Clone BS06375 Report

Search the DGRC for BS06375

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptppl-RA
Protein status:BS06375.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06375.3prime Sequence

528 bp (527 high quality bases) assembled on 2005-12-03

> BS06375.3prime
ATGGTCTAGAAAGCTTCTAGTGATCCCCACTGCTGCTCAGGAAGGCTTTG
TACTGATCCTCGGTCATAAGGGCTTCGAGTTCCTTGGGATTCTTCAGGTC
CACCTTGAAAAGCCAGCCCTTCTCATAGCAACTGCTGTTGACTAGGGCCG
GTGTGTCCTCCACCTCGGCATTCTTTTCAATTACCTTGCCACTAACGGGT
GAATACACCTCGCTAGCCGCTTTAACGCTCTCCAGGGCCCCACATTCGTC
ATCCTGCTTGAGTTCCGTGCCGGGTTCTGGGAGTTGGGCGAACACCACAT
CCCCGAGAGCCTCCTGGGCGTAGCTGGAGATGCCTACTATGGCATTGCTG
CCGGATACCACCTCCACCCACTCGTGTTTGTTTGTGTATCGGCGTTCTTT
GGCTAGAAGGCTTGTCAGGTGAATGGCGCGAGCCTGGACGGCGCCAAGGG
GCGTGACACTAAGCTGGCGGGCGGCCTGCAGCCCAATCCTTGCGAATTTC
GTTATGAATACCATGTCGACTGATAACT

BS06375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7758-PA 498 ppl-RA 1..498 514..17 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 900 CG7758-RA 205..704 514..15 2500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21280850..21281131 117..398 1410 100 Plus
3L 28110227 3L 21281185..21281302 397..514 590 100 Plus
3L 28110227 3L 21280687..21280790 15..118 520 100 Plus
Blast to na_te.dros performed 2015-01-31 16:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2135..2182 421..374 105 68.8 Minus
TART-A 13424 TART-A 13424bp 2702..2749 421..374 105 68.8 Minus
TART-C 11124 TART-C TARTC 11124bp 1379..1426 421..374 105 68.8 Minus

BS06375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:39:07 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:36 Download gff for BS06375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7758-PA 1..498 17..514 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:33 Download gff for BS06375.3prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..704 15..514 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:50 Download gff for BS06375.3prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..704 15..514 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:50 Download gff for BS06375.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21280851..21281129 118..396 100 <- Plus
3L 21280687..21280789 15..117 100 <- Plus
3L 21281185..21281302 397..514 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:33 Download gff for BS06375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21273787..21273889 15..117 100 <- Plus
arm_3L 21273951..21274229 118..396 100 <- Plus
arm_3L 21274285..21274402 397..514 100   Plus

BS06375.5prime Sequence

528 bp (527 high quality bases) assembled on 2005-12-03

> BS06375.5prime
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACTAGAAGCTTTCTAGACC

BS06375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7758-PA 498 ppl-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 900 CG7758-RA 205..704 17..516 2500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21280850..21281131 414..133 1410 100 Minus
3L 28110227 3L 21281185..21281302 134..17 590 100 Minus
3L 28110227 3L 21280687..21280790 516..413 520 100 Minus
Blast to na_te.dros performed 2015-02-12 06:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2135..2182 110..157 105 68.8 Plus
TART-A 13424 TART-A 13424bp 2702..2749 110..157 105 68.8 Plus
TART-C 11124 TART-C TARTC 11124bp 1379..1426 110..157 105 68.8 Plus

BS06375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:39:08 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:38 Download gff for BS06375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7758-PA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:18:56 Download gff for BS06375.5prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..704 17..516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:50 Download gff for BS06375.5prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..704 17..516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:50 Download gff for BS06375.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21280687..21280789 414..516 100 <- Minus
3L 21280851..21281129 135..413 100 <- Minus
3L 21281185..21281302 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:18:56 Download gff for BS06375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21273787..21273889 414..516 100 <- Minus
arm_3L 21273951..21274229 135..413 100 <- Minus
arm_3L 21274285..21274402 17..134 100   Minus

BS06375.complete Sequence

530 bp (530 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635466

> BS06375.complete
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACTAGAAGCTTTCTAGACCAT

BS06375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 498 CG7758-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 900 CG7758-RA 205..704 17..516 2500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21280850..21281131 414..133 1410 100 Minus
3L 28110227 3L 21281185..21281302 134..17 590 100 Minus
3L 28110227 3L 21280687..21280790 516..413 520 100 Minus
Blast to na_te.dros performed 2014-11-28 00:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2135..2182 110..157 105 68.8 Plus
TART-A 13424 TART-A 13424bp 2702..2749 110..157 105 68.8 Plus
TART-C 11124 TART-C TARTC 11124bp 1379..1426 110..157 105 68.8 Plus

BS06375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:36 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:04 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 200..699 17..516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:47 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..702 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:37 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 200..699 17..516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:49 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..702 17..514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:49 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21280689..21280789 414..514 100 <- Minus
3L 21280851..21281129 135..413 100 <- Minus
3L 21281185..21281302 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:47 Download gff for BS06375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21273789..21273889 414..514 100 <- Minus
arm_3L 21273951..21274229 135..413 100 <- Minus
arm_3L 21274285..21274402 17..134 100   Minus

BS06375.pep Sequence

Translation from 16 to 513

> BS06375.pep
MVFITKFARIGLQAARQLSVTPLGAVQARAIHLTSLLAKERRYTNKHEWV
EVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAA
SEVYSPVSGKVIEKNAEVEDTPALVNSSCYEKGWLFKVDLKNPKELEALM
TEDQYKAFLSSSGDH*

BS06375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-PA 165 CG7758-PA 1..165 1..165 832 100 Plus