Clone BS06396 Report

Search the DGRC for BS06396

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:63
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptregucalcin-RA
Protein status:BS06396.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06396.3prime Sequence

941 bp (846 high quality bases) assembled on 2005-12-03

> BS06396.3prime
ATGGTCTAGAAAGCTTCTAGACCTTCAGGTTGACGCCGGGATAGCCGGTG
GCGTTCAGTCCGGTCACCTTGTAGGTGGTGCCAGCTGGAGCGGGCTGATC
GAACTTGGCGGCAGTGGTCACGTACAGGATGTCCAAGTTGGGGCCACCGA
AGGCGGCGGAGGTAATCTGTTTGGTTGGGAACTTGATCTCAAGCAGAATC
TTGCCAGTGTTGGGATTAACCTTGTAGATGGTGGCGCCATTGAAGGTGGC
CACATACAGGTTGCCCTCGGTATCGATGGTCAGGCCATCGGGCAGCAGAT
GATCCTTGGGACTGTTCTTGCGCAGATTGAATATAACCTTGGGATTGCTA
GCCACGCCGGTCTCGAAATCATAGTCATACGACTTCACCTCGTAGTCGGT
GGTATCGATGTAGTAGAACTTCTTGGCCTTCTCGTCCCATGCCAGTCCAT
TGGAGATGCCCACATCGCCCTTGATCACCGACACCTGGCCACCGGCCTCC
CAGCGGTACAGCTCGCCGTGACGGAACTCGAACTCATCGCCAATGTAGCG
CATGGTGCCGCCAAAGAAGCGACCACGGGGATCAACCTTGGCGTCGTTCA
AACGATTCTTCTCCATCAGTGGCTGCACCTCGAACAGTGTGCGCACCACC
TTGGCGCTGGGCGAGACGCCATCCCAGTTGACGATCACCACGCGTCGACC
GCAGCCGACGGCGAACTCCTGCGGACGTCCCTCCACCGGCAGCACGAATC
CGGCCAAGGTTTCGCCCTCGATCTTCGTCTTGTAGACCTTGTTCTGGGCA
TAGTCGTAGCGGAGCAGGCTGCCCGCCTCCAAATCCACGTAGTACAGGCT
TTGCCTGGCCACATCCCAATGGGGACCCTCGCCCCAGGCGGCGTAGGAAT
CGGGCCATGGTTCCACCTTGTACGACATGTCGACTGATAAC

BS06396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1803-PA 912 regucalcin-RA 45..912 884..17 4190 99.3 Minus
CG1803-PC 912 regucalcin-RC 45..912 884..17 4190 99.3 Minus
CG1803-PB 912 regucalcin-RB 45..912 884..17 4190 99.3 Minus
CG1803-PD 960 regucalcin-RD 93..960 884..17 4190 99.3 Minus
CG1803-PA 912 regucalcin-RA 1..40 928..889 175 97.5 Minus
CG1803-PC 912 regucalcin-RC 1..40 928..889 175 97.5 Minus
CG1803-PB 912 regucalcin-RB 1..40 928..889 175 97.5 Minus
CG1803-PD 960 regucalcin-RD 49..88 928..889 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 1083 CG1803-RD 85..1001 928..12 4420 98.9 Minus
regucalcin-RB 1458 CG1803-RB 143..1059 928..12 4420 98.9 Minus
regucalcin-RC 1097 CG1803-RC 99..1015 928..12 4420 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12016003..12016721 928..210 3445 98.6 Minus
X 23542271 X 12016779..12016976 209..12 975 99.5 Minus
3R 32079331 3R 14746410..14747125 213..928 415 70.5 Plus
Blast to na_te.dros performed on 2015-02-11 17:12:30 has no hits.

BS06396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:45 Download gff for BS06396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PB 1..912 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:28 Download gff for BS06396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PB 1..912 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:01 Download gff for BS06396.3prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..1015 12..928 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:23:49 Download gff for BS06396.3prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..1015 12..928 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:23:49 Download gff for BS06396.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12016779..12016976 12..209 99   Minus
X 12015997..12016721 210..936 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:01 Download gff for BS06396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11910030..11910754 210..936 98 -> Minus
arm_X 11910812..11911009 12..209 99   Minus

BS06396.5prime Sequence

870 bp (719 high quality bases) assembled on 2005-12-03

> BS06396.5prime
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCAACTTGGACATCCTGTACGTGACCACTGCCGCCNAGTTCGATCAG
CCCGCTCCAGCTGGCACACC

BS06396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1803-PA 912 regucalcin-RA 1..851 17..867 4086 99.1 Plus
CG1803-PC 912 regucalcin-RC 1..851 17..867 4086 99.1 Plus
CG1803-PB 912 regucalcin-RB 1..851 17..867 4086 99.1 Plus
CG1803-PD 960 regucalcin-RD 49..899 17..867 4086 99.1 Plus
CG7390-PA 912 smp-30-RA 25..68 41..84 145 93.1 Plus
CG7390-PB 912 smp-30-RB 25..68 41..84 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 1083 CG1803-RD 85..935 17..867 4154 99.2 Plus
regucalcin-RB 1458 CG1803-RB 143..993 17..867 4154 99.2 Plus
regucalcin-RC 1097 CG1803-RC 99..949 17..867 4154 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12016003..12016721 17..735 3505 99.2 Plus
X 23542271 X 12016779..12016910 736..867 649 99.2 Plus
3R 32079331 3R 14746410..14747125 732..17 445 70.8 Minus
Blast to na_te.dros performed on 2015-02-13 08:34:01 has no hits.

BS06396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:46 Download gff for BS06396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PC 1..855 17..870 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:29 Download gff for BS06396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PD 49..903 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:32 Download gff for BS06396.5prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..953 17..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:32 Download gff for BS06396.5prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..953 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:32 Download gff for BS06396.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12015997..12016721 9..735 98 -> Plus
X 12016779..12016914 736..870 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:32 Download gff for BS06396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11910030..11910754 9..735 98 -> Plus
arm_X 11910812..11910947 736..870 98   Plus

BS06396.complete Sequence

944 bp (944 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635474

> BS06396.complete
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCAACTTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAG
CCCGCTCCAGCTGGCACCACCTACAAGGTGACCGGACTGAACGCCACCGG
CTATCCCGGCGTCAACCTGAAGGTCTAGAAGCTTTCTAGACCAT

BS06396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 960 CG1803-PD 49..960 17..928 4470 99.3 Plus
regucalcin-RB 912 CG1803-PB 1..912 17..928 4470 99.3 Plus
regucalcin-RC 912 CG1803-PC 1..912 17..928 4470 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 1083 CG1803-RD 85..1001 17..933 4480 99.2 Plus
regucalcin-RB 1458 CG1803-RB 143..1059 17..933 4480 99.2 Plus
regucalcin-RC 1097 CG1803-RC 99..1015 17..933 4480 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12016003..12016721 17..735 3505 99.2 Plus
X 23542271 X 12016779..12016976 736..933 975 99.5 Plus
3R 32079331 3R 14746410..14747125 732..17 445 70.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:14:09 has no hits.

BS06396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:36 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RB 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:00 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RB 121..1037 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:09 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..1010 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:36 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RB 121..1037 17..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:59 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..1010 17..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:59 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
X 12016003..12016721 17..735 99 -> Plus
X 12016779..12016971 736..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:09 Download gff for BS06396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11910036..11910754 17..735 99 -> Plus
arm_X 11910812..11911004 736..928 100   Plus

BS06396.pep Sequence

Translation from 16 to 927

> BS06396.pep
MSYKVEPLPDSYAGLGEGPHWDVARQSLYYVDLEAGSLLRYDYAQNKVYK
TKIEGETLAGFVLPVEGRPQEFAVGCGRRVVIVNWDGVSPSAKVVRTLFE
VQPLMEKNRLNDAKVDPRGRFFGGTMRYIGDEFEFRHGELYRWEAGGQVS
VIKGDVGISNGLAWDEKAKKFYYIDTTDYEVKSYDYDFETGVASNPKVIF
NLRKNSPKDHLLPDGLTIDTEGNLYVATFNGATIYKVNPNTGKILLEIKF
PTKQITSAAFGGPNLDILYVTTAAKFDQPAPAGTTYKVTGLNATGYPGVN
LKV*

BS06396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-PB 303 CG1803-PB 1..303 1..303 1606 100 Plus
regucalcin-PC 303 CG1803-PC 1..303 1..303 1606 100 Plus
regucalcin-PA 303 CG1803-PA 1..303 1..303 1606 100 Plus
regucalcin-PD 319 CG1803-PD 17..319 1..303 1606 100 Plus
smp-30-PD 303 CG7390-PD 1..303 1..303 1173 71.9 Plus