Clone Sequence Records
BS06402.3prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS06402.3prime
ATGGTCTAGAAAGCTTTCAGCTTTTCAATGGGCCTTTATTAATTGAAACA
TATTTAAGGCTATCACAGTGTATCTTATACTCCAATGCCGTTGTTAGAGG
TATATTTAATATCCTGCGTAACGTATCACGGATACGTGTTGTACTGGTCA
TATCAGTGGCAGTCCGGTGCCATACTGATAAGCTATCCTCCGGATATTTC
GTCTGTAGCACGACTCCGCATATCTCGTCGCCGACGAGGAACTGCTCCCC
GAGCATCGCCATACAAACGTTCTCCCAGGCCCGGTCGACCTTGTTCTTGC
GCAGTCGTATCAACCACTGGCCGCCCTTGCTGTTCGCCGGGTCCTCCCAC
ATCGGTATGATGCCCTGCTTGAAGAGGAGGAGCTCCCGGTAGGGCTTCAG
GGCGGTGGGCCGGATGAGGTGCGAGTAGAGCGACCACCACTGCTGCACGC
TGGCGCACCGGCCGACCATGTGCAGCGACTTGCTGTAGTCGGCGGCCGCC
CGCTGCGTCTCCTTGCGAGAGAACCAGAGGCAGTATGTGTGCTGCAGCCG
GTTCTCGCCGGGTCCCACCTCCAGTGGTGGCAGGTTGTCCACATCTATCT
GATTATCCACATCGCTGTCGTCGCTGTCGACAATATCTGGCCAGTTTTTC
GTCTCGTACTGCTTGTTGGCTACTTTCTCCATGCTCATGTCGACTGATAA
CT
BS06402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33100-PA | 672 | 4EHP-RA | 1..672 | 688..17 | 3285 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 1855 | CG33100-RA | 454..1127 | 688..15 | 3325 | 99.6 | Minus |
4EHP-RD | 1324 | CG33100-RD | 454..1100 | 688..42 | 3190 | 99.5 | Minus |
4EHP-RC | 4539 | CG33100-RC | 454..951 | 688..191 | 2445 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106824..24107284 | 190..650 | 2260 | 99.3 | Plus |
3R | 32079331 | 3R | 24064182..24064331 | 42..191 | 750 | 100 | Plus |
3R | 32079331 | 3R | 24108469..24108507 | 650..688 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:46:40 has no hits.
BS06402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:50 Download gff for
BS06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-PA | 1..672 | 17..688 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:34 Download gff for
BS06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33100-PA | 1..672 | 17..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:53 Download gff for
BS06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1132 | 6..696 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:02 Download gff for
BS06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1132 | 6..696 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:02 Download gff for
BS06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24064182..24064330 | 42..190 | 100 | <- | Plus |
3R | 24106825..24107284 | 191..650 | 99 | <- | Plus |
3R | 24108470..24108511 | 651..696 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:53 Download gff for
BS06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19889904..19890052 | 42..190 | 100 | <- | Plus |
arm_3R | 19932547..19933006 | 191..650 | 99 | <- | Plus |
arm_3R | 19934192..19934233 | 651..696 | 91 | | Plus |
BS06402.5prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS06402.5prime
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGGGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTGCGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACT
GATATGACCAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAA
TATACCTCTAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTA
AATATGTTTCAATTAATAAAGGCCCATTGAAAAGCTGAAAGCTTTCTAGA
CC
BS06402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33100-PA | 672 | 4EHP-RA | 1..672 | 17..688 | 3285 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 1855 | CG33100-RA | 454..1127 | 17..690 | 3325 | 99.6 | Plus |
4EHP-RD | 1324 | CG33100-RD | 454..1100 | 17..663 | 3190 | 99.5 | Plus |
4EHP-RC | 4539 | CG33100-RC | 454..951 | 17..514 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106824..24107284 | 515..55 | 2260 | 99.3 | Minus |
3R | 32079331 | 3R | 24064182..24064331 | 663..514 | 750 | 100 | Minus |
3R | 32079331 | 3R | 24108469..24108507 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:25:26 has no hits.
BS06402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:51 Download gff for
BS06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-PA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:36 Download gff for
BS06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33100-PA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:53 Download gff for
BS06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1132 | 9..699 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:41 Download gff for
BS06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1132 | 9..699 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:41 Download gff for
BS06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24064182..24064330 | 515..663 | 100 | <- | Minus |
3R | 24106825..24107284 | 55..514 | 99 | <- | Minus |
3R | 24108470..24108511 | 9..54 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:53 Download gff for
BS06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19889904..19890052 | 515..663 | 100 | <- | Minus |
arm_3R | 19932547..19933006 | 55..514 | 99 | <- | Minus |
arm_3R | 19934192..19934233 | 9..54 | 91 | | Minus |
BS06402.complete Sequence
704 bp (704 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635476
> BS06402.complete
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGGGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTGCGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACT
GATATGACCAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAA
TATACCTCTAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTA
AATATGTTTCAATTAATAAAGGCCCATTGAAAAGCTGAAAGCTTTCTAGA
CCAT
BS06402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 672 | CG33100-PA | 1..672 | 17..688 | 3315 | 99.6 | Plus |
4EHP-RD | 729 | CG33100-PD | 1..647 | 17..663 | 3190 | 99.5 | Plus |
4EHP-RC | 561 | CG33100-PC | 1..498 | 17..514 | 2445 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 1855 | CG33100-RA | 454..1127 | 17..690 | 3325 | 99.6 | Plus |
4EHP-RD | 1324 | CG33100-RD | 454..1100 | 17..663 | 3190 | 99.5 | Plus |
4EHP-RC | 4539 | CG33100-RC | 454..951 | 17..514 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106824..24107284 | 515..55 | 2260 | 99.3 | Minus |
3R | 32079331 | 3R | 24064182..24064331 | 663..514 | 750 | 100 | Minus |
3R | 32079331 | 3R | 24108469..24108507 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:43:05 has no hits.
BS06402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:38 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:53 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 443..1113 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:43 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 454..1124 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:38 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 439..1121 | 9..699 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:49 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 454..1124 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:49 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24063808..24063831 | 664..687 | 100 | <- | Minus |
3R | 24064182..24064330 | 515..663 | 100 | <- | Minus |
3R | 24106825..24107284 | 55..514 | 99 | <- | Minus |
3R | 24108470..24108507 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:43 Download gff for
BS06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19889904..19890052 | 515..663 | 100 | <- | Minus |
arm_3R | 19889530..19889553 | 664..687 | 100 | <- | Minus |
arm_3R | 19932547..19933006 | 55..514 | 99 | <- | Minus |
arm_3R | 19934192..19934229 | 17..54 | 100 | | Minus |
BS06402.pep Sequence
Translation from 16 to 687
> BS06402.pep
MSMEKVANKQYETKNWPDIVDSDDSDVDNQIDVDNLPPLEVGPGENRLQH
TYCLWFSRKETQRAAADYSKSLHMVGRCASVQQWWSLYSHLIRPTALKPY
RELLLFKQGIIPMWEDPANSKGGQWLIRLRKNKVDRAWENVCMAMLGEQF
LVGDEICGVVLQTKYPEDSLSVWHRTATDMTSTTRIRDTLRRILNIPLTT
ALEYKIHCDSLKYVSINKGPLKS*
BS06402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-PA | 223 | CG33100-PA | 1..223 | 1..223 | 1199 | 100 | Plus |
4EHP-PD | 242 | CG33100-PD | 1..216 | 1..216 | 1159 | 99.5 | Plus |
4EHP-PB | 248 | CG33100-PB | 1..172 | 1..172 | 914 | 97.7 | Plus |
4EHP-PC | 186 | CG33100-PC | 1..166 | 1..166 | 905 | 100 | Plus |
eIF4E-7-PA | 429 | CG32859-PA | 231..415 | 26..210 | 284 | 31.9 | Plus |