Clone BS06384 Report

Search the DGRC for BS06384

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG10853-RA
Protein status:BS06384.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06384.5prime Sequence

498 bp (497 high quality bases) assembled on 2005-12-03

> BS06384.5prime
GAAGTTATCAGTCGACATGAGGAAATTAGTTATATCCCTAGCTGTGCTAG
GACTAATATCCCTGGCCTTGGGTCACAATAATCCCTGGGAGCAGCAGCCC
ACTCCGATAAAGAAGGTGCCAGTGCCTGTTCCGGTGCCAGTTCCTGTGCC
AGTTCCTGTTCCTGTTTATCCCAAAGAAGGAGGTGGCGGAGGAGGTGGTA
GTGGCGGTGGTGGTGGTGGAGGTGGTGGCGCCGGCGGAGGAAGCGGAAGT
GGAGAAGGTGGCGGCGGAGCAATCGGCGGCACTTGCCCGCGTCCTTCTCC
CGAAGCTTTACGGTGCCTGCGGGAATGGGCCTGTCAGTACGTCATCCGGC
TGGATCTGCGCTGCCTGCTCACTTTAAATGGCAACCCATTGCTGGGCAAT
CTCATTTCCATACCCGGCATCACCGGAGGCGGCAGCAGCAGCGGCGGCGG
TGGCATCTTGGGTGGACTCCTGGGTGGCAAATAGAAGCTTTCTAGACC

BS06384.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-PA 468 CG10853-RA 1..468 17..484 2340 100 Plus
CG32073-PA 330 CG32073-RA 145..193 162..114 170 93.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-RA 588 CG10853-RA 44..512 17..485 2345 100 Plus
CG32073-RB 575 CG32073-RB 370..418 162..114 200 93.9 Minus
CG32073-RA 369 CG32073-RA 164..212 162..114 200 93.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3948054..3948287 80..313 1170 100 Plus
3L 28110227 3L 3948486..3948611 360..485 630 100 Plus
3L 28110227 3L 3947934..3947996 17..79 315 100 Plus
3L 28110227 3L 3948359..3948406 313..360 240 100 Plus
3L 28110227 3L 11107165..11107213 114..162 200 93.9 Plus
Blast to na_te.dros performed 2015-02-13 08:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 8630..8685 420..478 116 71.2 Plus

BS06384.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:25 Download gff for BS06384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:03 Download gff for BS06384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:47 Download gff for BS06384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 41..512 14..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:37:22 Download gff for BS06384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 41..512 14..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:37:22 Download gff for BS06384.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3947934..3947996 17..79 100 -> Plus
3L 3948054..3948287 80..313 100 -> Plus
3L 3948360..3948406 314..360 100 -> Plus
3L 3948487..3948611 361..485 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:47 Download gff for BS06384.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3947934..3947996 17..79 100 -> Plus
arm_3L 3948054..3948287 80..313 100 -> Plus
arm_3L 3948360..3948406 314..360 100 -> Plus
arm_3L 3948487..3948611 361..485 100   Plus

BS06384.3prime Sequence

498 bp (497 high quality bases) assembled on 2005-12-03

> BS06384.3prime
ATGGTCTAGAAAGCTTCTATTTGCCACCCAGGAGTCCACCCAAGATGCCA
CCGCCGCCGCTGCTGCTGCCGCCTCCGGTGATGCCGGGTATGGAAATGAG
ATTGCCCAGCAATGGGTTGCCATTTAAAGTGAGCAGGCAGCGCAGATCCA
GCCGGATGACGTACTGACAGGCCCATTCCCGCAGGCACCGTAAAGCTTCG
GGAGAAGGACGCGGGCAAGTGCCGCCGATTGCTCCGCCGCCACCTTCTCC
ACTTCCGCTTCCTCCGCCGGCGCCACCACCTCCACCACCACCACCGCCAC
TACCACCTCCTCCGCCACCTCCTTCTTTGGGATAAACAGGAACAGGAACT
GGCACAGGAACTGGCACCGGAACAGGCACTGGCACCTTCTTTATCGGAGT
GGGCTGCTGCTCCCAGGGATTATTGTGACCCAAGGCCAGGGATATTAGTC
CTAGCACAGCTAGGGATATAACTAATTTCCTCATGTCGACTGATAACT

BS06384.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-PA 468 CG10853-RA 1..468 484..17 2340 100 Minus
CG32073-PA 330 CG32073-RA 145..193 339..387 170 93.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-RA 588 CG10853-RA 44..512 484..16 2345 100 Minus
CG32073-RB 575 CG32073-RB 370..418 339..387 200 93.9 Plus
CG32073-RA 369 CG32073-RA 164..212 339..387 200 93.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3948054..3948287 421..188 1170 100 Minus
3L 28110227 3L 3948486..3948611 141..16 630 100 Minus
3L 28110227 3L 3947934..3947996 484..422 315 100 Minus
3L 28110227 3L 3948359..3948406 188..141 240 100 Minus
3L 28110227 3L 11107165..11107213 387..339 200 93.9 Minus
Blast to na_te.dros performed 2015-02-10 21:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 8630..8685 81..23 116 71.2 Minus

BS06384.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:24 Download gff for BS06384.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:01 Download gff for BS06384.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:48 Download gff for BS06384.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 41..512 16..487 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:33 Download gff for BS06384.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 41..512 16..487 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:33 Download gff for BS06384.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3947931..3947996 422..487 98 -> Minus
3L 3948054..3948287 188..421 100 -> Minus
3L 3948360..3948406 141..187 100 -> Minus
3L 3948487..3948611 16..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:48 Download gff for BS06384.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3947931..3947996 422..487 98 -> Minus
arm_3L 3948054..3948287 188..421 100 -> Minus
arm_3L 3948360..3948406 141..187 100 -> Minus
arm_3L 3948487..3948611 16..140 100   Minus

BS06384.complete Sequence

500 bp (500 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635469

> BS06384.complete
GAAGTTATCAGTCGACATGAGGAAATTAGTTATATCCCTAGCTGTGCTAG
GACTAATATCCCTGGCCTTGGGTCACAATAATCCCTGGGAGCAGCAGCCC
ACTCCGATAAAGAAGGTGCCAGTGCCTGTTCCGGTGCCAGTTCCTGTGCC
AGTTCCTGTTCCTGTTTATCCCAAAGAAGGAGGTGGCGGAGGAGGTGGTA
GTGGCGGTGGTGGTGGTGGAGGTGGTGGCGCCGGCGGAGGAAGCGGAAGT
GGAGAAGGTGGCGGCGGAGCAATCGGCGGCACTTGCCCGCGTCCTTCTCC
CGAAGCTTTACGGTGCCTGCGGGAATGGGCCTGTCAGTACGTCATCCGGC
TGGATCTGCGCTGCCTGCTCACTTTAAATGGCAACCCATTGCTGGGCAAT
CTCATTTCCATACCCGGCATCACCGGAGGCGGCAGCAGCAGCGGCGGCGG
TGGCATCTTGGGTGGACTCCTGGGTGGCAAATAGAAGCTTTCTAGACCAT

BS06384.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-RA 468 CG10853-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-RA 588 CG10853-RA 44..512 17..485 2345 100 Plus
CG32073-RB 575 CG32073-RB 370..418 162..114 200 93.9 Minus
CG32073-RA 369 CG32073-RA 164..212 162..114 200 93.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3948054..3948287 80..313 1170 100 Plus
3L 28110227 3L 3948486..3948611 360..485 630 100 Plus
3L 28110227 3L 3947934..3947996 17..79 315 100 Plus
3L 28110227 3L 3948359..3948406 313..360 240 100 Plus
3L 28110227 3L 11107165..11107213 114..162 200 93.9 Plus
Blast to na_te.dros performed 2014-11-27 20:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 8630..8685 420..478 116 71.2 Plus

BS06384.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:53 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:21 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 20..491 14..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:29 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 44..505 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:53 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 20..491 14..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:04 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
CG10853-RA 44..505 17..478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:04 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3948487..3948604 361..478 100   Plus
3L 3947934..3947996 17..79 100 -> Plus
3L 3948054..3948287 80..313 100 -> Plus
3L 3948360..3948406 314..360 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:29 Download gff for BS06384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3947934..3947996 17..79 100 -> Plus
arm_3L 3948054..3948287 80..313 100 -> Plus
arm_3L 3948360..3948406 314..360 100 -> Plus
arm_3L 3948487..3948604 361..478 100   Plus

BS06384.pep Sequence

Translation from 16 to 483

> BS06384.pep
MRKLVISLAVLGLISLALGHNNPWEQQPTPIKKVPVPVPVPVPVPVPVPV
YPKEGGGGGGGSGGGGGGGGGAGGGSGSGEGGGGAIGGTCPRPSPEALRC
LREWACQYVIRLDLRCLLTLNGNPLLGNLISIPGITGGGSSSGGGGILGG
LLGGK*

BS06384.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10853-PA 155 CG10853-PA 1..155 1..155 837 100 Plus
TwdlT-PA 286 CG5812-PA 84..117 55..88 151 79.4 Plus
Ubx-PB 346 CG10388-PB 107..202 55..154 150 41.2 Plus
CG1840-PB 117 CG1840-PB 64..93 55..84 144 83.3 Plus
CG1840-PA 118 CG1840-PA 65..94 55..84 144 83.3 Plus