Clone Sequence Records
BS06375.3prime Sequence
528 bp (527 high quality bases) assembled on 2005-12-03
> BS06375.3prime
ATGGTCTAGAAAGCTTCTAGTGATCCCCACTGCTGCTCAGGAAGGCTTTG
TACTGATCCTCGGTCATAAGGGCTTCGAGTTCCTTGGGATTCTTCAGGTC
CACCTTGAAAAGCCAGCCCTTCTCATAGCAACTGCTGTTGACTAGGGCCG
GTGTGTCCTCCACCTCGGCATTCTTTTCAATTACCTTGCCACTAACGGGT
GAATACACCTCGCTAGCCGCTTTAACGCTCTCCAGGGCCCCACATTCGTC
ATCCTGCTTGAGTTCCGTGCCGGGTTCTGGGAGTTGGGCGAACACCACAT
CCCCGAGAGCCTCCTGGGCGTAGCTGGAGATGCCTACTATGGCATTGCTG
CCGGATACCACCTCCACCCACTCGTGTTTGTTTGTGTATCGGCGTTCTTT
GGCTAGAAGGCTTGTCAGGTGAATGGCGCGAGCCTGGACGGCGCCAAGGG
GCGTGACACTAAGCTGGCGGGCGGCCTGCAGCCCAATCCTTGCGAATTTC
GTTATGAATACCATGTCGACTGATAACT
BS06375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7758-PA | 498 | ppl-RA | 1..498 | 514..17 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 900 | CG7758-RA | 205..704 | 514..15 | 2500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21280850..21281131 | 117..398 | 1410 | 100 | Plus |
3L | 28110227 | 3L | 21281185..21281302 | 397..514 | 590 | 100 | Plus |
3L | 28110227 | 3L | 21280687..21280790 | 15..118 | 520 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 16:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 421..374 | 105 | 68.8 | Minus |
TART-A | 13424 | TART-A 13424bp | 2702..2749 | 421..374 | 105 | 68.8 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 421..374 | 105 | 68.8 | Minus |
BS06375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:39:07 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:36 Download gff for
BS06375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7758-PA | 1..498 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:33 Download gff for
BS06375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..704 | 15..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:50 Download gff for
BS06375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..704 | 15..514 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:50 Download gff for
BS06375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21280851..21281129 | 118..396 | 100 | <- | Plus |
3L | 21280687..21280789 | 15..117 | 100 | <- | Plus |
3L | 21281185..21281302 | 397..514 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:33 Download gff for
BS06375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21273787..21273889 | 15..117 | 100 | <- | Plus |
arm_3L | 21273951..21274229 | 118..396 | 100 | <- | Plus |
arm_3L | 21274285..21274402 | 397..514 | 100 | | Plus |
BS06375.5prime Sequence
528 bp (527 high quality bases) assembled on 2005-12-03
> BS06375.5prime
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACTAGAAGCTTTCTAGACC
BS06375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7758-PA | 498 | ppl-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 900 | CG7758-RA | 205..704 | 17..516 | 2500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21280850..21281131 | 414..133 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 21281185..21281302 | 134..17 | 590 | 100 | Minus |
3L | 28110227 | 3L | 21280687..21280790 | 516..413 | 520 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 110..157 | 105 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 2702..2749 | 110..157 | 105 | 68.8 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 110..157 | 105 | 68.8 | Plus |
BS06375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:39:08 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:38 Download gff for
BS06375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7758-PA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:18:56 Download gff for
BS06375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..704 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:50 Download gff for
BS06375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..704 | 17..516 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:50 Download gff for
BS06375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21280687..21280789 | 414..516 | 100 | <- | Minus |
3L | 21280851..21281129 | 135..413 | 100 | <- | Minus |
3L | 21281185..21281302 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:18:56 Download gff for
BS06375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21273787..21273889 | 414..516 | 100 | <- | Minus |
arm_3L | 21273951..21274229 | 135..413 | 100 | <- | Minus |
arm_3L | 21274285..21274402 | 17..134 | 100 | | Minus |
BS06375.complete Sequence
530 bp (530 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635466
> BS06375.complete
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACTAGAAGCTTTCTAGACCAT
BS06375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 498 | CG7758-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 900 | CG7758-RA | 205..704 | 17..516 | 2500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21280850..21281131 | 414..133 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 21281185..21281302 | 134..17 | 590 | 100 | Minus |
3L | 28110227 | 3L | 21280687..21280790 | 516..413 | 520 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 110..157 | 105 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 2702..2749 | 110..157 | 105 | 68.8 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 110..157 | 105 | 68.8 | Plus |
BS06375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:36 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:04 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 200..699 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:47 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..702 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:37 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 200..699 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:49 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..702 | 17..514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:49 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21280689..21280789 | 414..514 | 100 | <- | Minus |
3L | 21280851..21281129 | 135..413 | 100 | <- | Minus |
3L | 21281185..21281302 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:47 Download gff for
BS06375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21273789..21273889 | 414..514 | 100 | <- | Minus |
arm_3L | 21273951..21274229 | 135..413 | 100 | <- | Minus |
arm_3L | 21274285..21274402 | 17..134 | 100 | | Minus |
BS06375.pep Sequence
Translation from 16 to 513
> BS06375.pep
MVFITKFARIGLQAARQLSVTPLGAVQARAIHLTSLLAKERRYTNKHEWV
EVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAA
SEVYSPVSGKVIEKNAEVEDTPALVNSSCYEKGWLFKVDLKNPKELEALM
TEDQYKAFLSSSGDH*
BS06375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-PA | 165 | CG7758-PA | 1..165 | 1..165 | 832 | 100 | Plus |