Clone BS06389 Report

Search the DGRC for BS06389

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG3505-RA
Protein status:BS06389.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06389.3prime Sequence

940 bp (932 high quality bases) assembled on 2005-12-03

> BS06389.3prime
ATGGTCTAGAAAGCTTCTATGCTTTGAGACTGTCGTGAATCCAATCGATG
TAGGACGCCACCCTGGTGTAGACATCCGGCCAGTCGGGATTGGGGCAGGG
AACGGGTCCGAACGACACCAGTCCACCGAGCAGATAGCCATCGTTCTTGA
ACAGCATCAGTGGTCCACCAGCGTTGCCGTAGCACTCCTGGGAATTGGTC
AGGCCACAGAGCTTCGAGGCTTGGATGCGCAACTGCTGGCTGGCGTACTT
CCTTTGACACTCCTCAATCGAACTAATGGTCACATAACCTTTTCGCATCC
TTTGCGAGGAACTAGCCTGCCATCCGGCCACCTCGGTGACCAGGTCCTCC
AGCTCGTCCGCTCGCAGCTGCTTGTTGGGCAGGCAAATGGGTTGCACAAA
GTCGTTGAGCTTGGCAGGACTTGCCAGTCGGACGAGGGCAATGTCGTTGA
TCTGCGTCCTGTCGGTGCGATTGTAGAGCGGATGTGGAAGCAACTCCTCG
ATGGCTATGTCCTGGTAGGGAGGCGCGCAATCCGCCACTTTACTATCCTC
ATGGTACTGACAGTCGGGATTCGTGCTAGTGTCCCATTCACCCAACCGGA
CAGCAGTAATCTGCAGATTGCTAGTCGCCGCCTGGGCCACACAATGGGCA
GCAGTTAGCACATACCGATCACTGATAAGCACACCGCCACACGCATGGAT
CTTCTCCTGGTTGCCGCGCGTATACTCAATGAGGGCCAGCCAGGGAAACT
CCCGGATTCGCGTATCTGTGTCATTCGAACGCTGCCAACGAACCTTTCCC
GCATCCGAGGGCAAAAGTGGGTGGGTCAGGGCACCCAAGCCGGCGGTACT
AGGACAGCATACCTGGACGTCGTTGCCCCGCACTCCGCACTGATTATCAC
GGAGCAGGTTGCGATCGCTCTGGCTGAGATTGCCGATAGC

BS06389.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-PA 1083 CG3505-RA 301..1083 799..17 3915 100 Minus
CG3505-PA 1083 CG3505-RA 165..297 935..803 665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1185 CG3505-RA 210..1135 940..16 4560 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14658479..14659178 715..16 3500 100 Minus
3R 32079331 3R 14658258..14658408 864..714 710 98 Minus
3R 32079331 3R 14657750..14657824 935..861 375 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:39:12 has no hits.

BS06389.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:34 Download gff for BS06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 159..1083 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:15 Download gff for BS06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 159..1083 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:32 Download gff for BS06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 200..1127 11..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:25 Download gff for BS06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 210..1137 11..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:25 Download gff for BS06389.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14657744..14657822 863..940 98 -> Minus
3R 14658260..14658407 715..862 98 -> Minus
3R 14658480..14659180 11..714 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:32 Download gff for BS06389.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10483466..10483544 863..940 98 -> Minus
arm_3R 10483982..10484129 715..862 98 -> Minus
arm_3R 10484202..10484902 11..714 99   Minus

BS06389.5prime Sequence

897 bp (758 high quality bases) assembled on 2005-12-03

> BS06389.5prime
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCANG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGC

BS06389.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-PA 1083 CG3505-RA 1..881 17..897 4386 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1185 CG3505-RA 51..932 16..897 4399 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14658479..14658975 401..897 2474 99.8 Plus
3R 32079331 3R 14657643..14657824 74..255 910 100 Plus
3R 32079331 3R 14658258..14658408 252..402 755 100 Plus
3R 32079331 3R 14657497..14657555 16..74 295 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:47:15 has no hits.

BS06389.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:35 Download gff for BS06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:17 Download gff for BS06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:29 Download gff for BS06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 38..922 13..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:30 Download gff for BS06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 48..932 13..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:30 Download gff for BS06389.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14658260..14658407 254..401 100 -> Plus
3R 14657494..14657555 13..74 98 -> Plus
3R 14657644..14657822 75..253 100 -> Plus
3R 14658480..14658975 402..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:29 Download gff for BS06389.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10483216..10483277 13..74 98 -> Plus
arm_3R 10483366..10483544 75..253 100 -> Plus
arm_3R 10483982..10484129 254..401 100 -> Plus
arm_3R 10484202..10484697 402..897 99   Plus

BS06389.complete Sequence

1115 bp (1115 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635472

> BS06389.complete
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGCCTC
GAAGCTCTGTGGCCTGACCAATTCCCAGGAGTGCTACGGCAACGCTGGTG
GACCACTGATGCTGTTCAAGAACGATGGCTATCTGCTCGGTGGACTGGTG
TCGTTCGGACCCGTTCCCTGCCCCAATCCCGACTGGCCGGATGTCTACAC
CAGGGTGGCGTCCTACATCGATTGGATTCACGACAGTCTCAAAGCATAGA
AGCTTTCTAGACCAT

BS06389.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1083 CG3505-PA 1..1083 17..1099 5415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1185 CG3505-RA 51..1135 16..1100 5425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14658479..14659178 401..1100 3500 100 Plus
3R 32079331 3R 14657643..14657824 74..255 910 100 Plus
3R 32079331 3R 14658258..14658408 252..402 755 100 Plus
3R 32079331 3R 14657497..14657555 16..74 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:13:14 has no hits.

BS06389.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:33 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 1..1083 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:57 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 24..1113 13..1105 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:06 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 42..1124 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:33 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 24..1113 13..1105 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:00 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 52..1134 17..1099 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:00 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14657498..14657555 17..74 100 -> Plus
3R 14657644..14657822 75..253 100 -> Plus
3R 14658260..14658407 254..401 100 -> Plus
3R 14658480..14659177 402..1099 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:06 Download gff for BS06389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10483220..10483277 17..74 100 -> Plus
arm_3R 10483366..10483544 75..253 100 -> Plus
arm_3R 10483982..10484129 254..401 100 -> Plus
arm_3R 10484202..10484899 402..1099 100   Plus

BS06389.pep Sequence

Translation from 16 to 1098

> BS06389.pep
MGSFPALLVVVGSLALGANAQLPPINCVAKIPSGRVTGHCISIRECDYFM
RILLSGNLSQSDRNLLRDNQCGVRGNDVQVCCPSTAGLGALTHPLLPSDC
GKVRWQRSNDTDTRIREFPWLALIEYTRGNQEKIHACGGVLISDRYVLTA
AHCVAQAATSNLQITAVRLGEWDTSTNPDCQYHEDSKVADCAPPYQDIAI
EELLPHPLYNRTDRTQINDIALVRLASPAKLNDFVQPICLPNKQLRADEL
EDLVTEVAGWQASSSQRMRKGYVTISSIEECQRKYASQQLRIQASKLCGL
TNSQECYGNAGGPLMLFKNDGYLLGGLVSFGPVPCPNPDWPDVYTRVASY
IDWIHDSLKA*

BS06389.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-PA 360 CG3505-PA 1..360 1..360 1924 100 Plus
ea-PA 392 CG4920-PA 7..392 7..360 656 38 Plus
MP1-PA 390 CG1102-PA 36..390 37..360 632 38.3 Plus
MP1-PC 399 CG1102-PC 36..399 37..360 613 37.6 Plus
ea-PB 261 CG4920-PB 3..261 113..360 583 44.6 Plus