Clone BS06401 Report

Search the DGRC for BS06401

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRhoL-RA
Protein status:BS06401.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06401.3prime Sequence

603 bp (602 high quality bases) assembled on 2005-12-03

> BS06401.3prime
ATGGTCTAGAAAGCTTTCACAGTATTTTGCACGATTGCTTGGACGTCGTC
TTTGGTTTCCTCTCCACGGCTCTAACCGCCTCCTCGAAGACCTGCTGCAG
GTTCTGCTTCTTCTTGGCGGAGCACTCGACCAAGTTGAATGCGTGTATCT
CTTTGCGCATCTTTTTTCCCTCCTGTGTGGTCACGAACTTCTCCGAGTTG
GGAATGCGCAAGTCCAGTTTGGTGCCCACGAGAACCACGGGAACGTGGGC
GGAGAAGTGACGGATCTCCGGCCACCACTTGCTTTTCACGTTTTCGAATG
AGGTCCTACTGCTGATCGAATAGCACAACAGGAAGCAGTTGGTACTGGGA
TAGCTCAGGGGGCGCAGCCTTTCGTAATCCTCCTGGCCGGCAGTGTCCCA
GAGGGTCAGATTGTAGTCCCGATCATCTACGGCTATGTTGCAGGCGTGAT
TGTCGAACACTGTGGGTATGTACTCCTCGGGGAACTCGTTCCGTGTGTAG
GTTATCAGCATGCAGGTTTTGCCCACCATGCCATCGCCCACGATGGTTAT
TTTCAGCGGGCGCGGACTCTTCGTTATGTTCGCCGTCATGTCGACTGATA
ACT

BS06401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9366-PA 573 RhoL-RA 1..573 589..17 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 317..890 589..16 2870 100 Minus
RhoL-RA 1041 CG9366-RA 247..820 589..16 2870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498125 344..589 1230 100 Plus
3R 32079331 3R 9497631..9497802 172..343 860 100 Plus
3R 32079331 3R 9497416..9497575 16..175 800 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:59:52 has no hits.

BS06401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:47 Download gff for BS06401.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-PA 1..573 17..589 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:31 Download gff for BS06401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9366-PA 1..573 17..589 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:14 Download gff for BS06401.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 12..592 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:31 Download gff for BS06401.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 12..592 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:31 Download gff for BS06401.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9497880..9498127 344..592 99   Plus
3R 9497414..9497572 12..172 98 <- Plus
3R 9497632..9497802 173..343 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:14 Download gff for BS06401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323136..5323294 12..172 98 <- Plus
arm_3R 5323354..5323524 173..343 100 <- Plus
arm_3R 5323602..5323849 344..592 99   Plus

BS06401.5prime Sequence

603 bp (602 high quality bases) assembled on 2005-12-03

> BS06401.5prime
GAAGTTATCAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGTGAAAGCTTTCTAG
ACC

BS06401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9366-PA 573 RhoL-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 317..890 17..590 2870 100 Plus
RhoL-RA 1041 CG9366-RA 247..820 17..590 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498125 262..17 1230 100 Minus
3R 32079331 3R 9497631..9497802 434..263 860 100 Minus
3R 32079331 3R 9497416..9497575 590..431 800 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:04:13 has no hits.

BS06401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:49 Download gff for BS06401.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-PA 1..573 17..589 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:32 Download gff for BS06401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9366-PA 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:08 Download gff for BS06401.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 14..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:44 Download gff for BS06401.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 14..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:44 Download gff for BS06401.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9497414..9497572 434..594 98 <- Minus
3R 9497632..9497802 263..433 100 <- Minus
3R 9497880..9498127 14..262 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:08 Download gff for BS06401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323136..5323294 434..594 98 <- Minus
arm_3R 5323354..5323524 263..433 100 <- Minus
arm_3R 5323602..5323849 14..262 99   Minus

BS06401.complete Sequence

605 bp (605 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635475

> BS06401.complete
GAAGTTATCAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGTGAAAGCTTTCTAG
ACCAT

BS06401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 645 CG9366-PB 73..645 17..589 2865 100 Plus
RhoL-RA 573 CG9366-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 317..890 17..590 2870 100 Plus
RhoL-RA 1041 CG9366-RA 247..820 17..590 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498125 262..17 1230 100 Minus
3R 32079331 3R 9497631..9497802 434..263 860 100 Minus
3R 32079331 3R 9497416..9497575 590..431 800 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:45:40 has no hits.

BS06401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:37 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:01 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 241..818 14..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:13 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 247..818 17..588 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:37 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 241..818 14..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:41 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 247..818 17..588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:41 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497880..9498125 17..262 100   Minus
3R 9497418..9497572 434..588 100 <- Minus
3R 9497632..9497802 263..433 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:13 Download gff for BS06401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323140..5323294 434..588 100 <- Minus
arm_3R 5323354..5323524 263..433 100 <- Minus
arm_3R 5323602..5323847 17..262 100   Minus

BS06401.pep Sequence

Translation from 16 to 588

> BS06401.pep
MTANITKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHAC
NIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFEN
VKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKFVTTQEGKKMRKEIHA
FNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQSCKIL*

BS06401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PA 190 CG9366-PA 1..190 1..190 1007 100 Plus
RhoL-PB 214 CG9366-PB 25..214 1..190 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 12..190 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 12..190 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 12..190 516 51.6 Plus