Clone Sequence Records
BS06392.3prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-03
> BS06392.3prime
ATGGTCTAGAAAGCTTCTAGTACAGTTTCTGCAGATCGTTGAGCGGCTGA
TTCAGGAAGTCGTTGGTCCAGTTTTTGTCCGGATTATCTAGATGGTTGTC
AAAGTCAACCAAATCCCGCATGGCTCCGCGCTTCAGCAGCAGCGACACGC
CTTCCAATGTATCGGACGCCTGTGAGAGCGTAAACTTGGCCTTTGACCAC
CTTGCTCCAGAGTCTCCGGGACAGTTGAATACCTGGATGGCGGCTCGGTC
GTGCTGCAGCGTCATCAGTTTGTTGTCCACCACCACAAAGCAGGCGTTCT
TGAAGTTCTCCTGGATCTTGTCAGCTATCTTGGCGGCTGGGGTCTTGTCG
ACCTGGTTGTCGTAGAAGTTCTCCGGTGCTGCGTAGTAGCCTGCGATTAC
TAATCCTTCCCGTTCGGCGTGGGCATCGATCAGCATGAGGGCCACCTCCG
CCATGGGGGTGACATACAGGCACTGGTGGAAAAGCGGAATCGCATCCACG
ATTTCCACTTGGGAGCCCTTCGATGTCTTCTCGGCCAGCAAGAGTCCGTT
GACCGCCTGGTGTGGATACTTGGCCGCGTGGAATATCAACTTGGCGTACG
CCCGCTCCGAGACCTTGTAGTCGCACATGTCGACTGATAACT
BS06392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-PA | 612 | CG3501-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-RA | 888 | CG3501-RA | 92..703 | 628..17 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22881507..22881921 | 17..431 | 2075 | 100 | Plus |
2R | 25286936 | 2R | 22882402..22882599 | 431..628 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:01:06 has no hits.
BS06392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:38 Download gff for
BS06392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:20 Download gff for
BS06392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:08:49 Download gff for
BS06392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 87..703 | 17..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:56 Download gff for
BS06392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 87..703 | 17..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:56 Download gff for
BS06392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22881507..22881920 | 17..430 | 100 | <- | Plus |
2R | 22882402..22882604 | 431..635 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:08:49 Download gff for
BS06392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18769030..18769443 | 17..430 | 100 | <- | Plus |
arm_2R | 18769925..18770127 | 431..635 | 98 | | Plus |
BS06392.5prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-03
> BS06392.5prime
GAAGTTATCAGTCGACATGTGCGACTACAAGGTCTCGGAGCGGGCGTACG
CCAAGTTGATATTCCACGCGGCCAAGTATCCACACCAGGCGGTCAACGGA
CTCTTGCTGGCCGAGAAGACATCGAAGGGCTCCCAAGTGGAAATCGTGGA
TGCGATTCCGCTTTTCCACCAGTGCCTGTATGTCACCCCCATGGCGGAGG
TGGCCCTCATGCTGATCGATGCCCACGCCGAACGGGAAGGATTAGTAATC
GCAGGCTACTACGCAGCACCGGAGAACTTCTACGACAACCAGGTCGACAA
GACCCCAGCCGCCAAGATAGCTGACAAGATCCAGGAGAACTTCAAGAACG
CCTGCTTTGTGGTGGTGGACAACAAACTGATGACGCTGCAGCACGACCGA
GCCGCCATCCAGGTATTCAACTGTCCCGGAGACTCTGGAGCAAGGTGGTC
AAAGGCCAAGTTTACGCTCTCACAGGCGTCCGATACATTGGAAGGCGTGT
CGCTGCTGCTGAAGCGCGGAGCCATGCGGGATTTGGTTGACTTTGACAAC
CATCTAGATAATCCGGACAAAAACTGGACCAACGACTTCCTGAATCAGCC
GCTCAACGATCTGCAGAAACTGTACTAGAAGCTTTCTAGACC
BS06392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-PA | 612 | CG3501-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-RA | 888 | CG3501-RA | 92..703 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22881507..22881921 | 628..214 | 2075 | 100 | Minus |
2R | 25286936 | 2R | 22882402..22882599 | 214..17 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:37:52 has no hits.
BS06392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:39 Download gff for
BS06392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:22 Download gff for
BS06392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:56 Download gff for
BS06392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 87..703 | 10..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:47 Download gff for
BS06392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 87..703 | 10..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:47 Download gff for
BS06392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22881507..22881920 | 215..628 | 100 | <- | Minus |
2R | 22882402..22882604 | 10..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:56 Download gff for
BS06392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18769030..18769443 | 215..628 | 100 | <- | Minus |
arm_2R | 18769925..18770127 | 10..214 | 98 | | Minus |
BS06392.complete Sequence
644 bp (644 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635473
> BS06392.complete
GAAGTTATCAGTCGACATGTGCGACTACAAGGTCTCGGAGCGGGCGTACG
CCAAGTTGATATTCCACGCGGCCAAGTATCCACACCAGGCGGTCAACGGA
CTCTTGCTGGCCGAGAAGACATCGAAGGGCTCCCAAGTGGAAATCGTGGA
TGCGATTCCGCTTTTCCACCAGTGCCTGTATGTCACCCCCATGGCGGAGG
TGGCCCTCATGCTGATCGATGCCCACGCCGAACGGGAAGGATTAGTAATC
GCAGGCTACTACGCAGCACCGGAGAACTTCTACGACAACCAGGTCGACAA
GACCCCAGCCGCCAAGATAGCTGACAAGATCCAGGAGAACTTCAAGAACG
CCTGCTTTGTGGTGGTGGACAACAAACTGATGACGCTGCAGCACGACCGA
GCCGCCATCCAGGTATTCAACTGTCCCGGAGACTCTGGAGCAAGGTGGTC
AAAGGCCAAGTTTACGCTCTCACAGGCGTCCGATACATTGGAAGGCGTGT
CGCTGCTGCTGAAGCGCGGAGCCATGCGGGATTTGGTTGACTTTGACAAC
CATCTAGATAATCCGGACAAAAACTGGACCAACGACTTCCTGAATCAGCC
GCTCAACGATCTGCAGAAACTGTACTAGAAGCTTTCTAGACCAT
BS06392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-RA | 612 | CG3501-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-RA | 888 | CG3501-RA | 92..703 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22881507..22881921 | 628..214 | 2075 | 100 | Minus |
2R | 25286936 | 2R | 22882402..22882599 | 214..17 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:42:12 has no hits.
BS06392.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:34 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:58 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 84..700 | 10..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:03 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 92..703 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:34 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 84..700 | 10..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:39 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3501-RA | 92..703 | 17..628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:39 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22882402..22882599 | 17..214 | 100 | | Minus |
2R | 22881507..22881920 | 215..628 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:03 Download gff for
BS06392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18769030..18769443 | 215..628 | 100 | <- | Minus |
arm_2R | 18769925..18770122 | 17..214 | 100 | | Minus |
BS06392.pep Sequence
Translation from 16 to 627
> BS06392.pep
MCDYKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKGSQVEIVDAIPLF
HQCLYVTPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAK
IADKIQENFKNACFVVVDNKLMTLQHDRAAIQVFNCPGDSGARWSKAKFT
LSQASDTLEGVSLLLKRGAMRDLVDFDNHLDNPDKNWTNDFLNQPLNDLQ
KLY*
BS06392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3501-PA | 203 | CG3501-PA | 1..203 | 1..203 | 1064 | 100 | Plus |