Clone Sequence Records
BS06383.3prime Sequence
878 bp (814 high quality bases) assembled on 2005-12-03
> BS06383.3prime
ATGGTCTAGAAAGCTTTTAGTTAATCATGCCGAAGGGAGCCTTGCTGTTC
ACGGGCACATAGAAGTCACCCTCGACCATGTAGGCGTTGGTATCAGCTCC
CATGCGAACGCTGGAGTAGGTGCTTCCGCACTCCTTGGCAACGGCTTCCT
CGTAGTCTCCGCACTTCATGGTTCCGAAGTTGTCCTCGGAGACGGCCTCG
GCGTAGTAGGTTGTTGAGCGTCCGTGGGAGCAGGCTCCAGTCACATCCAG
AGGGCAGCCGGGCTGGGTCTTTCCTCCGTTGGGATAGAAAGCTCCCTTGC
CGATGGGCTTCAGGAATCCCAGAGTGCCACCGTTGGTCTGGATAGACTCC
ACATACCAGGCATCGTCGGAATTCAGACGCTTGTTGGGCTTGTTGTAGCT
GAAGAGGGGCAGGGCGGGGTCCAGACCAATGATGGTGTGCACCTGGCCGT
CGGTGTTCTTGCCGGCATATCCAGCCACATGGGCGCCCAAGCTGTGACCA
ATCACATATACGTCATTAAGATTCAGACCGTGGTTGTCCTTCAGGAAGTT
AATCATCTTGGCAACCTTCTTTCCGGTGGCAGCGACAGCCATAACAGAGG
TGGCATAATCCACGGAACGGGCACGGGCCCAGTCAACAACGATCACGTTG
TAGTCTCCCTTAGAGAGGAATGCCTTGCGGATGTCCGAGTTCATGCTGTT
CAAGTAGCTCTGGGTCCAGCCGTGGATCACGAAACGGGTGGGGTGAGCAG
GGTTGAAGTTGGACTTGGAAATGGACTTGGTAGTGGCGTAGATGTGCTTG
CTGCTCGAGGGGTTCTTGGGCGTGAAGAGGTAGAAGTTCACGGGAACGGT
GGTCAAGCACGGCCCTCAAGCTTCTCCT
BS06383.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-PA | 1026 | CG6271-RA | 185..1026 | 858..17 | 4210 | 100 | Minus |
CG6277-PA | 1026 | CG6277-RA | 538..785 | 505..258 | 1140 | 98.3 | Minus |
CG6277-PA | 1026 | CG6277-RA | 800..1026 | 243..17 | 960 | 96.9 | Minus |
CG6277-PA | 1026 | CG6277-RA | 385..522 | 658..521 | 490 | 94.2 | Minus |
CG6295-PA | 1017 | CG6295-RA | 682..776 | 352..258 | 300 | 92.6 | Minus |
CG6283-PA | 1020 | CG6283-RA | 945..1009 | 92..28 | 250 | 95.3 | Minus |
CG17191-PA | 1014 | CG17191-RA | 922..980 | 109..51 | 245 | 96.6 | Minus |
CG6283-PA | 1020 | CG6283-RA | 880..941 | 157..96 | 235 | 95.1 | Minus |
CG6283-PA | 1020 | CG6283-RA | 688..779 | 349..258 | 235 | 90.2 | Minus |
CG6295-PA | 1017 | CG6295-RA | 584..639 | 450..395 | 230 | 96.4 | Minus |
CG6283-PA | 1020 | CG6283-RA | 373..425 | 661..609 | 190 | 94.3 | Minus |
CG6283-PA | 1020 | CG6283-RA | 828..876 | 209..161 | 145 | 91.8 | Minus |
CG17191-PA | 1014 | CG17191-RA | 367..400 | 661..628 | 145 | 97 | Minus |
CG6277-PA | 1026 | CG6277-RA | 313..339 | 730..704 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 185..1047 | 878..17 | 4290 | 99.9 | Minus |
CG6277-RA | 1085 | CG6277-RA | 215..1056 | 858..17 | 2950 | 90 | Minus |
CG6283-RA | 1083 | CG6283-RA | 319..1039 | 740..23 | 1435 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27024993..27025855 | 17..878 | 4265 | 99.9 | Plus |
3R | 32079331 | 3R | 27022100..27022941 | 17..858 | 2950 | 90 | Plus |
3R | 32079331 | 3R | 27020282..27021002 | 23..740 | 1410 | 80 | Plus |
3R | 32079331 | 3R | 27005957..27006439 | 26..505 | 985 | 80.7 | Plus |
3R | 32079331 | 3R | 27018673..27019142 | 30..496 | 560 | 75.1 | Plus |
3R | 32079331 | 3R | 27017226..27017623 | 30..427 | 310 | 71.9 | Plus |
3R | 32079331 | 3R | 27019251..27019307 | 605..661 | 195 | 89.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:59:51 has no hits.
BS06383.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:21 Download gff for
BS06383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 164..1026 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:58 Download gff for
BS06383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 164..1026 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:43 Download gff for
BS06383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 185..1052 | 12..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:13 Download gff for
BS06383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 185..1052 | 12..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:13 Download gff for
BS06383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27024988..27025855 | 12..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:43 Download gff for
BS06383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22850710..22851577 | 12..878 | 99 | | Plus |
BS06383.5prime Sequence
783 bp (780 high quality bases) assembled on 2005-12-03
> BS06383.5prime
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGG
BS06383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-PA | 1026 | CG6271-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
CG6277-PA | 1026 | CG6277-RA | 538..767 | 554..783 | 1050 | 98.2 | Plus |
CG6277-PA | 1026 | CG6277-RA | 385..522 | 401..538 | 490 | 94.2 | Plus |
CG6295-PA | 1017 | CG6295-RA | 682..758 | 707..783 | 235 | 92.2 | Plus |
CG6295-PA | 1017 | CG6295-RA | 584..639 | 609..664 | 230 | 96.4 | Plus |
CG6283-PA | 1020 | CG6283-RA | 688..758 | 710..780 | 205 | 91.5 | Plus |
CG6283-PA | 1020 | CG6283-RA | 373..425 | 398..450 | 190 | 94.3 | Plus |
CG6277-PA | 1026 | CG6277-RA | 59..105 | 75..121 | 160 | 93.6 | Plus |
CG17191-PA | 1014 | CG17191-RA | 367..400 | 398..431 | 145 | 97 | Plus |
CG6277-PA | 1026 | CG6277-RA | 1..48 | 17..64 | 140 | 91.6 | Plus |
CG6277-PA | 1026 | CG6277-RA | 313..339 | 329..355 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 22..788 | 17..783 | 3835 | 100 | Plus |
CG6277-RA | 1085 | CG6277-RA | 31..797 | 17..783 | 2290 | 86.6 | Plus |
CG6283-RA | 1083 | CG6283-RA | 319..783 | 319..780 | 710 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27025252..27025979 | 783..56 | 3640 | 100 | Minus |
3R | 32079331 | 3R | 27022359..27023067 | 783..75 | 2165 | 87 | Minus |
3R | 32079331 | 3R | 27020538..27021002 | 780..319 | 685 | 77 | Minus |
3R | 32079331 | 3R | 27006207..27006439 | 783..554 | 605 | 85 | Minus |
3R | 32079331 | 3R | 27017480..27017623 | 775..632 | 240 | 77.8 | Minus |
3R | 32079331 | 3R | 27026049..27026088 | 56..17 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27019251..27019307 | 454..398 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:56:49 has no hits.
BS06383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:22 Download gff for
BS06383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:00 Download gff for
BS06383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:13 Download gff for
BS06383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..788 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:50:30 Download gff for
BS06383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..788 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:50:30 Download gff for
BS06383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27025252..27025978 | 57..783 | 100 | <- | Minus |
3R | 27026049..27026088 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:13 Download gff for
BS06383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22850974..22851700 | 57..783 | 100 | <- | Minus |
arm_3R | 22851771..22851810 | 17..56 | 100 | | Minus |
BS06383.complete Sequence
1058 bp (1058 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635468
> BS06383.complete
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCG
GCTGCCCTCTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCAACAACC
TACTACGCCGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGG
AGACTACGAGGAAGCCGTTGCCAAGGAGTGCGGAAGCACCTACTCCAGCG
TTCGCATGGGAGCTGATACCAACGCCTACATGGTCGAGGGTGACTTCTAT
GTGCCCGTGAACAGCAAGGCTCCCTTCGGCATGATTAACTAAAAGCTTTC
TAGACCAT
BS06383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1026 | CG6271-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG6277-RA | 1026 | CG6277-PA | 1..1026 | 17..1042 | 3375 | 88.6 | Plus |
CG6283-RA | 1020 | CG6283-PA | 294..1014 | 319..1036 | 1410 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 22..1047 | 17..1042 | 5130 | 100 | Plus |
CG6277-RA | 1085 | CG6277-RA | 31..1056 | 17..1042 | 3375 | 88.6 | Plus |
CG6283-RA | 1083 | CG6283-RA | 319..1039 | 319..1036 | 1410 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27024993..27025979 | 1042..56 | 4935 | 100 | Minus |
3R | 32079331 | 3R | 27022100..27023067 | 1042..75 | 3250 | 89 | Minus |
3R | 32079331 | 3R | 27020282..27021002 | 1036..319 | 1410 | 80 | Minus |
3R | 32079331 | 3R | 27005957..27006439 | 1033..554 | 985 | 80.7 | Minus |
3R | 32079331 | 3R | 27018673..27019142 | 1029..563 | 560 | 75.1 | Minus |
3R | 32079331 | 3R | 27017226..27017623 | 1029..632 | 310 | 71.9 | Minus |
3R | 32079331 | 3R | 27026049..27026088 | 56..17 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27019251..27019307 | 454..398 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:21:19 has no hits.
BS06383.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:52 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:20 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 13..1043 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:41 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..1045 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:52 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 13..1043 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:37 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..1045 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:37 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27024995..27025978 | 57..1040 | 100 | <- | Minus |
3R | 27026049..27026088 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:41 Download gff for
BS06383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22850717..22851700 | 57..1040 | 100 | <- | Minus |
arm_3R | 22851771..22851810 | 17..56 | 100 | | Minus |
BS06383.pep Sequence
Translation from 16 to 1041
> BS06383.pep
MKTFLILAIFALAASAYALEESERVNGENGWYVPQQDGSFEWVDMDVAEE
WMEAQEKLEGRGLTTVPVNFYLFTPKNPSSSKHIYATTKSISKSNFNPAH
PTRFVIHGWTQSYLNSMNSDIRKAFLSKGDYNVIVVDWARARSVDYATSV
MAVAATGKKVAKMINFLKDNHGLNLNDVYVIGHSLGAHVAGYAGKNTDGQ
VHTIIGLDPALPLFSYNKPNKRLNSDDAWYVESIQTNGGTLGFLKPIGKG
AFYPNGGKTQPGCPLDVTGACSHGRSTTYYAEAVSEDNFGTMKCGDYEEA
VAKECGSTYSSVRMGADTNAYMVEGDFYVPVNSKAPFGMIN*
BS06383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-PA | 341 | CG6271-PA | 1..341 | 1..341 | 1816 | 100 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..341 | 1..341 | 1626 | 88.9 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..338 | 1..340 | 1224 | 68.6 | Plus |
CG6295-PA | 338 | CG6295-PA | 2..338 | 1..341 | 1202 | 66.1 | Plus |
CG17191-PA | 337 | CG17191-PA | 1..336 | 1..340 | 1107 | 62.5 | Plus |