Clone Sequence Records
BS06384.5prime Sequence
498 bp (497 high quality bases) assembled on 2005-12-03
> BS06384.5prime
GAAGTTATCAGTCGACATGAGGAAATTAGTTATATCCCTAGCTGTGCTAG
GACTAATATCCCTGGCCTTGGGTCACAATAATCCCTGGGAGCAGCAGCCC
ACTCCGATAAAGAAGGTGCCAGTGCCTGTTCCGGTGCCAGTTCCTGTGCC
AGTTCCTGTTCCTGTTTATCCCAAAGAAGGAGGTGGCGGAGGAGGTGGTA
GTGGCGGTGGTGGTGGTGGAGGTGGTGGCGCCGGCGGAGGAAGCGGAAGT
GGAGAAGGTGGCGGCGGAGCAATCGGCGGCACTTGCCCGCGTCCTTCTCC
CGAAGCTTTACGGTGCCTGCGGGAATGGGCCTGTCAGTACGTCATCCGGC
TGGATCTGCGCTGCCTGCTCACTTTAAATGGCAACCCATTGCTGGGCAAT
CTCATTTCCATACCCGGCATCACCGGAGGCGGCAGCAGCAGCGGCGGCGG
TGGCATCTTGGGTGGACTCCTGGGTGGCAAATAGAAGCTTTCTAGACC
BS06384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-PA | 468 | CG10853-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
CG32073-PA | 330 | CG32073-RA | 145..193 | 162..114 | 170 | 93.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-RA | 588 | CG10853-RA | 44..512 | 17..485 | 2345 | 100 | Plus |
CG32073-RB | 575 | CG32073-RB | 370..418 | 162..114 | 200 | 93.9 | Minus |
CG32073-RA | 369 | CG32073-RA | 164..212 | 162..114 | 200 | 93.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3948054..3948287 | 80..313 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 3948486..3948611 | 360..485 | 630 | 100 | Plus |
3L | 28110227 | 3L | 3947934..3947996 | 17..79 | 315 | 100 | Plus |
3L | 28110227 | 3L | 3948359..3948406 | 313..360 | 240 | 100 | Plus |
3L | 28110227 | 3L | 11107165..11107213 | 114..162 | 200 | 93.9 | Plus |
Blast to na_te.dros performed 2015-02-13 08:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8630..8685 | 420..478 | 116 | 71.2 | Plus |
BS06384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:25 Download gff for
BS06384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:03 Download gff for
BS06384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:47 Download gff for
BS06384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 41..512 | 14..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:37:22 Download gff for
BS06384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 41..512 | 14..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:37:22 Download gff for
BS06384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3947934..3947996 | 17..79 | 100 | -> | Plus |
3L | 3948054..3948287 | 80..313 | 100 | -> | Plus |
3L | 3948360..3948406 | 314..360 | 100 | -> | Plus |
3L | 3948487..3948611 | 361..485 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:47 Download gff for
BS06384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3947934..3947996 | 17..79 | 100 | -> | Plus |
arm_3L | 3948054..3948287 | 80..313 | 100 | -> | Plus |
arm_3L | 3948360..3948406 | 314..360 | 100 | -> | Plus |
arm_3L | 3948487..3948611 | 361..485 | 100 | | Plus |
BS06384.3prime Sequence
498 bp (497 high quality bases) assembled on 2005-12-03
> BS06384.3prime
ATGGTCTAGAAAGCTTCTATTTGCCACCCAGGAGTCCACCCAAGATGCCA
CCGCCGCCGCTGCTGCTGCCGCCTCCGGTGATGCCGGGTATGGAAATGAG
ATTGCCCAGCAATGGGTTGCCATTTAAAGTGAGCAGGCAGCGCAGATCCA
GCCGGATGACGTACTGACAGGCCCATTCCCGCAGGCACCGTAAAGCTTCG
GGAGAAGGACGCGGGCAAGTGCCGCCGATTGCTCCGCCGCCACCTTCTCC
ACTTCCGCTTCCTCCGCCGGCGCCACCACCTCCACCACCACCACCGCCAC
TACCACCTCCTCCGCCACCTCCTTCTTTGGGATAAACAGGAACAGGAACT
GGCACAGGAACTGGCACCGGAACAGGCACTGGCACCTTCTTTATCGGAGT
GGGCTGCTGCTCCCAGGGATTATTGTGACCCAAGGCCAGGGATATTAGTC
CTAGCACAGCTAGGGATATAACTAATTTCCTCATGTCGACTGATAACT
BS06384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-PA | 468 | CG10853-RA | 1..468 | 484..17 | 2340 | 100 | Minus |
CG32073-PA | 330 | CG32073-RA | 145..193 | 339..387 | 170 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-RA | 588 | CG10853-RA | 44..512 | 484..16 | 2345 | 100 | Minus |
CG32073-RB | 575 | CG32073-RB | 370..418 | 339..387 | 200 | 93.9 | Plus |
CG32073-RA | 369 | CG32073-RA | 164..212 | 339..387 | 200 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3948054..3948287 | 421..188 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 3948486..3948611 | 141..16 | 630 | 100 | Minus |
3L | 28110227 | 3L | 3947934..3947996 | 484..422 | 315 | 100 | Minus |
3L | 28110227 | 3L | 3948359..3948406 | 188..141 | 240 | 100 | Minus |
3L | 28110227 | 3L | 11107165..11107213 | 387..339 | 200 | 93.9 | Minus |
Blast to na_te.dros performed 2015-02-10 21:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8630..8685 | 81..23 | 116 | 71.2 | Minus |
BS06384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:24 Download gff for
BS06384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:01 Download gff for
BS06384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:48 Download gff for
BS06384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 41..512 | 16..487 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:33 Download gff for
BS06384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 41..512 | 16..487 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:33 Download gff for
BS06384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3947931..3947996 | 422..487 | 98 | -> | Minus |
3L | 3948054..3948287 | 188..421 | 100 | -> | Minus |
3L | 3948360..3948406 | 141..187 | 100 | -> | Minus |
3L | 3948487..3948611 | 16..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:48 Download gff for
BS06384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3947931..3947996 | 422..487 | 98 | -> | Minus |
arm_3L | 3948054..3948287 | 188..421 | 100 | -> | Minus |
arm_3L | 3948360..3948406 | 141..187 | 100 | -> | Minus |
arm_3L | 3948487..3948611 | 16..140 | 100 | | Minus |
BS06384.complete Sequence
500 bp (500 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635469
> BS06384.complete
GAAGTTATCAGTCGACATGAGGAAATTAGTTATATCCCTAGCTGTGCTAG
GACTAATATCCCTGGCCTTGGGTCACAATAATCCCTGGGAGCAGCAGCCC
ACTCCGATAAAGAAGGTGCCAGTGCCTGTTCCGGTGCCAGTTCCTGTGCC
AGTTCCTGTTCCTGTTTATCCCAAAGAAGGAGGTGGCGGAGGAGGTGGTA
GTGGCGGTGGTGGTGGTGGAGGTGGTGGCGCCGGCGGAGGAAGCGGAAGT
GGAGAAGGTGGCGGCGGAGCAATCGGCGGCACTTGCCCGCGTCCTTCTCC
CGAAGCTTTACGGTGCCTGCGGGAATGGGCCTGTCAGTACGTCATCCGGC
TGGATCTGCGCTGCCTGCTCACTTTAAATGGCAACCCATTGCTGGGCAAT
CTCATTTCCATACCCGGCATCACCGGAGGCGGCAGCAGCAGCGGCGGCGG
TGGCATCTTGGGTGGACTCCTGGGTGGCAAATAGAAGCTTTCTAGACCAT
BS06384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-RA | 468 | CG10853-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-RA | 588 | CG10853-RA | 44..512 | 17..485 | 2345 | 100 | Plus |
CG32073-RB | 575 | CG32073-RB | 370..418 | 162..114 | 200 | 93.9 | Minus |
CG32073-RA | 369 | CG32073-RA | 164..212 | 162..114 | 200 | 93.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3948054..3948287 | 80..313 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 3948486..3948611 | 360..485 | 630 | 100 | Plus |
3L | 28110227 | 3L | 3947934..3947996 | 17..79 | 315 | 100 | Plus |
3L | 28110227 | 3L | 3948359..3948406 | 313..360 | 240 | 100 | Plus |
3L | 28110227 | 3L | 11107165..11107213 | 114..162 | 200 | 93.9 | Plus |
Blast to na_te.dros performed 2014-11-27 20:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8630..8685 | 420..478 | 116 | 71.2 | Plus |
BS06384.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:53 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:21 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 20..491 | 14..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:29 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 44..505 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:53 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 20..491 | 14..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:04 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10853-RA | 44..505 | 17..478 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:04 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3948487..3948604 | 361..478 | 100 | | Plus |
3L | 3947934..3947996 | 17..79 | 100 | -> | Plus |
3L | 3948054..3948287 | 80..313 | 100 | -> | Plus |
3L | 3948360..3948406 | 314..360 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:29 Download gff for
BS06384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3947934..3947996 | 17..79 | 100 | -> | Plus |
arm_3L | 3948054..3948287 | 80..313 | 100 | -> | Plus |
arm_3L | 3948360..3948406 | 314..360 | 100 | -> | Plus |
arm_3L | 3948487..3948604 | 361..478 | 100 | | Plus |
BS06384.pep Sequence
Translation from 16 to 483
> BS06384.pep
MRKLVISLAVLGLISLALGHNNPWEQQPTPIKKVPVPVPVPVPVPVPVPV
YPKEGGGGGGGSGGGGGGGGGAGGGSGSGEGGGGAIGGTCPRPSPEALRC
LREWACQYVIRLDLRCLLTLNGNPLLGNLISIPGITGGGSSSGGGGILGG
LLGGK*
BS06384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10853-PA | 155 | CG10853-PA | 1..155 | 1..155 | 837 | 100 | Plus |
TwdlT-PA | 286 | CG5812-PA | 84..117 | 55..88 | 151 | 79.4 | Plus |
Ubx-PB | 346 | CG10388-PB | 107..202 | 55..154 | 150 | 41.2 | Plus |
CG1840-PB | 117 | CG1840-PB | 64..93 | 55..84 | 144 | 83.3 | Plus |
CG1840-PA | 118 | CG1840-PA | 65..94 | 55..84 | 144 | 83.3 | Plus |