Clone BS06378 Report

Search the DGRC for BS06378

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG5770-RA
Protein status:BS06378.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06378.3prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS06378.3prime
ATGGTCTAGAAAGCTTTCAAAGGCCAAATAGGAAACCCCCGTCTGTGGTA
GAGGTAGTTTGAGGGGCGGCTGATGAGGATGTGGCGGTAGTGGTGGGCAC
TCCATTCTTGAGGCAATTGTCCAGCAGATCGTAGGTGGCAGCTGTATCCC
GGACGTAGTTGTTCTGCGTTGTGTTGGTGCACTGGTACTCGGTGTCCTGG
ATGGCTTGGATGCCCGAGCTGAAGGAGGTGGCCGAGCTGGCAGCGTTGCT
GGCCAGGTTGTAGATCACAGAGACGTCATTATCAGCAGCATTCGCGTAGC
AGTTGAAGAAGTTTGCGGTATCATTGTTGCTGTCGCAGGCGGTAAAGGCA
CTGCAGAGTGTTGAAACGTCGGACTGATAGGTCTTCTGCTGCTGCTCCGC
CTGGGCGGTCAAATTGGCGATCTGGGCATTGGCGGTGGTGATGCAGTCCT
GATAGGAACTCGAGAAAGTGGCAGCCACTTGATTCAGCATAGGCATGTAT
AAGTTGAAGCACTGCGTGGTCATATCCTCGGAAACAAATGTATCCAGACT
GCGAGCATGCACCAAATACTGATCCAAGGCACTCTGGATCTGGTTATTGG
GCTTGGCGTTGGCCGCCAAAACGCTGGCGAAGATAAGCACGGTGCACAGA
ATATTCATGTCGACTGATAACT

BS06378.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 642 CG5770-RA 1..642 658..17 3210 100 Minus
CG5767-PA 762 CG5767-RA 451..547 214..118 335 93.8 Minus
CG5767-PA 762 CG5767-RA 29..63 630..596 150 97.1 Minus
CG5767-PA 762 CG5767-RA 185..236 480..429 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 910 CG5770-RA 22..669 664..17 3225 99.8 Minus
CG5767-RA 854 CG5767-RA 41..617 660..90 1335 82.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044619..18044940 286..607 1610 100 Plus
2R 25286936 2R 18044287..18044556 17..286 1350 100 Plus
2R 25286936 2R 18047002..18047300 288..586 670 81.6 Plus
2R 25286936 2R 18046623..18046811 90..278 540 85.7 Plus
2R 25286936 2R 18044995..18045052 607..664 275 98.3 Plus
Blast to na_te.dros performed on 2015-02-10 18:23:21 has no hits.

BS06378.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:13 Download gff for BS06378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:45 Download gff for BS06378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:22 Download gff for BS06378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 17..677 11..672 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:52 Download gff for BS06378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 15..675 11..672 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:52 Download gff for BS06378.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18044281..18044556 11..286 98 <- Plus
2R 18044620..18044940 287..607 100 <- Plus
2R 18044996..18045058 608..672 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:22 Download gff for BS06378.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931786..13932061 11..286 98 <- Plus
arm_2R 13932125..13932445 287..607 100 <- Plus
arm_2R 13932501..13932563 608..672 92   Plus

BS06378.5prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS06378.5prime
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTTGAAAGCTTTCTAGACC

BS06378.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 642 CG5770-RA 1..642 17..658 3210 100 Plus
CG5767-PA 762 CG5767-RA 451..547 461..557 335 93.8 Plus
CG5767-PA 762 CG5767-RA 29..63 45..79 150 97.1 Plus
CG5767-PA 762 CG5767-RA 185..236 195..246 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 910 CG5770-RA 22..669 11..658 3225 99.8 Plus
CG5767-RA 854 CG5767-RA 41..617 15..585 1335 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044619..18044940 389..68 1610 100 Minus
2R 25286936 2R 18044287..18044556 658..389 1350 100 Minus
2R 25286936 2R 18047002..18047300 387..89 670 81.6 Minus
2R 25286936 2R 18046623..18046811 585..397 540 85.7 Minus
2R 25286936 2R 18044995..18045052 68..11 275 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 00:56:58 has no hits.

BS06378.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:14 Download gff for BS06378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:47 Download gff for BS06378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:05 Download gff for BS06378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 16..677 1..664 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:41 Download gff for BS06378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 14..675 1..664 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:41 Download gff for BS06378.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18044281..18044556 389..664 98 <- Minus
2R 18044620..18044940 68..388 100 <- Minus
2R 18044996..18045060 1..67 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:05 Download gff for BS06378.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931786..13932061 389..664 98 <- Minus
arm_2R 13932125..13932445 68..388 100 <- Minus
arm_2R 13932501..13932565 1..67 92   Minus

BS06378.complete Sequence

674 bp (674 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635467

> BS06378.complete
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTTGAAAGCTTTCTAGACCAT

BS06378.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 642 CG5770-PA 1..642 17..658 3210 100 Plus
CG5767-RA 762 CG5767-PA 1..575 17..585 1280 81.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 910 CG5770-RA 22..669 11..658 3225 99.8 Plus
CG5767-RA 854 CG5767-RA 41..617 15..585 1290 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044619..18044940 389..68 1610 100 Minus
2R 25286936 2R 18044287..18044556 658..389 1350 100 Minus
2R 25286936 2R 18047002..18047300 387..89 670 81.6 Minus
2R 25286936 2R 18046623..18046811 585..397 540 85.7 Minus
2R 25286936 2R 18044995..18045052 68..11 275 98.3 Minus
Blast to na_te.dros performed on 2014-11-27 10:32:09 has no hits.

BS06378.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:49 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:16 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..662 4..664 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:31 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 30..670 17..657 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:49 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..662 4..664 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:27 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 28..668 17..657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:27 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18044288..18044556 389..657 100 <- Minus
2R 18044620..18044940 68..388 100 <- Minus
2R 18044996..18045046 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:31 Download gff for BS06378.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931793..13932061 389..657 100 <- Minus
arm_2R 13932125..13932445 68..388 100 <- Minus
arm_2R 13932501..13932551 17..67 100   Minus

BS06378.pep Sequence

Translation from 16 to 657

> BS06378.pep
MNILCTVLIFASVLAANAKPNNQIQSALDQYLVHARSLDTFVSEDMTTQC
FNLYMPMLNQVAATFSSSYQDCITTANAQIANLTAQAEQQQKTYQSDVST
LCSAFTACDSNNDTANFFNCYANAADNDVSVIYNLASNAASSATSFSSGI
QAIQDTEYQCTNTTQNNYVRDTAATYDLLDNCLKNGVPTTTATSSSAAPQ
TTSTTDGGFLFGL*

BS06378.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 213 CG5770-PA 1..213 1..213 1091 100 Plus
CG5767-PA 253 CG5767-PA 1..204 1..206 800 75 Plus
CG10911-PA 359 CG10911-PA 5..207 4..206 259 26.2 Plus
CG34005-PC 185 CG34005-PC 5..180 7..184 208 27.9 Plus
CG34005-PB 185 CG34005-PB 5..180 7..184 208 27.9 Plus