Clone BS06368 Report

Search the DGRC for BS06368

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG6933-RB
Protein status:BS06368.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06368.3prime Sequence

963 bp (886 high quality bases) assembled on 2005-12-03

> BS06368.3prime
ATGGTCTAGAAAGCTTTCATGTACTAGCCGTCGAATTACAAATGGCGTAA
TCGGGAATTTTGGTGGTGCAGATATTGTTCACCTCGTCGTAGTACGGCGC
ATTGGTGGGACATGATCCGGTTATTCCGCTGGAGCAGATTGTGTAGTTCT
TGCAACCCTCATCTGCCATGAATGGATTGTTAACGTTCCCACATCGGTTA
TGGGTACAGACAAAGGAGGCTGGCGAAACGCACTTGCCAGCATTGAATTG
GGTACCGGTGGGACATTGGTTCCAATAGCCAGTGGCGTTTACTGCTGCAC
AGTAGTAGTACCCATAGCAGGTGACACCATCAGAAACGTACCTATAGTCA
ACAGATTCCCCATTTACAGTAAGTGGATCTGCTGCTTTAAAAGCTTCTTC
GTCACAAGCAGTTGCATTTGTTTGCCCAACAGTGAACTGGTCAGAGTTTC
CACTGTTTGAATCTTCGCCGGTGCACGGATTCGTCGACTGGCAGTTGCCA
GTGGCTTTATTATAGTAGGGATTGGCGGTGCTGGAACATTTTTCGGAAGT
GCCATAGCCGTTGACGCAGTTGATGTAGTTGCCGCACTGGTTCGGATCGC
CTACAAAGATGTTGGACAACATGAACCGACAGATGGTGTCCTGCGGGCAG
GCGGGTCCCCATATACATTTTGTGGAGGATGCCGAATAGACGCCGCCGGT
GCCGCAATCGCCATAGGAGATTTGGCCTGTGCCATCGCAGTAGGCGTATT
CGGTGCAGTTCAACGGATTGGCCACATACATGGGAGATTTGACGTTGGAG
CATGTCTCAACGGCACTGGTGGAGCACACCGTGGTATTAGCGTAATCACA
GCTGCCGGCCTGCGCGTTGAAACACCAGCCGTTGGGACAGGTGCCCCAGG
CCACANCCTCCTGGTTCTTGCAGTATCCCCAGGCATGGCAGTTGCTCGGA
TTGCCGATGTATC

BS06368.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-PA 1056 CG6933-RA 202..1056 871..17 4275 100 Minus
CG6933-PC 1092 CG6933-RC 238..1092 871..17 4275 100 Minus
CG6933-PB 1056 CG6933-RB 202..1056 871..17 4275 100 Minus
CG6933-PA 1056 CG6933-RA 110..196 963..877 416 98.8 Minus
CG6933-PC 1092 CG6933-RC 146..232 963..877 416 98.8 Minus
CG6933-PB 1056 CG6933-RB 110..196 963..877 416 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-RD 1413 CG6933-RD 354..1300 963..17 4679 99.7 Minus
CG6933-RE 1377 CG6933-RE 318..1264 963..17 4679 99.7 Minus
CG6933-RB 1246 CG6933-RB 187..1133 963..17 4679 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20218615..20219561 17..963 4664 99.5 Plus
Blast to na_te.dros performed on 2015-02-06 12:41:38 has no hits.

BS06368.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:54 Download gff for BS06368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-PC 146..1092 17..963 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:19 Download gff for BS06368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-PB 110..1056 17..963 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:55 Download gff for BS06368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 187..1139 8..963 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:44 Download gff for BS06368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 187..1139 8..963 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:44 Download gff for BS06368.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20218609..20219561 8..963 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:55 Download gff for BS06368.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20211709..20212661 8..963 99   Plus

BS06368.5prime Sequence

850 bp (849 high quality bases) assembled on 2005-12-03

> BS06368.5prime
GAAGTTATCAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCT

BS06368.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-PB 1056 CG6933-RB 1..834 17..850 4170 100 Plus
CG6933-PA 1056 CG6933-RA 6..834 22..850 4145 100 Plus
CG6933-PC 1092 CG6933-RC 42..870 22..850 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-RE 1377 CG6933-RE 209..1042 17..850 4170 100 Plus
CG6933-RB 1246 CG6933-RB 78..911 17..850 4170 100 Plus
CG6933-RD 1413 CG6933-RD 250..1078 22..850 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20218837..20219665 850..22 4145 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:42:01 has no hits.

BS06368.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:38:55 Download gff for BS06368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-PB 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:20 Download gff for BS06368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-PB 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:01 Download gff for BS06368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 69..911 9..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:33 Download gff for BS06368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 69..911 9..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:33 Download gff for BS06368.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20218837..20219670 16..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:01 Download gff for BS06368.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20211937..20212770 16..850 99   Minus

BS06368.complete Sequence

1088 bp (1088 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635463

> BS06368.complete
GAAGTTATCAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCT
GGCAAGTGCGTTTCGCCAGCCTCCTTTGTCTGTACCCATAACCGATGTGG
GAACGTTAACAATCCATTCATGGCAGATGAGGGTTGCAAGAACTACACAA
TCTGCTCCAGCGGAATAACCGGATCATGTCCCACCAATGCGCCGTACTAC
GACGAGGTGAACAATATCTGCACCACCAAAATTCCCGATTACGCCATTTG
TAATTCGACGGCTAGTACATGAAAGCTTTCTAGACCAT

BS06368.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-RE 1056 CG6933-PE 1..1056 17..1072 5280 100 Plus
CG6933-RB 1056 CG6933-PB 1..1056 17..1072 5280 100 Plus
CG6933-RD 1092 CG6933-PD 42..1092 22..1072 5255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-RE 1377 CG6933-RE 209..1264 17..1072 5280 100 Plus
CG6933-RB 1246 CG6933-RB 78..1133 17..1072 5280 100 Plus
CG6933-RD 1413 CG6933-RD 250..1300 22..1072 5255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20218615..20219665 1072..22 5255 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:58:13 has no hits.

BS06368.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:45 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:11 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 69..1139 9..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:27 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 78..1132 17..1071 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:45 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 69..1139 9..1081 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:30 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 78..1132 17..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:30 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20218616..20219669 17..1071 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:27 Download gff for BS06368.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20211716..20212769 17..1071 99   Minus

BS06368.pep Sequence

Translation from 16 to 1071

> BS06368.pep
MGAINMRICVVAACLLMASQATGYTMDDLCQQWSGYGYIGNPSNCHAWGY
CKNQEVVAWGTCPNGLVFNAQAGSCDYANTTVCSTSAVETCSNVKSPMYV
ANPLNCTEYAYCDGTGQISYGDCGTGGVYSASSTKCIWGPACPQDTICRF
MLSNIFVGDPNQCGNYINCVNGYGTSEKCSSTANPYYNKATGNCQSTNPC
TGEDSNSGNSDQFTVGQTNATACDEEAFKAADPLTVNGESVDYRYVSDGV
TCYGYYYCAAVNATGYWNQCPTGTQFNAGKCVSPASFVCTHNRCGNVNNP
FMADEGCKNYTICSSGITGSCPTNAPYYDEVNNICTTKIPDYAICNSTAS
T*

BS06368.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-PE 351 CG6933-PE 1..351 1..351 1992 100 Plus
CG6933-PB 351 CG6933-PB 1..351 1..351 1992 100 Plus
CG6933-PA 351 CG6933-PA 1..351 1..351 1984 99.7 Plus
CG6933-PD 363 CG6933-PD 13..363 1..351 1982 99.4 Plus
CG6933-PC 363 CG6933-PC 13..363 1..351 1982 99.4 Plus