Clone Sequence Records
BS06378.3prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06378.3prime
ATGGTCTAGAAAGCTTTCAAAGGCCAAATAGGAAACCCCCGTCTGTGGTA
GAGGTAGTTTGAGGGGCGGCTGATGAGGATGTGGCGGTAGTGGTGGGCAC
TCCATTCTTGAGGCAATTGTCCAGCAGATCGTAGGTGGCAGCTGTATCCC
GGACGTAGTTGTTCTGCGTTGTGTTGGTGCACTGGTACTCGGTGTCCTGG
ATGGCTTGGATGCCCGAGCTGAAGGAGGTGGCCGAGCTGGCAGCGTTGCT
GGCCAGGTTGTAGATCACAGAGACGTCATTATCAGCAGCATTCGCGTAGC
AGTTGAAGAAGTTTGCGGTATCATTGTTGCTGTCGCAGGCGGTAAAGGCA
CTGCAGAGTGTTGAAACGTCGGACTGATAGGTCTTCTGCTGCTGCTCCGC
CTGGGCGGTCAAATTGGCGATCTGGGCATTGGCGGTGGTGATGCAGTCCT
GATAGGAACTCGAGAAAGTGGCAGCCACTTGATTCAGCATAGGCATGTAT
AAGTTGAAGCACTGCGTGGTCATATCCTCGGAAACAAATGTATCCAGACT
GCGAGCATGCACCAAATACTGATCCAAGGCACTCTGGATCTGGTTATTGG
GCTTGGCGTTGGCCGCCAAAACGCTGGCGAAGATAAGCACGGTGCACAGA
ATATTCATGTCGACTGATAACT
BS06378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-PA | 642 | CG5770-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
CG5767-PA | 762 | CG5767-RA | 451..547 | 214..118 | 335 | 93.8 | Minus |
CG5767-PA | 762 | CG5767-RA | 29..63 | 630..596 | 150 | 97.1 | Minus |
CG5767-PA | 762 | CG5767-RA | 185..236 | 480..429 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 910 | CG5770-RA | 22..669 | 664..17 | 3225 | 99.8 | Minus |
CG5767-RA | 854 | CG5767-RA | 41..617 | 660..90 | 1335 | 82.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18044619..18044940 | 286..607 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 18044287..18044556 | 17..286 | 1350 | 100 | Plus |
2R | 25286936 | 2R | 18047002..18047300 | 288..586 | 670 | 81.6 | Plus |
2R | 25286936 | 2R | 18046623..18046811 | 90..278 | 540 | 85.7 | Plus |
2R | 25286936 | 2R | 18044995..18045052 | 607..664 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:23:21 has no hits.
BS06378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:13 Download gff for
BS06378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:45 Download gff for
BS06378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:22 Download gff for
BS06378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 17..677 | 11..672 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:52 Download gff for
BS06378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 15..675 | 11..672 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:52 Download gff for
BS06378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18044281..18044556 | 11..286 | 98 | <- | Plus |
2R | 18044620..18044940 | 287..607 | 100 | <- | Plus |
2R | 18044996..18045058 | 608..672 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:22 Download gff for
BS06378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13931786..13932061 | 11..286 | 98 | <- | Plus |
arm_2R | 13932125..13932445 | 287..607 | 100 | <- | Plus |
arm_2R | 13932501..13932563 | 608..672 | 92 | | Plus |
BS06378.5prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06378.5prime
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTTGAAAGCTTTCTAGACC
BS06378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-PA | 642 | CG5770-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG5767-PA | 762 | CG5767-RA | 451..547 | 461..557 | 335 | 93.8 | Plus |
CG5767-PA | 762 | CG5767-RA | 29..63 | 45..79 | 150 | 97.1 | Plus |
CG5767-PA | 762 | CG5767-RA | 185..236 | 195..246 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 910 | CG5770-RA | 22..669 | 11..658 | 3225 | 99.8 | Plus |
CG5767-RA | 854 | CG5767-RA | 41..617 | 15..585 | 1335 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18044619..18044940 | 389..68 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 18044287..18044556 | 658..389 | 1350 | 100 | Minus |
2R | 25286936 | 2R | 18047002..18047300 | 387..89 | 670 | 81.6 | Minus |
2R | 25286936 | 2R | 18046623..18046811 | 585..397 | 540 | 85.7 | Minus |
2R | 25286936 | 2R | 18044995..18045052 | 68..11 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:56:58 has no hits.
BS06378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:14 Download gff for
BS06378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:47 Download gff for
BS06378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:05 Download gff for
BS06378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 16..677 | 1..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:41 Download gff for
BS06378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 14..675 | 1..664 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:41 Download gff for
BS06378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18044281..18044556 | 389..664 | 98 | <- | Minus |
2R | 18044620..18044940 | 68..388 | 100 | <- | Minus |
2R | 18044996..18045060 | 1..67 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:05 Download gff for
BS06378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13931786..13932061 | 389..664 | 98 | <- | Minus |
arm_2R | 13932125..13932445 | 68..388 | 100 | <- | Minus |
arm_2R | 13932501..13932565 | 1..67 | 92 | | Minus |
BS06378.complete Sequence
674 bp (674 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635467
> BS06378.complete
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTTGAAAGCTTTCTAGACCAT
BS06378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 642 | CG5770-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG5767-RA | 762 | CG5767-PA | 1..575 | 17..585 | 1280 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 910 | CG5770-RA | 22..669 | 11..658 | 3225 | 99.8 | Plus |
CG5767-RA | 854 | CG5767-RA | 41..617 | 15..585 | 1290 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18044619..18044940 | 389..68 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 18044287..18044556 | 658..389 | 1350 | 100 | Minus |
2R | 25286936 | 2R | 18047002..18047300 | 387..89 | 670 | 81.6 | Minus |
2R | 25286936 | 2R | 18046623..18046811 | 585..397 | 540 | 85.7 | Minus |
2R | 25286936 | 2R | 18044995..18045052 | 68..11 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:32:09 has no hits.
BS06378.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:49 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:16 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 1..662 | 4..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:31 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 30..670 | 17..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:49 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 1..662 | 4..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:27 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 28..668 | 17..657 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:27 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18044288..18044556 | 389..657 | 100 | <- | Minus |
2R | 18044620..18044940 | 68..388 | 100 | <- | Minus |
2R | 18044996..18045046 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:31 Download gff for
BS06378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13931793..13932061 | 389..657 | 100 | <- | Minus |
arm_2R | 13932125..13932445 | 68..388 | 100 | <- | Minus |
arm_2R | 13932501..13932551 | 17..67 | 100 | | Minus |
BS06378.pep Sequence
Translation from 16 to 657
> BS06378.pep
MNILCTVLIFASVLAANAKPNNQIQSALDQYLVHARSLDTFVSEDMTTQC
FNLYMPMLNQVAATFSSSYQDCITTANAQIANLTAQAEQQQKTYQSDVST
LCSAFTACDSNNDTANFFNCYANAADNDVSVIYNLASNAASSATSFSSGI
QAIQDTEYQCTNTTQNNYVRDTAATYDLLDNCLKNGVPTTTATSSSAAPQ
TTSTTDGGFLFGL*
BS06378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-PA | 213 | CG5770-PA | 1..213 | 1..213 | 1091 | 100 | Plus |
CG5767-PA | 253 | CG5767-PA | 1..204 | 1..206 | 800 | 75 | Plus |
CG10911-PA | 359 | CG10911-PA | 5..207 | 4..206 | 259 | 26.2 | Plus |
CG34005-PC | 185 | CG34005-PC | 5..180 | 7..184 | 208 | 27.9 | Plus |
CG34005-PB | 185 | CG34005-PB | 5..180 | 7..184 | 208 | 27.9 | Plus |