Clone BS06383 Report

Search the DGRC for BS06383

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG6271-RA
Protein status:BS06383.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06383.3prime Sequence

878 bp (814 high quality bases) assembled on 2005-12-03

> BS06383.3prime
ATGGTCTAGAAAGCTTTTAGTTAATCATGCCGAAGGGAGCCTTGCTGTTC
ACGGGCACATAGAAGTCACCCTCGACCATGTAGGCGTTGGTATCAGCTCC
CATGCGAACGCTGGAGTAGGTGCTTCCGCACTCCTTGGCAACGGCTTCCT
CGTAGTCTCCGCACTTCATGGTTCCGAAGTTGTCCTCGGAGACGGCCTCG
GCGTAGTAGGTTGTTGAGCGTCCGTGGGAGCAGGCTCCAGTCACATCCAG
AGGGCAGCCGGGCTGGGTCTTTCCTCCGTTGGGATAGAAAGCTCCCTTGC
CGATGGGCTTCAGGAATCCCAGAGTGCCACCGTTGGTCTGGATAGACTCC
ACATACCAGGCATCGTCGGAATTCAGACGCTTGTTGGGCTTGTTGTAGCT
GAAGAGGGGCAGGGCGGGGTCCAGACCAATGATGGTGTGCACCTGGCCGT
CGGTGTTCTTGCCGGCATATCCAGCCACATGGGCGCCCAAGCTGTGACCA
ATCACATATACGTCATTAAGATTCAGACCGTGGTTGTCCTTCAGGAAGTT
AATCATCTTGGCAACCTTCTTTCCGGTGGCAGCGACAGCCATAACAGAGG
TGGCATAATCCACGGAACGGGCACGGGCCCAGTCAACAACGATCACGTTG
TAGTCTCCCTTAGAGAGGAATGCCTTGCGGATGTCCGAGTTCATGCTGTT
CAAGTAGCTCTGGGTCCAGCCGTGGATCACGAAACGGGTGGGGTGAGCAG
GGTTGAAGTTGGACTTGGAAATGGACTTGGTAGTGGCGTAGATGTGCTTG
CTGCTCGAGGGGTTCTTGGGCGTGAAGAGGTAGAAGTTCACGGGAACGGT
GGTCAAGCACGGCCCTCAAGCTTCTCCT

BS06383.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-PA 1026 CG6271-RA 185..1026 858..17 4210 100 Minus
CG6277-PA 1026 CG6277-RA 538..785 505..258 1140 98.3 Minus
CG6277-PA 1026 CG6277-RA 800..1026 243..17 960 96.9 Minus
CG6277-PA 1026 CG6277-RA 385..522 658..521 490 94.2 Minus
CG6295-PA 1017 CG6295-RA 682..776 352..258 300 92.6 Minus
CG6283-PA 1020 CG6283-RA 945..1009 92..28 250 95.3 Minus
CG17191-PA 1014 CG17191-RA 922..980 109..51 245 96.6 Minus
CG6283-PA 1020 CG6283-RA 880..941 157..96 235 95.1 Minus
CG6283-PA 1020 CG6283-RA 688..779 349..258 235 90.2 Minus
CG6295-PA 1017 CG6295-RA 584..639 450..395 230 96.4 Minus
CG6283-PA 1020 CG6283-RA 373..425 661..609 190 94.3 Minus
CG6283-PA 1020 CG6283-RA 828..876 209..161 145 91.8 Minus
CG17191-PA 1014 CG17191-RA 367..400 661..628 145 97 Minus
CG6277-PA 1026 CG6277-RA 313..339 730..704 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1072 CG6271-RA 185..1047 878..17 4290 99.9 Minus
CG6277-RA 1085 CG6277-RA 215..1056 858..17 2950 90 Minus
CG6283-RA 1083 CG6283-RA 319..1039 740..23 1435 80.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27024993..27025855 17..878 4265 99.9 Plus
3R 32079331 3R 27022100..27022941 17..858 2950 90 Plus
3R 32079331 3R 27020282..27021002 23..740 1410 80 Plus
3R 32079331 3R 27005957..27006439 26..505 985 80.7 Plus
3R 32079331 3R 27018673..27019142 30..496 560 75.1 Plus
3R 32079331 3R 27017226..27017623 30..427 310 71.9 Plus
3R 32079331 3R 27019251..27019307 605..661 195 89.5 Plus
Blast to na_te.dros performed on 2015-02-12 00:59:51 has no hits.

BS06383.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:21 Download gff for BS06383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 164..1026 17..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:17:58 Download gff for BS06383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 164..1026 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:43 Download gff for BS06383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 185..1052 12..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:13 Download gff for BS06383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 185..1052 12..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:13 Download gff for BS06383.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27024988..27025855 12..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:43 Download gff for BS06383.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22850710..22851577 12..878 99   Plus

BS06383.5prime Sequence

783 bp (780 high quality bases) assembled on 2005-12-03

> BS06383.5prime
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGG

BS06383.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-PA 1026 CG6271-RA 1..767 17..783 3835 100 Plus
CG6277-PA 1026 CG6277-RA 538..767 554..783 1050 98.2 Plus
CG6277-PA 1026 CG6277-RA 385..522 401..538 490 94.2 Plus
CG6295-PA 1017 CG6295-RA 682..758 707..783 235 92.2 Plus
CG6295-PA 1017 CG6295-RA 584..639 609..664 230 96.4 Plus
CG6283-PA 1020 CG6283-RA 688..758 710..780 205 91.5 Plus
CG6283-PA 1020 CG6283-RA 373..425 398..450 190 94.3 Plus
CG6277-PA 1026 CG6277-RA 59..105 75..121 160 93.6 Plus
CG17191-PA 1014 CG17191-RA 367..400 398..431 145 97 Plus
CG6277-PA 1026 CG6277-RA 1..48 17..64 140 91.6 Plus
CG6277-PA 1026 CG6277-RA 313..339 329..355 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1072 CG6271-RA 22..788 17..783 3835 100 Plus
CG6277-RA 1085 CG6277-RA 31..797 17..783 2290 86.6 Plus
CG6283-RA 1083 CG6283-RA 319..783 319..780 710 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27025252..27025979 783..56 3640 100 Minus
3R 32079331 3R 27022359..27023067 783..75 2165 87 Minus
3R 32079331 3R 27020538..27021002 780..319 685 77 Minus
3R 32079331 3R 27006207..27006439 783..554 605 85 Minus
3R 32079331 3R 27017480..27017623 775..632 240 77.8 Minus
3R 32079331 3R 27026049..27026088 56..17 200 100 Minus
3R 32079331 3R 27019251..27019307 454..398 195 89.5 Minus
Blast to na_te.dros performed on 2015-02-09 22:56:49 has no hits.

BS06383.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:22 Download gff for BS06383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:00 Download gff for BS06383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:13 Download gff for BS06383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..788 17..783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:50:30 Download gff for BS06383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..788 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:50:30 Download gff for BS06383.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27025252..27025978 57..783 100 <- Minus
3R 27026049..27026088 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:13 Download gff for BS06383.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22850974..22851700 57..783 100 <- Minus
arm_3R 22851771..22851810 17..56 100   Minus

BS06383.complete Sequence

1058 bp (1058 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635468

> BS06383.complete
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCG
GCTGCCCTCTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCAACAACC
TACTACGCCGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGG
AGACTACGAGGAAGCCGTTGCCAAGGAGTGCGGAAGCACCTACTCCAGCG
TTCGCATGGGAGCTGATACCAACGCCTACATGGTCGAGGGTGACTTCTAT
GTGCCCGTGAACAGCAAGGCTCCCTTCGGCATGATTAACTAAAAGCTTTC
TAGACCAT

BS06383.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1026 CG6271-PA 1..1026 17..1042 5130 100 Plus
CG6277-RA 1026 CG6277-PA 1..1026 17..1042 3375 88.6 Plus
CG6283-RA 1020 CG6283-PA 294..1014 319..1036 1410 80 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1072 CG6271-RA 22..1047 17..1042 5130 100 Plus
CG6277-RA 1085 CG6277-RA 31..1056 17..1042 3375 88.6 Plus
CG6283-RA 1083 CG6283-RA 319..1039 319..1036 1410 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27024993..27025979 1042..56 4935 100 Minus
3R 32079331 3R 27022100..27023067 1042..75 3250 89 Minus
3R 32079331 3R 27020282..27021002 1036..319 1410 80 Minus
3R 32079331 3R 27005957..27006439 1033..554 985 80.7 Minus
3R 32079331 3R 27018673..27019142 1029..563 560 75.1 Minus
3R 32079331 3R 27017226..27017623 1029..632 310 71.9 Minus
3R 32079331 3R 27026049..27026088 56..17 200 100 Minus
3R 32079331 3R 27019251..27019307 454..398 195 89.5 Minus
Blast to na_te.dros performed on 2014-11-27 10:21:19 has no hits.

BS06383.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:52 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:20 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 13..1043 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:41 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..1045 17..1040 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:52 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 13..1043 17..1047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:37 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..1045 17..1040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:37 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27024995..27025978 57..1040 100 <- Minus
3R 27026049..27026088 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:41 Download gff for BS06383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22850717..22851700 57..1040 100 <- Minus
arm_3R 22851771..22851810 17..56 100   Minus

BS06383.pep Sequence

Translation from 16 to 1041

> BS06383.pep
MKTFLILAIFALAASAYALEESERVNGENGWYVPQQDGSFEWVDMDVAEE
WMEAQEKLEGRGLTTVPVNFYLFTPKNPSSSKHIYATTKSISKSNFNPAH
PTRFVIHGWTQSYLNSMNSDIRKAFLSKGDYNVIVVDWARARSVDYATSV
MAVAATGKKVAKMINFLKDNHGLNLNDVYVIGHSLGAHVAGYAGKNTDGQ
VHTIIGLDPALPLFSYNKPNKRLNSDDAWYVESIQTNGGTLGFLKPIGKG
AFYPNGGKTQPGCPLDVTGACSHGRSTTYYAEAVSEDNFGTMKCGDYEEA
VAKECGSTYSSVRMGADTNAYMVEGDFYVPVNSKAPFGMIN*

BS06383.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-PA 341 CG6271-PA 1..341 1..341 1816 100 Plus
CG6277-PA 341 CG6277-PA 1..341 1..341 1626 88.9 Plus
CG6283-PA 339 CG6283-PA 1..338 1..340 1224 68.6 Plus
CG6295-PA 338 CG6295-PA 2..338 1..341 1202 66.1 Plus
CG17191-PA 337 CG17191-PA 1..336 1..340 1107 62.5 Plus