Clone Sequence Records
BS06389.3prime Sequence
940 bp (932 high quality bases) assembled on 2005-12-03
> BS06389.3prime
ATGGTCTAGAAAGCTTCTATGCTTTGAGACTGTCGTGAATCCAATCGATG
TAGGACGCCACCCTGGTGTAGACATCCGGCCAGTCGGGATTGGGGCAGGG
AACGGGTCCGAACGACACCAGTCCACCGAGCAGATAGCCATCGTTCTTGA
ACAGCATCAGTGGTCCACCAGCGTTGCCGTAGCACTCCTGGGAATTGGTC
AGGCCACAGAGCTTCGAGGCTTGGATGCGCAACTGCTGGCTGGCGTACTT
CCTTTGACACTCCTCAATCGAACTAATGGTCACATAACCTTTTCGCATCC
TTTGCGAGGAACTAGCCTGCCATCCGGCCACCTCGGTGACCAGGTCCTCC
AGCTCGTCCGCTCGCAGCTGCTTGTTGGGCAGGCAAATGGGTTGCACAAA
GTCGTTGAGCTTGGCAGGACTTGCCAGTCGGACGAGGGCAATGTCGTTGA
TCTGCGTCCTGTCGGTGCGATTGTAGAGCGGATGTGGAAGCAACTCCTCG
ATGGCTATGTCCTGGTAGGGAGGCGCGCAATCCGCCACTTTACTATCCTC
ATGGTACTGACAGTCGGGATTCGTGCTAGTGTCCCATTCACCCAACCGGA
CAGCAGTAATCTGCAGATTGCTAGTCGCCGCCTGGGCCACACAATGGGCA
GCAGTTAGCACATACCGATCACTGATAAGCACACCGCCACACGCATGGAT
CTTCTCCTGGTTGCCGCGCGTATACTCAATGAGGGCCAGCCAGGGAAACT
CCCGGATTCGCGTATCTGTGTCATTCGAACGCTGCCAACGAACCTTTCCC
GCATCCGAGGGCAAAAGTGGGTGGGTCAGGGCACCCAAGCCGGCGGTACT
AGGACAGCATACCTGGACGTCGTTGCCCCGCACTCCGCACTGATTATCAC
GGAGCAGGTTGCGATCGCTCTGGCTGAGATTGCCGATAGC
BS06389.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-PA | 1083 | CG3505-RA | 301..1083 | 799..17 | 3915 | 100 | Minus |
CG3505-PA | 1083 | CG3505-RA | 165..297 | 935..803 | 665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1185 | CG3505-RA | 210..1135 | 940..16 | 4560 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14658479..14659178 | 715..16 | 3500 | 100 | Minus |
3R | 32079331 | 3R | 14658258..14658408 | 864..714 | 710 | 98 | Minus |
3R | 32079331 | 3R | 14657750..14657824 | 935..861 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:39:12 has no hits.
BS06389.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:34 Download gff for
BS06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 159..1083 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:15 Download gff for
BS06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 159..1083 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:32 Download gff for
BS06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 200..1127 | 11..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:25 Download gff for
BS06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 210..1137 | 11..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:25 Download gff for
BS06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14657744..14657822 | 863..940 | 98 | -> | Minus |
3R | 14658260..14658407 | 715..862 | 98 | -> | Minus |
3R | 14658480..14659180 | 11..714 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:32 Download gff for
BS06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10483466..10483544 | 863..940 | 98 | -> | Minus |
arm_3R | 10483982..10484129 | 715..862 | 98 | -> | Minus |
arm_3R | 10484202..10484902 | 11..714 | 99 | | Minus |
BS06389.5prime Sequence
897 bp (758 high quality bases) assembled on 2005-12-03
> BS06389.5prime
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCANG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGC
BS06389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-PA | 1083 | CG3505-RA | 1..881 | 17..897 | 4386 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1185 | CG3505-RA | 51..932 | 16..897 | 4399 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14658479..14658975 | 401..897 | 2474 | 99.8 | Plus |
3R | 32079331 | 3R | 14657643..14657824 | 74..255 | 910 | 100 | Plus |
3R | 32079331 | 3R | 14658258..14658408 | 252..402 | 755 | 100 | Plus |
3R | 32079331 | 3R | 14657497..14657555 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:47:15 has no hits.
BS06389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:35 Download gff for
BS06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:17 Download gff for
BS06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:29 Download gff for
BS06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 38..922 | 13..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:30 Download gff for
BS06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 48..932 | 13..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:30 Download gff for
BS06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14658260..14658407 | 254..401 | 100 | -> | Plus |
3R | 14657494..14657555 | 13..74 | 98 | -> | Plus |
3R | 14657644..14657822 | 75..253 | 100 | -> | Plus |
3R | 14658480..14658975 | 402..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:29 Download gff for
BS06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10483216..10483277 | 13..74 | 98 | -> | Plus |
arm_3R | 10483366..10483544 | 75..253 | 100 | -> | Plus |
arm_3R | 10483982..10484129 | 254..401 | 100 | -> | Plus |
arm_3R | 10484202..10484697 | 402..897 | 99 | | Plus |
BS06389.complete Sequence
1115 bp (1115 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635472
> BS06389.complete
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGCCTC
GAAGCTCTGTGGCCTGACCAATTCCCAGGAGTGCTACGGCAACGCTGGTG
GACCACTGATGCTGTTCAAGAACGATGGCTATCTGCTCGGTGGACTGGTG
TCGTTCGGACCCGTTCCCTGCCCCAATCCCGACTGGCCGGATGTCTACAC
CAGGGTGGCGTCCTACATCGATTGGATTCACGACAGTCTCAAAGCATAGA
AGCTTTCTAGACCAT
BS06389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1083 | CG3505-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1185 | CG3505-RA | 51..1135 | 16..1100 | 5425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14658479..14659178 | 401..1100 | 3500 | 100 | Plus |
3R | 32079331 | 3R | 14657643..14657824 | 74..255 | 910 | 100 | Plus |
3R | 32079331 | 3R | 14658258..14658408 | 252..402 | 755 | 100 | Plus |
3R | 32079331 | 3R | 14657497..14657555 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:14 has no hits.
BS06389.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:33 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 1..1083 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:57 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 24..1113 | 13..1105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:06 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 42..1124 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:33 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 24..1113 | 13..1105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:00 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 52..1134 | 17..1099 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:00 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14657498..14657555 | 17..74 | 100 | -> | Plus |
3R | 14657644..14657822 | 75..253 | 100 | -> | Plus |
3R | 14658260..14658407 | 254..401 | 100 | -> | Plus |
3R | 14658480..14659177 | 402..1099 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:06 Download gff for
BS06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10483220..10483277 | 17..74 | 100 | -> | Plus |
arm_3R | 10483366..10483544 | 75..253 | 100 | -> | Plus |
arm_3R | 10483982..10484129 | 254..401 | 100 | -> | Plus |
arm_3R | 10484202..10484899 | 402..1099 | 100 | | Plus |
BS06389.pep Sequence
Translation from 16 to 1098
> BS06389.pep
MGSFPALLVVVGSLALGANAQLPPINCVAKIPSGRVTGHCISIRECDYFM
RILLSGNLSQSDRNLLRDNQCGVRGNDVQVCCPSTAGLGALTHPLLPSDC
GKVRWQRSNDTDTRIREFPWLALIEYTRGNQEKIHACGGVLISDRYVLTA
AHCVAQAATSNLQITAVRLGEWDTSTNPDCQYHEDSKVADCAPPYQDIAI
EELLPHPLYNRTDRTQINDIALVRLASPAKLNDFVQPICLPNKQLRADEL
EDLVTEVAGWQASSSQRMRKGYVTISSIEECQRKYASQQLRIQASKLCGL
TNSQECYGNAGGPLMLFKNDGYLLGGLVSFGPVPCPNPDWPDVYTRVASY
IDWIHDSLKA*
BS06389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-PA | 360 | CG3505-PA | 1..360 | 1..360 | 1924 | 100 | Plus |
ea-PA | 392 | CG4920-PA | 7..392 | 7..360 | 656 | 38 | Plus |
MP1-PA | 390 | CG1102-PA | 36..390 | 37..360 | 632 | 38.3 | Plus |
MP1-PC | 399 | CG1102-PC | 36..399 | 37..360 | 613 | 37.6 | Plus |
ea-PB | 261 | CG4920-PB | 3..261 | 113..360 | 583 | 44.6 | Plus |