Clone Sequence Records
BS06396.3prime Sequence
941 bp (846 high quality bases) assembled on 2005-12-03
> BS06396.3prime
ATGGTCTAGAAAGCTTCTAGACCTTCAGGTTGACGCCGGGATAGCCGGTG
GCGTTCAGTCCGGTCACCTTGTAGGTGGTGCCAGCTGGAGCGGGCTGATC
GAACTTGGCGGCAGTGGTCACGTACAGGATGTCCAAGTTGGGGCCACCGA
AGGCGGCGGAGGTAATCTGTTTGGTTGGGAACTTGATCTCAAGCAGAATC
TTGCCAGTGTTGGGATTAACCTTGTAGATGGTGGCGCCATTGAAGGTGGC
CACATACAGGTTGCCCTCGGTATCGATGGTCAGGCCATCGGGCAGCAGAT
GATCCTTGGGACTGTTCTTGCGCAGATTGAATATAACCTTGGGATTGCTA
GCCACGCCGGTCTCGAAATCATAGTCATACGACTTCACCTCGTAGTCGGT
GGTATCGATGTAGTAGAACTTCTTGGCCTTCTCGTCCCATGCCAGTCCAT
TGGAGATGCCCACATCGCCCTTGATCACCGACACCTGGCCACCGGCCTCC
CAGCGGTACAGCTCGCCGTGACGGAACTCGAACTCATCGCCAATGTAGCG
CATGGTGCCGCCAAAGAAGCGACCACGGGGATCAACCTTGGCGTCGTTCA
AACGATTCTTCTCCATCAGTGGCTGCACCTCGAACAGTGTGCGCACCACC
TTGGCGCTGGGCGAGACGCCATCCCAGTTGACGATCACCACGCGTCGACC
GCAGCCGACGGCGAACTCCTGCGGACGTCCCTCCACCGGCAGCACGAATC
CGGCCAAGGTTTCGCCCTCGATCTTCGTCTTGTAGACCTTGTTCTGGGCA
TAGTCGTAGCGGAGCAGGCTGCCCGCCTCCAAATCCACGTAGTACAGGCT
TTGCCTGGCCACATCCCAATGGGGACCCTCGCCCCAGGCGGCGTAGGAAT
CGGGCCATGGTTCCACCTTGTACGACATGTCGACTGATAAC
BS06396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1803-PA | 912 | regucalcin-RA | 45..912 | 884..17 | 4190 | 99.3 | Minus |
CG1803-PC | 912 | regucalcin-RC | 45..912 | 884..17 | 4190 | 99.3 | Minus |
CG1803-PB | 912 | regucalcin-RB | 45..912 | 884..17 | 4190 | 99.3 | Minus |
CG1803-PD | 960 | regucalcin-RD | 93..960 | 884..17 | 4190 | 99.3 | Minus |
CG1803-PA | 912 | regucalcin-RA | 1..40 | 928..889 | 175 | 97.5 | Minus |
CG1803-PC | 912 | regucalcin-RC | 1..40 | 928..889 | 175 | 97.5 | Minus |
CG1803-PB | 912 | regucalcin-RB | 1..40 | 928..889 | 175 | 97.5 | Minus |
CG1803-PD | 960 | regucalcin-RD | 49..88 | 928..889 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 1083 | CG1803-RD | 85..1001 | 928..12 | 4420 | 98.9 | Minus |
regucalcin-RB | 1458 | CG1803-RB | 143..1059 | 928..12 | 4420 | 98.9 | Minus |
regucalcin-RC | 1097 | CG1803-RC | 99..1015 | 928..12 | 4420 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12016003..12016721 | 928..210 | 3445 | 98.6 | Minus |
X | 23542271 | X | 12016779..12016976 | 209..12 | 975 | 99.5 | Minus |
3R | 32079331 | 3R | 14746410..14747125 | 213..928 | 415 | 70.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:12:30 has no hits.
BS06396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:45 Download gff for
BS06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PB | 1..912 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:28 Download gff for
BS06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PB | 1..912 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:01 Download gff for
BS06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..1015 | 12..928 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:23:49 Download gff for
BS06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..1015 | 12..928 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:23:49 Download gff for
BS06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12016779..12016976 | 12..209 | 99 | | Minus |
X | 12015997..12016721 | 210..936 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:01 Download gff for
BS06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11910030..11910754 | 210..936 | 98 | -> | Minus |
arm_X | 11910812..11911009 | 12..209 | 99 | | Minus |
BS06396.5prime Sequence
870 bp (719 high quality bases) assembled on 2005-12-03
> BS06396.5prime
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCAACTTGGACATCCTGTACGTGACCACTGCCGCCNAGTTCGATCAG
CCCGCTCCAGCTGGCACACC
BS06396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1803-PA | 912 | regucalcin-RA | 1..851 | 17..867 | 4086 | 99.1 | Plus |
CG1803-PC | 912 | regucalcin-RC | 1..851 | 17..867 | 4086 | 99.1 | Plus |
CG1803-PB | 912 | regucalcin-RB | 1..851 | 17..867 | 4086 | 99.1 | Plus |
CG1803-PD | 960 | regucalcin-RD | 49..899 | 17..867 | 4086 | 99.1 | Plus |
CG7390-PA | 912 | smp-30-RA | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG7390-PB | 912 | smp-30-RB | 25..68 | 41..84 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 1083 | CG1803-RD | 85..935 | 17..867 | 4154 | 99.2 | Plus |
regucalcin-RB | 1458 | CG1803-RB | 143..993 | 17..867 | 4154 | 99.2 | Plus |
regucalcin-RC | 1097 | CG1803-RC | 99..949 | 17..867 | 4154 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12016003..12016721 | 17..735 | 3505 | 99.2 | Plus |
X | 23542271 | X | 12016779..12016910 | 736..867 | 649 | 99.2 | Plus |
3R | 32079331 | 3R | 14746410..14747125 | 732..17 | 445 | 70.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:34:01 has no hits.
BS06396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:46 Download gff for
BS06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PC | 1..855 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:29 Download gff for
BS06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PD | 49..903 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:32 Download gff for
BS06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..953 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:32 Download gff for
BS06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..953 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:32 Download gff for
BS06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12015997..12016721 | 9..735 | 98 | -> | Plus |
X | 12016779..12016914 | 736..870 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:32 Download gff for
BS06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11910030..11910754 | 9..735 | 98 | -> | Plus |
arm_X | 11910812..11910947 | 736..870 | 98 | | Plus |
BS06396.complete Sequence
944 bp (944 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635474
> BS06396.complete
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCAACTTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAG
CCCGCTCCAGCTGGCACCACCTACAAGGTGACCGGACTGAACGCCACCGG
CTATCCCGGCGTCAACCTGAAGGTCTAGAAGCTTTCTAGACCAT
BS06396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 960 | CG1803-PD | 49..960 | 17..928 | 4470 | 99.3 | Plus |
regucalcin-RB | 912 | CG1803-PB | 1..912 | 17..928 | 4470 | 99.3 | Plus |
regucalcin-RC | 912 | CG1803-PC | 1..912 | 17..928 | 4470 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 1083 | CG1803-RD | 85..1001 | 17..933 | 4480 | 99.2 | Plus |
regucalcin-RB | 1458 | CG1803-RB | 143..1059 | 17..933 | 4480 | 99.2 | Plus |
regucalcin-RC | 1097 | CG1803-RC | 99..1015 | 17..933 | 4480 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12016003..12016721 | 17..735 | 3505 | 99.2 | Plus |
X | 23542271 | X | 12016779..12016976 | 736..933 | 975 | 99.5 | Plus |
3R | 32079331 | 3R | 14746410..14747125 | 732..17 | 445 | 70.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:14:09 has no hits.
BS06396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:36 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RB | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:00 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RB | 121..1037 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:09 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..1010 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:36 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RB | 121..1037 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:59 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..1010 | 17..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:59 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12016003..12016721 | 17..735 | 99 | -> | Plus |
X | 12016779..12016971 | 736..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:09 Download gff for
BS06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11910036..11910754 | 17..735 | 99 | -> | Plus |
arm_X | 11910812..11911004 | 736..928 | 100 | | Plus |
BS06396.pep Sequence
Translation from 16 to 927
> BS06396.pep
MSYKVEPLPDSYAGLGEGPHWDVARQSLYYVDLEAGSLLRYDYAQNKVYK
TKIEGETLAGFVLPVEGRPQEFAVGCGRRVVIVNWDGVSPSAKVVRTLFE
VQPLMEKNRLNDAKVDPRGRFFGGTMRYIGDEFEFRHGELYRWEAGGQVS
VIKGDVGISNGLAWDEKAKKFYYIDTTDYEVKSYDYDFETGVASNPKVIF
NLRKNSPKDHLLPDGLTIDTEGNLYVATFNGATIYKVNPNTGKILLEIKF
PTKQITSAAFGGPNLDILYVTTAAKFDQPAPAGTTYKVTGLNATGYPGVN
LKV*
BS06396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 1..303 | 1606 | 100 | Plus |
regucalcin-PC | 303 | CG1803-PC | 1..303 | 1..303 | 1606 | 100 | Plus |
regucalcin-PA | 303 | CG1803-PA | 1..303 | 1..303 | 1606 | 100 | Plus |
regucalcin-PD | 319 | CG1803-PD | 17..319 | 1..303 | 1606 | 100 | Plus |
smp-30-PD | 303 | CG7390-PD | 1..303 | 1..303 | 1173 | 71.9 | Plus |