Clone BS06373 Report

Search the DGRC for BS06373

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG9021-RA
Protein status:BS06373.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06373.3prime Sequence

920 bp (899 high quality bases) assembled on 2005-12-03

> BS06373.3prime
ATGGTCTAGAAAGCTTCTAAAGACTCCAGATGACGGTCTCTCCGGCCATG
TCCACGGTGCTCCAACCAAGGGCGTTAGCCACCAGTTGCTGCAGCTGGCG
CAGAGGAACACCAGACTTTTCCAGATCGGCGGCCAGGGAGCGGTACTCCT
TAAGTTGACGCAGATCGCGCAGCAGCCGCCGGAATTCCGAGCCGCGGATC
AGGCGAATGGCGCTCGAGAGCTCCGAGTCGGAGGAGTAGAGTTGCTGGTA
CATATTCCTCAAGGCGGTACGGGGCAAGGCTTCACGGAGATCCTGGAGCA
ATCCGCGGACACCCGGGCGACGGTTGGGCAACTTAATGGTCGGTGGGTCG
GAAATGTGTAGGTCGAGGAACACGCGCACGTACTCCGCGTAGTAAGTGGG
ATCCAATTTAAGTCGCCGACAGACATAGTCATGGAGCAGCTGGTGCTGCT
TGGTGGCCTTCAGCAGCTGCACTTGCGTTTTGAAGTTATCGCTGCGGAGC
AACTTGATCAACTCTTGAACCTGGGGATCCTCAACGCCATTCGCCAGGAT
GTTCTTCAGTGTGGCAGCAGGCAAAAGTGGGCGAGCTACGCGGACGAGGT
TGGTGAGTCCACGCTCAGCATTGGTGGGGCACTCCTTGTTCTCCTTGGGC
TGCAGGACGAGATCCAACGTGTCTTTGGGCGTGGAGTTCTCGGCAGTGGC
TGCGGTGCCAACTGGCTTTTCGGTCACTTCCCGTGCGAATCGTACATGCT
CCTGCTCCTCCCAAACGGGCAGCCAGTTGATCTTGTGCGCATTCATTTCA
ATCTCCTCATCGGTCTCCGCAACTATGCCGGGTAGCTCTTGAGATTCATC
TGGAAAGCCATCGACAATGTAAGTGGTGGTGCTATCGGAGAGCTCCTGGG
GCTCACGACCGATTGTCCTG

BS06373.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-PA 951 CG9021-RA 64..951 904..17 4415 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-RB 1382 CG9021-RB 75..979 920..17 4485 99.8 Minus
CG9021-RA 1201 CG9021-RA 75..979 920..17 4485 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5903581..5904463 17..899 4400 99.9 Plus
Blast to na_te.dros performed on 2015-02-06 12:41:24 has no hits.

BS06373.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:05 Download gff for BS06373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-PA 47..951 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:33 Download gff for BS06373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-PA 47..951 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:54 Download gff for BS06373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 60..964 17..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:42 Download gff for BS06373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 75..979 17..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:42 Download gff for BS06373.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5903587..5904459 23..895 99 -> Plus
2L 5904590..5904615 896..920 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:54 Download gff for BS06373.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5903587..5904459 23..895 99 -> Plus
arm_2L 5904590..5904615 896..920 96   Plus

BS06373.5prime Sequence

918 bp (831 high quality bases) assembled on 2005-12-03

> BS06373.5prime
GAAGTTATCAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCC
TGCTTTTGGTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGAT
AGCACCACCACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCT
ACCCGGCATAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACA
AGATCAACTGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCA
CGGGAAGTGACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTC
CACGCCCAAAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGG
AGTGCCCCACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCT
CGCCCACTTTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGT
TGAGGATCCCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACT
TCAAAACGCAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTC
CATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGA
GTACGTGCGCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTA
AGTTGCCCAACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGT
GAAGCCTTGCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTC
CTCCGACTCGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAAT
TCCGGCGGCTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTG
NCCGCCGATCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACT
GGTGGCTAACGCCCTTGG

BS06373.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-PA 951 CG9021-RA 1..902 17..918 4466 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-RB 1382 CG9021-RB 29..930 17..918 4484 99.8 Plus
CG9021-RA 1201 CG9021-RA 29..930 17..918 4484 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5903630..5904463 918..85 4144 99.8 Minus
2L 23513712 2L 5904589..5904661 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:43:15 has no hits.

BS06373.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:06 Download gff for BS06373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:35 Download gff for BS06373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:47:08 Download gff for BS06373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 9..915 8..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:10 Download gff for BS06373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 24..930 8..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:10 Download gff for BS06373.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5903630..5904459 89..918 99 <- Minus
2L 5904590..5904666 8..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:47:08 Download gff for BS06373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5903630..5904459 89..918 99 <- Minus
arm_2L 5904590..5904666 8..88 95   Minus

BS06373.complete Sequence

983 bp (983 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635465

> BS06373.complete
GAAGTTATCAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCC
TGCTTTTGGTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGAT
AGCACCACCACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCT
ACCCGGCATAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACA
AGATCAACTGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCA
CGGGAAGTGACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTC
CACGCCCAAAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGG
AGTGCCCCACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCT
CGCCCACTTTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGT
TGAGGATCCCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACT
TCAAAACGCAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTC
CATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGA
GTACGTGCGCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTA
AGTTGCCCAACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGT
GAAGCCTTGCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTC
CTCCGACTCGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAAT
TCCGGCGGCTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTG
GCCGCCGATCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACT
GGTGGCTAACGCCCTTGGTTGGAGCACCGTGGACATGGCCGGAGAGACCG
TCATCTGGAGTCTTTAGAAGCTTTCTAGACCAT

BS06373.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-RB 951 CG9021-PB 1..951 17..967 4740 99.9 Plus
CG9021-RA 951 CG9021-PA 1..951 17..967 4740 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-RB 1382 CG9021-RB 29..979 17..967 4740 99.9 Plus
CG9021-RA 1201 CG9021-RA 29..979 17..967 4740 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5903581..5904463 967..85 4400 99.9 Minus
2L 23513712 2L 5904589..5904661 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:52:34 has no hits.

BS06373.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:48 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 1..951 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:14 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 9..964 8..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:57 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 14..964 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:48 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 9..964 8..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:56 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
CG9021-RA 29..979 17..967 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:56 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5903581..5904459 89..967 99 <- Minus
2L 5904590..5904661 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:57 Download gff for BS06373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5903581..5904459 89..967 99 <- Minus
arm_2L 5904590..5904661 17..88 100   Minus

BS06373.pep Sequence

Translation from 16 to 966

> BS06373.pep
MHRLVVIFSFCLLLVAGQSVVEPQELSDSTTTYIVDGFPDESQELPGIVA
ETDEEIEMNAHKINWLPVWEEQEHVRFAREVTEKPVGTAATAENSTPKDT
LDLVLQPKENKECPTNAERGLTNLVRVARPLLPAATLKNILANGVEDPQV
QELIKLLRSDNFKTQVQLLKATKQHQLLHDYVCRRLKLDPTYYAEYVRVF
LDLHISDPPTIKLPNRRPGVRGLLQDLREALPRTALRNMYQQLYSSDSEL
SSAIRLIRGSEFRRLLRDLRQLKEYRSLAADLEKSGVPLRQLQQLVANAL
GWSTVDMAGETVIWSL*

BS06373.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9021-PB 316 CG9021-PB 1..316 1..316 1610 100 Plus
CG9021-PA 316 CG9021-PA 1..316 1..316 1610 100 Plus