Clone BS06387 Report

Search the DGRC for BS06387

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS18B-RA
Protein status:BS06387.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06387.3prime Sequence

645 bp (644 high quality bases) assembled on 2005-12-03

> BS06387.3prime
ATGGTCTAGAAAGCTTTTAAGCTTTCTGCTTCTGCTCCTGGCCGTAGTAC
TCGCTGTAATCATACTCCCTGAAGGGCACATCGTATGTTAGGTACCCGGA
GTCGCGGGCTTGCTGAACGGCGACCATTAGACGCAGGTGGCTCTTTTGAC
ACAGGCCTGTCTTTGAGTAGCTAAGGACGTCTCCGCTGTGGGGCGATATG
AACTGCTCCAGGAGCTCCGTGTTGCGGTAGTCCAGCACCAGGTATTCATC
ACGGCAAATGGGACAGGGATTTCCGGTGCTGATACGGTTCTGGCGGATGC
ACGTCTTTCGTGTTTTGCGCGGCGCATACATGCCCTTGTGGTTGCGCCGA
TACTGCGTCCACACAAAGTCCTCGCCGTAGGTTTGCTTGTAAGCGGCGCT
CTTTAAGTATCGAATCGAGGTCTCCACTGGGATTGGTTTGCTGCGATCCT
TCGGGTCTGGTGCGGAACCACTAGCGTTATCCTCGCCTTCGCCTTCGGTG
GCAGCCGCATTATTTTCTTCAGTCGAAGTCTCCGCCTTGCATCTCAAGGC
GCTGGCCGTGTGAAGAGCTCCCCGGCTATTCCGGGTAATGTTGACCAGTC
CAATGTAAATTCCACGTGCAATCGGCAACATGTCGACTGATAACT

BS06387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10757-PA 615 mRpS18B-RA 1..615 631..17 3075 100 Minus
CG10757-PB 615 mRpS18B-RB 1..615 631..17 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 761 CG10757-RB 105..719 631..17 3075 100 Minus
mRpS18B-RA 863 CG10757-RA 105..719 631..17 3075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20096473..20096804 17..348 1660 100 Plus
2L 23513712 2L 20096865..20097149 347..631 1425 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:54:26 has no hits.

BS06387.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:29 Download gff for BS06387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PA 1..615 17..631 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:10 Download gff for BS06387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PB 1..615 17..631 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:45 Download gff for BS06387.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..725 12..640 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:17 Download gff for BS06387.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..725 12..640 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:17 Download gff for BS06387.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20096467..20096803 12..347 99 <- Plus
2L 20096866..20097158 348..640 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:45 Download gff for BS06387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20096467..20096803 12..347 99 <- Plus
arm_2L 20096866..20097158 348..640 98   Plus

BS06387.5prime Sequence

645 bp (644 high quality bases) assembled on 2005-12-03

> BS06387.5prime
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTTAAAAGCTTTCTAGACC

BS06387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10757-PA 615 mRpS18B-RA 1..615 17..631 3075 100 Plus
CG10757-PB 615 mRpS18B-RB 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 761 CG10757-RB 105..719 17..631 3075 100 Plus
mRpS18B-RA 863 CG10757-RA 105..719 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20096473..20096804 631..300 1660 100 Minus
2L 23513712 2L 20096865..20097149 301..17 1425 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:34:12 has no hits.

BS06387.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:31 Download gff for BS06387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:11 Download gff for BS06387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:37 Download gff for BS06387.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..725 8..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:53 Download gff for BS06387.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..725 8..636 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:53 Download gff for BS06387.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20096467..20096803 301..636 99 <- Minus
2L 20096866..20097158 8..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:37 Download gff for BS06387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20096467..20096803 301..636 99 <- Minus
arm_2L 20096866..20097158 8..300 98   Minus

BS06387.complete Sequence

647 bp (647 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635471

> BS06387.complete
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTTAAAAGCTTTCTAGACCAT

BS06387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 615 CG10757-PB 1..615 17..631 3075 100 Plus
mRpS18B-RA 615 CG10757-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 761 CG10757-RB 105..719 17..631 3075 100 Plus
mRpS18B-RA 863 CG10757-RA 105..719 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20096473..20096804 631..300 1660 100 Minus
2L 23513712 2L 20096865..20097149 301..17 1425 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:31:37 has no hits.

BS06387.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:57 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:24 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RB 89..718 8..636 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:56 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 110..717 22..629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:57 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RB 89..718 8..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:32 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 110..717 22..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:32 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20096475..20096803 301..629 100 <- Minus
2L 20096866..20097144 22..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:56 Download gff for BS06387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20096475..20096803 301..629 100 <- Minus
arm_2L 20096866..20097144 22..300 100   Minus

BS06387.pep Sequence

Translation from 16 to 630

> BS06387.pep
MLPIARGIYIGLVNITRNSRGALHTASALRCKAETSTEENNAAATEGEGE
DNASGSAPDPKDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKG
MYAPRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSG
DVLSYSKTGLCQKSHLRLMVAVQQARDSGYLTYDVPFREYDYSEYYGQEQ
KQKA*

BS06387.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-PB 204 CG10757-PB 1..204 1..204 1079 100 Plus
mRpS18B-PA 204 CG10757-PA 1..204 1..204 1079 100 Plus