Clone Sequence Records
BS06368.3prime Sequence
963 bp (886 high quality bases) assembled on 2005-12-03
> BS06368.3prime
ATGGTCTAGAAAGCTTTCATGTACTAGCCGTCGAATTACAAATGGCGTAA
TCGGGAATTTTGGTGGTGCAGATATTGTTCACCTCGTCGTAGTACGGCGC
ATTGGTGGGACATGATCCGGTTATTCCGCTGGAGCAGATTGTGTAGTTCT
TGCAACCCTCATCTGCCATGAATGGATTGTTAACGTTCCCACATCGGTTA
TGGGTACAGACAAAGGAGGCTGGCGAAACGCACTTGCCAGCATTGAATTG
GGTACCGGTGGGACATTGGTTCCAATAGCCAGTGGCGTTTACTGCTGCAC
AGTAGTAGTACCCATAGCAGGTGACACCATCAGAAACGTACCTATAGTCA
ACAGATTCCCCATTTACAGTAAGTGGATCTGCTGCTTTAAAAGCTTCTTC
GTCACAAGCAGTTGCATTTGTTTGCCCAACAGTGAACTGGTCAGAGTTTC
CACTGTTTGAATCTTCGCCGGTGCACGGATTCGTCGACTGGCAGTTGCCA
GTGGCTTTATTATAGTAGGGATTGGCGGTGCTGGAACATTTTTCGGAAGT
GCCATAGCCGTTGACGCAGTTGATGTAGTTGCCGCACTGGTTCGGATCGC
CTACAAAGATGTTGGACAACATGAACCGACAGATGGTGTCCTGCGGGCAG
GCGGGTCCCCATATACATTTTGTGGAGGATGCCGAATAGACGCCGCCGGT
GCCGCAATCGCCATAGGAGATTTGGCCTGTGCCATCGCAGTAGGCGTATT
CGGTGCAGTTCAACGGATTGGCCACATACATGGGAGATTTGACGTTGGAG
CATGTCTCAACGGCACTGGTGGAGCACACCGTGGTATTAGCGTAATCACA
GCTGCCGGCCTGCGCGTTGAAACACCAGCCGTTGGGACAGGTGCCCCAGG
CCACANCCTCCTGGTTCTTGCAGTATCCCCAGGCATGGCAGTTGCTCGGA
TTGCCGATGTATC
BS06368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-PA | 1056 | CG6933-RA | 202..1056 | 871..17 | 4275 | 100 | Minus |
CG6933-PC | 1092 | CG6933-RC | 238..1092 | 871..17 | 4275 | 100 | Minus |
CG6933-PB | 1056 | CG6933-RB | 202..1056 | 871..17 | 4275 | 100 | Minus |
CG6933-PA | 1056 | CG6933-RA | 110..196 | 963..877 | 416 | 98.8 | Minus |
CG6933-PC | 1092 | CG6933-RC | 146..232 | 963..877 | 416 | 98.8 | Minus |
CG6933-PB | 1056 | CG6933-RB | 110..196 | 963..877 | 416 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RD | 1413 | CG6933-RD | 354..1300 | 963..17 | 4679 | 99.7 | Minus |
CG6933-RE | 1377 | CG6933-RE | 318..1264 | 963..17 | 4679 | 99.7 | Minus |
CG6933-RB | 1246 | CG6933-RB | 187..1133 | 963..17 | 4679 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20218615..20219561 | 17..963 | 4664 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:41:38 has no hits.
BS06368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:54 Download gff for
BS06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PC | 146..1092 | 17..963 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:19 Download gff for
BS06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PB | 110..1056 | 17..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:55 Download gff for
BS06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 187..1139 | 8..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:44 Download gff for
BS06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 187..1139 | 8..963 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:44 Download gff for
BS06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20218609..20219561 | 8..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:55 Download gff for
BS06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20211709..20212661 | 8..963 | 99 | | Plus |
BS06368.5prime Sequence
850 bp (849 high quality bases) assembled on 2005-12-03
> BS06368.5prime
GAAGTTATCAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCT
BS06368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-PB | 1056 | CG6933-RB | 1..834 | 17..850 | 4170 | 100 | Plus |
CG6933-PA | 1056 | CG6933-RA | 6..834 | 22..850 | 4145 | 100 | Plus |
CG6933-PC | 1092 | CG6933-RC | 42..870 | 22..850 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RE | 1377 | CG6933-RE | 209..1042 | 17..850 | 4170 | 100 | Plus |
CG6933-RB | 1246 | CG6933-RB | 78..911 | 17..850 | 4170 | 100 | Plus |
CG6933-RD | 1413 | CG6933-RD | 250..1078 | 22..850 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20218837..20219665 | 850..22 | 4145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:42:01 has no hits.
BS06368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:55 Download gff for
BS06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:20 Download gff for
BS06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:01 Download gff for
BS06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..911 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:33 Download gff for
BS06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..911 | 9..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:33 Download gff for
BS06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20218837..20219670 | 16..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:01 Download gff for
BS06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20211937..20212770 | 16..850 | 99 | | Minus |
BS06368.complete Sequence
1088 bp (1088 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635463
> BS06368.complete
GAAGTTATCAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCT
GGCAAGTGCGTTTCGCCAGCCTCCTTTGTCTGTACCCATAACCGATGTGG
GAACGTTAACAATCCATTCATGGCAGATGAGGGTTGCAAGAACTACACAA
TCTGCTCCAGCGGAATAACCGGATCATGTCCCACCAATGCGCCGTACTAC
GACGAGGTGAACAATATCTGCACCACCAAAATTCCCGATTACGCCATTTG
TAATTCGACGGCTAGTACATGAAAGCTTTCTAGACCAT
BS06368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RE | 1056 | CG6933-PE | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG6933-RB | 1056 | CG6933-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG6933-RD | 1092 | CG6933-PD | 42..1092 | 22..1072 | 5255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RE | 1377 | CG6933-RE | 209..1264 | 17..1072 | 5280 | 100 | Plus |
CG6933-RB | 1246 | CG6933-RB | 78..1133 | 17..1072 | 5280 | 100 | Plus |
CG6933-RD | 1413 | CG6933-RD | 250..1300 | 22..1072 | 5255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20218615..20219665 | 1072..22 | 5255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:58:13 has no hits.
BS06368.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:45 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:11 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..1139 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:27 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 78..1132 | 17..1071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:45 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..1139 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:30 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 78..1132 | 17..1071 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:30 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20218616..20219669 | 17..1071 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:27 Download gff for
BS06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20211716..20212769 | 17..1071 | 99 | | Minus |
BS06368.pep Sequence
Translation from 16 to 1071
> BS06368.pep
MGAINMRICVVAACLLMASQATGYTMDDLCQQWSGYGYIGNPSNCHAWGY
CKNQEVVAWGTCPNGLVFNAQAGSCDYANTTVCSTSAVETCSNVKSPMYV
ANPLNCTEYAYCDGTGQISYGDCGTGGVYSASSTKCIWGPACPQDTICRF
MLSNIFVGDPNQCGNYINCVNGYGTSEKCSSTANPYYNKATGNCQSTNPC
TGEDSNSGNSDQFTVGQTNATACDEEAFKAADPLTVNGESVDYRYVSDGV
TCYGYYYCAAVNATGYWNQCPTGTQFNAGKCVSPASFVCTHNRCGNVNNP
FMADEGCKNYTICSSGITGSCPTNAPYYDEVNNICTTKIPDYAICNSTAS
T*
BS06368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-PE | 351 | CG6933-PE | 1..351 | 1..351 | 1992 | 100 | Plus |
CG6933-PB | 351 | CG6933-PB | 1..351 | 1..351 | 1992 | 100 | Plus |
CG6933-PA | 351 | CG6933-PA | 1..351 | 1..351 | 1984 | 99.7 | Plus |
CG6933-PD | 363 | CG6933-PD | 13..363 | 1..351 | 1982 | 99.4 | Plus |
CG6933-PC | 363 | CG6933-PC | 13..363 | 1..351 | 1982 | 99.4 | Plus |