Clone Sequence Records
BS06373.3prime Sequence
920 bp (899 high quality bases) assembled on 2005-12-03
> BS06373.3prime
ATGGTCTAGAAAGCTTCTAAAGACTCCAGATGACGGTCTCTCCGGCCATG
TCCACGGTGCTCCAACCAAGGGCGTTAGCCACCAGTTGCTGCAGCTGGCG
CAGAGGAACACCAGACTTTTCCAGATCGGCGGCCAGGGAGCGGTACTCCT
TAAGTTGACGCAGATCGCGCAGCAGCCGCCGGAATTCCGAGCCGCGGATC
AGGCGAATGGCGCTCGAGAGCTCCGAGTCGGAGGAGTAGAGTTGCTGGTA
CATATTCCTCAAGGCGGTACGGGGCAAGGCTTCACGGAGATCCTGGAGCA
ATCCGCGGACACCCGGGCGACGGTTGGGCAACTTAATGGTCGGTGGGTCG
GAAATGTGTAGGTCGAGGAACACGCGCACGTACTCCGCGTAGTAAGTGGG
ATCCAATTTAAGTCGCCGACAGACATAGTCATGGAGCAGCTGGTGCTGCT
TGGTGGCCTTCAGCAGCTGCACTTGCGTTTTGAAGTTATCGCTGCGGAGC
AACTTGATCAACTCTTGAACCTGGGGATCCTCAACGCCATTCGCCAGGAT
GTTCTTCAGTGTGGCAGCAGGCAAAAGTGGGCGAGCTACGCGGACGAGGT
TGGTGAGTCCACGCTCAGCATTGGTGGGGCACTCCTTGTTCTCCTTGGGC
TGCAGGACGAGATCCAACGTGTCTTTGGGCGTGGAGTTCTCGGCAGTGGC
TGCGGTGCCAACTGGCTTTTCGGTCACTTCCCGTGCGAATCGTACATGCT
CCTGCTCCTCCCAAACGGGCAGCCAGTTGATCTTGTGCGCATTCATTTCA
ATCTCCTCATCGGTCTCCGCAACTATGCCGGGTAGCTCTTGAGATTCATC
TGGAAAGCCATCGACAATGTAAGTGGTGGTGCTATCGGAGAGCTCCTGGG
GCTCACGACCGATTGTCCTG
BS06373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-PA | 951 | CG9021-RA | 64..951 | 904..17 | 4415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-RB | 1382 | CG9021-RB | 75..979 | 920..17 | 4485 | 99.8 | Minus |
CG9021-RA | 1201 | CG9021-RA | 75..979 | 920..17 | 4485 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5903581..5904463 | 17..899 | 4400 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:41:24 has no hits.
BS06373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:05 Download gff for
BS06373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-PA | 47..951 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:33 Download gff for
BS06373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-PA | 47..951 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:54 Download gff for
BS06373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 60..964 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:42 Download gff for
BS06373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 75..979 | 17..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:42 Download gff for
BS06373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5903587..5904459 | 23..895 | 99 | -> | Plus |
2L | 5904590..5904615 | 896..920 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:54 Download gff for
BS06373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5903587..5904459 | 23..895 | 99 | -> | Plus |
arm_2L | 5904590..5904615 | 896..920 | 96 | | Plus |
BS06373.5prime Sequence
918 bp (831 high quality bases) assembled on 2005-12-03
> BS06373.5prime
GAAGTTATCAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCC
TGCTTTTGGTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGAT
AGCACCACCACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCT
ACCCGGCATAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACA
AGATCAACTGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCA
CGGGAAGTGACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTC
CACGCCCAAAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGG
AGTGCCCCACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCT
CGCCCACTTTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGT
TGAGGATCCCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACT
TCAAAACGCAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTC
CATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGA
GTACGTGCGCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTA
AGTTGCCCAACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGT
GAAGCCTTGCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTC
CTCCGACTCGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAAT
TCCGGCGGCTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTG
NCCGCCGATCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACT
GGTGGCTAACGCCCTTGG
BS06373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-PA | 951 | CG9021-RA | 1..902 | 17..918 | 4466 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-RB | 1382 | CG9021-RB | 29..930 | 17..918 | 4484 | 99.8 | Plus |
CG9021-RA | 1201 | CG9021-RA | 29..930 | 17..918 | 4484 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5903630..5904463 | 918..85 | 4144 | 99.8 | Minus |
2L | 23513712 | 2L | 5904589..5904661 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:43:15 has no hits.
BS06373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:06 Download gff for
BS06373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:35 Download gff for
BS06373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:47:08 Download gff for
BS06373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 9..915 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:10 Download gff for
BS06373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 24..930 | 8..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:10 Download gff for
BS06373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5903630..5904459 | 89..918 | 99 | <- | Minus |
2L | 5904590..5904666 | 8..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:47:08 Download gff for
BS06373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5903630..5904459 | 89..918 | 99 | <- | Minus |
arm_2L | 5904590..5904666 | 8..88 | 95 | | Minus |
BS06373.complete Sequence
983 bp (983 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635465
> BS06373.complete
GAAGTTATCAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCC
TGCTTTTGGTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGAT
AGCACCACCACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCT
ACCCGGCATAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACA
AGATCAACTGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCA
CGGGAAGTGACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTC
CACGCCCAAAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGG
AGTGCCCCACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCT
CGCCCACTTTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGT
TGAGGATCCCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACT
TCAAAACGCAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTC
CATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGA
GTACGTGCGCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTA
AGTTGCCCAACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGT
GAAGCCTTGCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTC
CTCCGACTCGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAAT
TCCGGCGGCTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTG
GCCGCCGATCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACT
GGTGGCTAACGCCCTTGGTTGGAGCACCGTGGACATGGCCGGAGAGACCG
TCATCTGGAGTCTTTAGAAGCTTTCTAGACCAT
BS06373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-RB | 951 | CG9021-PB | 1..951 | 17..967 | 4740 | 99.9 | Plus |
CG9021-RA | 951 | CG9021-PA | 1..951 | 17..967 | 4740 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-RB | 1382 | CG9021-RB | 29..979 | 17..967 | 4740 | 99.9 | Plus |
CG9021-RA | 1201 | CG9021-RA | 29..979 | 17..967 | 4740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5903581..5904463 | 967..85 | 4400 | 99.9 | Minus |
2L | 23513712 | 2L | 5904589..5904661 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:52:34 has no hits.
BS06373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:48 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:14 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 9..964 | 8..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:57 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 14..964 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:48 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 9..964 | 8..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:56 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9021-RA | 29..979 | 17..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:56 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5903581..5904459 | 89..967 | 99 | <- | Minus |
2L | 5904590..5904661 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:57 Download gff for
BS06373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5903581..5904459 | 89..967 | 99 | <- | Minus |
arm_2L | 5904590..5904661 | 17..88 | 100 | | Minus |
BS06373.pep Sequence
Translation from 16 to 966
> BS06373.pep
MHRLVVIFSFCLLLVAGQSVVEPQELSDSTTTYIVDGFPDESQELPGIVA
ETDEEIEMNAHKINWLPVWEEQEHVRFAREVTEKPVGTAATAENSTPKDT
LDLVLQPKENKECPTNAERGLTNLVRVARPLLPAATLKNILANGVEDPQV
QELIKLLRSDNFKTQVQLLKATKQHQLLHDYVCRRLKLDPTYYAEYVRVF
LDLHISDPPTIKLPNRRPGVRGLLQDLREALPRTALRNMYQQLYSSDSEL
SSAIRLIRGSEFRRLLRDLRQLKEYRSLAADLEKSGVPLRQLQQLVANAL
GWSTVDMAGETVIWSL*
BS06373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9021-PB | 316 | CG9021-PB | 1..316 | 1..316 | 1610 | 100 | Plus |
CG9021-PA | 316 | CG9021-PA | 1..316 | 1..316 | 1610 | 100 | Plus |