Clone Sequence Records
BS06387.3prime Sequence
645 bp (644 high quality bases) assembled on 2005-12-03
> BS06387.3prime
ATGGTCTAGAAAGCTTTTAAGCTTTCTGCTTCTGCTCCTGGCCGTAGTAC
TCGCTGTAATCATACTCCCTGAAGGGCACATCGTATGTTAGGTACCCGGA
GTCGCGGGCTTGCTGAACGGCGACCATTAGACGCAGGTGGCTCTTTTGAC
ACAGGCCTGTCTTTGAGTAGCTAAGGACGTCTCCGCTGTGGGGCGATATG
AACTGCTCCAGGAGCTCCGTGTTGCGGTAGTCCAGCACCAGGTATTCATC
ACGGCAAATGGGACAGGGATTTCCGGTGCTGATACGGTTCTGGCGGATGC
ACGTCTTTCGTGTTTTGCGCGGCGCATACATGCCCTTGTGGTTGCGCCGA
TACTGCGTCCACACAAAGTCCTCGCCGTAGGTTTGCTTGTAAGCGGCGCT
CTTTAAGTATCGAATCGAGGTCTCCACTGGGATTGGTTTGCTGCGATCCT
TCGGGTCTGGTGCGGAACCACTAGCGTTATCCTCGCCTTCGCCTTCGGTG
GCAGCCGCATTATTTTCTTCAGTCGAAGTCTCCGCCTTGCATCTCAAGGC
GCTGGCCGTGTGAAGAGCTCCCCGGCTATTCCGGGTAATGTTGACCAGTC
CAATGTAAATTCCACGTGCAATCGGCAACATGTCGACTGATAACT
BS06387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10757-PA | 615 | mRpS18B-RA | 1..615 | 631..17 | 3075 | 100 | Minus |
CG10757-PB | 615 | mRpS18B-RB | 1..615 | 631..17 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 761 | CG10757-RB | 105..719 | 631..17 | 3075 | 100 | Minus |
mRpS18B-RA | 863 | CG10757-RA | 105..719 | 631..17 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20096473..20096804 | 17..348 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 20096865..20097149 | 347..631 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:54:26 has no hits.
BS06387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:29 Download gff for
BS06387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PA | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:10 Download gff for
BS06387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PB | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:45 Download gff for
BS06387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..725 | 12..640 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:17 Download gff for
BS06387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..725 | 12..640 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:17 Download gff for
BS06387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20096467..20096803 | 12..347 | 99 | <- | Plus |
2L | 20096866..20097158 | 348..640 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:45 Download gff for
BS06387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20096467..20096803 | 12..347 | 99 | <- | Plus |
arm_2L | 20096866..20097158 | 348..640 | 98 | | Plus |
BS06387.5prime Sequence
645 bp (644 high quality bases) assembled on 2005-12-03
> BS06387.5prime
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTTAAAAGCTTTCTAGACC
BS06387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10757-PA | 615 | mRpS18B-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
CG10757-PB | 615 | mRpS18B-RB | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 761 | CG10757-RB | 105..719 | 17..631 | 3075 | 100 | Plus |
mRpS18B-RA | 863 | CG10757-RA | 105..719 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20096473..20096804 | 631..300 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 20096865..20097149 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:34:12 has no hits.
BS06387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:31 Download gff for
BS06387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:11 Download gff for
BS06387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:37 Download gff for
BS06387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..725 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:53 Download gff for
BS06387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..725 | 8..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:53 Download gff for
BS06387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20096467..20096803 | 301..636 | 99 | <- | Minus |
2L | 20096866..20097158 | 8..300 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:37 Download gff for
BS06387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20096467..20096803 | 301..636 | 99 | <- | Minus |
arm_2L | 20096866..20097158 | 8..300 | 98 | | Minus |
BS06387.complete Sequence
647 bp (647 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635471
> BS06387.complete
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTTAAAAGCTTTCTAGACCAT
BS06387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 615 | CG10757-PB | 1..615 | 17..631 | 3075 | 100 | Plus |
mRpS18B-RA | 615 | CG10757-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 761 | CG10757-RB | 105..719 | 17..631 | 3075 | 100 | Plus |
mRpS18B-RA | 863 | CG10757-RA | 105..719 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20096473..20096804 | 631..300 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 20096865..20097149 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:31:37 has no hits.
BS06387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:57 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:24 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RB | 89..718 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:56 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 110..717 | 22..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:57 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RB | 89..718 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:32 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 110..717 | 22..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:32 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20096475..20096803 | 301..629 | 100 | <- | Minus |
2L | 20096866..20097144 | 22..300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:56 Download gff for
BS06387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20096475..20096803 | 301..629 | 100 | <- | Minus |
arm_2L | 20096866..20097144 | 22..300 | 100 | | Minus |
BS06387.pep Sequence
Translation from 16 to 630
> BS06387.pep
MLPIARGIYIGLVNITRNSRGALHTASALRCKAETSTEENNAAATEGEGE
DNASGSAPDPKDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKG
MYAPRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSG
DVLSYSKTGLCQKSHLRLMVAVQQARDSGYLTYDVPFREYDYSEYYGQEQ
KQKA*
BS06387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-PB | 204 | CG10757-PB | 1..204 | 1..204 | 1079 | 100 | Plus |
mRpS18B-PA | 204 | CG10757-PA | 1..204 | 1..204 | 1079 | 100 | Plus |