..584 17..521 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:09 Download gff for BS06367.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8240763..8240884 400..521 97 -> Minus
X 8240939..8241321 17..399 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:15 Download gff for BS06367.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8134796..8134917 400..521 97 -> Minus
arm_X 8134972..8135354 17..399 100   Minus

BS06367.complete Sequence

530 bp (530 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635462

> BS06367.complete
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAATAGAAGCTTTCTAGACCAT

BS06367.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 498 CG2147-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 746 CG2147-RA 86..584 16..514 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8240938..8241321 131..514 1920 100 Plus
X 23542271 X 8240769..8240885 16..132 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:46:22 has no hits.

BS06367.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:13 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:39 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..584 10..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:56 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 87..578 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:14 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..584 10..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:26 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 87..578 17..508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:26 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
X 8240770..8240884 17..131 100 -> Plus
X 8240939..8241315 132..508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:56 Download gff for BS06367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8134803..8134917 17..131 100 -> Plus
arm_X 8134972..8135348 132..508 100   Plus

BS06367.pep Sequence

Translation from 16 to 513

> BS06367.pep
MDPTPPLRATNSINPQQVASVPPPPPTGQIIAPSGAFPGSLTPGWNDPPP
ISADSQSCKLNNSRPRLDLRKRVAHPLDGKSSSVQLVQPQLSIPTAQDSI
SPRPVALVTPQRQIPYPDPNNPPAGGADVGGFGAGPNANAVRLPPLAHSI
SIDPSRVAKVPPRTK*

BS06367.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-PA 165 CG2147-PA 1..165 1..165 877 100 Plus