Clone BS06392 Report

Search the DGRC for BS06392

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG3501-RA
Protein status:BS06392.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06392.3prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BS06392.3prime
ATGGTCTAGAAAGCTTCTAGTACAGTTTCTGCAGATCGTTGAGCGGCTGA
TTCAGGAAGTCGTTGGTCCAGTTTTTGTCCGGATTATCTAGATGGTTGTC
AAAGTCAACCAAATCCCGCATGGCTCCGCGCTTCAGCAGCAGCGACACGC
CTTCCAATGTATCGGACGCCTGTGAGAGCGTAAACTTGGCCTTTGACCAC
CTTGCTCCAGAGTCTCCGGGACAGTTGAATACCTGGATGGCGGCTCGGTC
GTGCTGCAGCGTCATCAGTTTGTTGTCCACCACCACAAAGCAGGCGTTCT
TGAAGTTCTCCTGGATCTTGTCAGCTATCTTGGCGGCTGGGGTCTTGTCG
ACCTGGTTGTCGTAGAAGTTCTCCGGTGCTGCGTAGTAGCCTGCGATTAC
TAATCCTTCCCGTTCGGCGTGGGCATCGATCAGCATGAGGGCCACCTCCG
CCATGGGGGTGACATACAGGCACTGGTGGAAAAGCGGAATCGCATCCACG
ATTTCCACTTGGGAGCCCTTCGATGTCTTCTCGGCCAGCAAGAGTCCGTT
GACCGCCTGGTGTGGATACTTGGCCGCGTGGAATATCAACTTGGCGTACG
CCCGCTCCGAGACCTTGTAGTCGCACATGTCGACTGATAACT

BS06392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-PA 612 CG3501-RA 1..612 628..17 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-RA 888 CG3501-RA 92..703 628..17 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22881507..22881921 17..431 2075 100 Plus
2R 25286936 2R 22882402..22882599 431..628 990 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:01:06 has no hits.

BS06392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:38 Download gff for BS06392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:20 Download gff for BS06392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:08:49 Download gff for BS06392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 87..703 17..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:56 Download gff for BS06392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 87..703 17..635 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:56 Download gff for BS06392.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22881507..22881920 17..430 100 <- Plus
2R 22882402..22882604 431..635 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:08:49 Download gff for BS06392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18769030..18769443 17..430 100 <- Plus
arm_2R 18769925..18770127 431..635 98   Plus

BS06392.5prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BS06392.5prime
GAAGTTATCAGTCGACATGTGCGACTACAAGGTCTCGGAGCGGGCGTACG
CCAAGTTGATATTCCACGCGGCCAAGTATCCACACCAGGCGGTCAACGGA
CTCTTGCTGGCCGAGAAGACATCGAAGGGCTCCCAAGTGGAAATCGTGGA
TGCGATTCCGCTTTTCCACCAGTGCCTGTATGTCACCCCCATGGCGGAGG
TGGCCCTCATGCTGATCGATGCCCACGCCGAACGGGAAGGATTAGTAATC
GCAGGCTACTACGCAGCACCGGAGAACTTCTACGACAACCAGGTCGACAA
GACCCCAGCCGCCAAGATAGCTGACAAGATCCAGGAGAACTTCAAGAACG
CCTGCTTTGTGGTGGTGGACAACAAACTGATGACGCTGCAGCACGACCGA
GCCGCCATCCAGGTATTCAACTGTCCCGGAGACTCTGGAGCAAGGTGGTC
AAAGGCCAAGTTTACGCTCTCACAGGCGTCCGATACATTGGAAGGCGTGT
CGCTGCTGCTGAAGCGCGGAGCCATGCGGGATTTGGTTGACTTTGACAAC
CATCTAGATAATCCGGACAAAAACTGGACCAACGACTTCCTGAATCAGCC
GCTCAACGATCTGCAGAAACTGTACTAGAAGCTTTCTAGACC

BS06392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-PA 612 CG3501-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-RA 888 CG3501-RA 92..703 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22881507..22881921 628..214 2075 100 Minus
2R 25286936 2R 22882402..22882599 214..17 990 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:37:52 has no hits.

BS06392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:39 Download gff for BS06392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:22 Download gff for BS06392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:56 Download gff for BS06392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 87..703 10..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:47 Download gff for BS06392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 87..703 10..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:47 Download gff for BS06392.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22881507..22881920 215..628 100 <- Minus
2R 22882402..22882604 10..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:56 Download gff for BS06392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18769030..18769443 215..628 100 <- Minus
arm_2R 18769925..18770127 10..214 98   Minus

BS06392.complete Sequence

644 bp (644 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635473

> BS06392.complete
GAAGTTATCAGTCGACATGTGCGACTACAAGGTCTCGGAGCGGGCGTACG
CCAAGTTGATATTCCACGCGGCCAAGTATCCACACCAGGCGGTCAACGGA
CTCTTGCTGGCCGAGAAGACATCGAAGGGCTCCCAAGTGGAAATCGTGGA
TGCGATTCCGCTTTTCCACCAGTGCCTGTATGTCACCCCCATGGCGGAGG
TGGCCCTCATGCTGATCGATGCCCACGCCGAACGGGAAGGATTAGTAATC
GCAGGCTACTACGCAGCACCGGAGAACTTCTACGACAACCAGGTCGACAA
GACCCCAGCCGCCAAGATAGCTGACAAGATCCAGGAGAACTTCAAGAACG
CCTGCTTTGTGGTGGTGGACAACAAACTGATGACGCTGCAGCACGACCGA
GCCGCCATCCAGGTATTCAACTGTCCCGGAGACTCTGGAGCAAGGTGGTC
AAAGGCCAAGTTTACGCTCTCACAGGCGTCCGATACATTGGAAGGCGTGT
CGCTGCTGCTGAAGCGCGGAGCCATGCGGGATTTGGTTGACTTTGACAAC
CATCTAGATAATCCGGACAAAAACTGGACCAACGACTTCCTGAATCAGCC
GCTCAACGATCTGCAGAAACTGTACTAGAAGCTTTCTAGACCAT

BS06392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-RA 612 CG3501-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-RA 888 CG3501-RA 92..703 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22881507..22881921 628..214 2075 100 Minus
2R 25286936 2R 22882402..22882599 214..17 990 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:42:12 has no hits.

BS06392.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:34 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:58 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 84..700 10..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:03 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 92..703 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:34 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 84..700 10..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:39 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 92..703 17..628 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:39 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22882402..22882599 17..214 100   Minus
2R 22881507..22881920 215..628 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:03 Download gff for BS06392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18769030..18769443 215..628 100 <- Minus
arm_2R 18769925..18770122 17..214 100   Minus

BS06392.pep Sequence

Translation from 16 to 627

> BS06392.pep
MCDYKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKGSQVEIVDAIPLF
HQCLYVTPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAK
IADKIQENFKNACFVVVDNKLMTLQHDRAAIQVFNCPGDSGARWSKAKFT
LSQASDTLEGVSLLLKRGAMRDLVDFDNHLDNPDKNWTNDFLNQPLNDLQ
KLY*

BS06392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-PA 203 CG3501-PA 1..203 1..203 1064 100 Plus