Clone BS06402 Report

Search the DGRC for BS06402

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:2
Vector:pDNR-Dual
Associated Gene/Transcript4EHP-RA
Protein status:BS06402.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06402.3prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-03

> BS06402.3prime
ATGGTCTAGAAAGCTTTCAGCTTTTCAATGGGCCTTTATTAATTGAAACA
TATTTAAGGCTATCACAGTGTATCTTATACTCCAATGCCGTTGTTAGAGG
TATATTTAATATCCTGCGTAACGTATCACGGATACGTGTTGTACTGGTCA
TATCAGTGGCAGTCCGGTGCCATACTGATAAGCTATCCTCCGGATATTTC
GTCTGTAGCACGACTCCGCATATCTCGTCGCCGACGAGGAACTGCTCCCC
GAGCATCGCCATACAAACGTTCTCCCAGGCCCGGTCGACCTTGTTCTTGC
GCAGTCGTATCAACCACTGGCCGCCCTTGCTGTTCGCCGGGTCCTCCCAC
ATCGGTATGATGCCCTGCTTGAAGAGGAGGAGCTCCCGGTAGGGCTTCAG
GGCGGTGGGCCGGATGAGGTGCGAGTAGAGCGACCACCACTGCTGCACGC
TGGCGCACCGGCCGACCATGTGCAGCGACTTGCTGTAGTCGGCGGCCGCC
CGCTGCGTCTCCTTGCGAGAGAACCAGAGGCAGTATGTGTGCTGCAGCCG
GTTCTCGCCGGGTCCCACCTCCAGTGGTGGCAGGTTGTCCACATCTATCT
GATTATCCACATCGCTGTCGTCGCTGTCGACAATATCTGGCCAGTTTTTC
GTCTCGTACTGCTTGTTGGCTACTTTCTCCATGCTCATGTCGACTGATAA
CT

BS06402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG33100-PA 672 4EHP-RA 1..672 688..17 3285 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
4EHP-RA 1855 CG33100-RA 454..1127 688..15 3325 99.6 Minus
4EHP-RD 1324 CG33100-RD 454..1100 688..42 3190 99.5 Minus
4EHP-RC 4539 CG33100-RC 454..951 688..191 2445 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24106824..24107284 190..650 2260 99.3 Plus
3R 32079331 3R 24064182..24064331 42..191 750 100 Plus
3R 32079331 3R 24108469..24108507 650..688 195 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:46:40 has no hits.

BS06402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:50 Download gff for BS06402.3prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-PA 1..672 17..688 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:34 Download gff for BS06402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33100-PA 1..672 17..688 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:53 Download gff for BS06402.3prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 450..1132 6..696 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:02 Download gff for BS06402.3prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 450..1132 6..696 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:02 Download gff for BS06402.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24064182..24064330 42..190 100 <- Plus
3R 24106825..24107284 191..650 99 <- Plus
3R 24108470..24108511 651..696 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:53 Download gff for BS06402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19889904..19890052 42..190 100 <- Plus
arm_3R 19932547..19933006 191..650 99 <- Plus
arm_3R 19934192..19934233 651..696 91   Plus

BS06402.5prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-03

> BS06402.5prime
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGGGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTGCGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACT
GATATGACCAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAA
TATACCTCTAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTA
AATATGTTTCAATTAATAAAGGCCCATTGAAAAGCTGAAAGCTTTCTAGA
CC

BS06402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG33100-PA 672 4EHP-RA 1..672 17..688 3285 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
4EHP-RA 1855 CG33100-RA 454..1127 17..690 3325 99.6 Plus
4EHP-RD 1324 CG33100-RD 454..1100 17..663 3190 99.5 Plus
4EHP-RC 4539 CG33100-RC 454..951 17..514 2445 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24106824..24107284 515..55 2260 99.3 Minus
3R 32079331 3R 24064182..24064331 663..514 750 100 Minus
3R 32079331 3R 24108469..24108507 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:25:26 has no hits.

BS06402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:51 Download gff for BS06402.5prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-PA 1..672 17..688 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:36 Download gff for BS06402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33100-PA 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:53 Download gff for BS06402.5prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 450..1132 9..699 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:41 Download gff for BS06402.5prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 450..1132 9..699 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:41 Download gff for BS06402.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24064182..24064330 515..663 100 <- Minus
3R 24106825..24107284 55..514 99 <- Minus
3R 24108470..24108511 9..54 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:53 Download gff for BS06402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19889904..19890052 515..663 100 <- Minus
arm_3R 19932547..19933006 55..514 99 <- Minus
arm_3R 19934192..19934233 9..54 91   Minus

BS06402.complete Sequence

704 bp (704 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635476

> BS06402.complete
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGGGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTGCGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACT
GATATGACCAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAA
TATACCTCTAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTA
AATATGTTTCAATTAATAAAGGCCCATTGAAAAGCTGAAAGCTTTCTAGA
CCAT

BS06402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
4EHP-RA 672 CG33100-PA 1..672 17..688 3315 99.6 Plus
4EHP-RD 729 CG33100-PD 1..647 17..663 3190 99.5 Plus
4EHP-RC 561 CG33100-PC 1..498 17..514 2445 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
4EHP-RA 1855 CG33100-RA 454..1127 17..690 3325 99.6 Plus
4EHP-RD 1324 CG33100-RD 454..1100 17..663 3190 99.5 Plus
4EHP-RC 4539 CG33100-RC 454..951 17..514 2445 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24106824..24107284 515..55 2260 99.3 Minus
3R 32079331 3R 24064182..24064331 663..514 750 100 Minus
3R 32079331 3R 24108469..24108507 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:43:05 has no hits.

BS06402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:38 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:53 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 443..1113 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:43 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 454..1124 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:38 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 439..1121 9..699 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:49 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 454..1124 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:49 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24063808..24063831 664..687 100 <- Minus
3R 24064182..24064330 515..663 100 <- Minus
3R 24106825..24107284 55..514 99 <- Minus
3R 24108470..24108507 17..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:43 Download gff for BS06402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19889904..19890052 515..663 100 <- Minus
arm_3R 19889530..19889553 664..687 100 <- Minus
arm_3R 19932547..19933006 55..514 99 <- Minus
arm_3R 19934192..19934229 17..54 100   Minus

BS06402.pep Sequence

Translation from 16 to 687

> BS06402.pep
MSMEKVANKQYETKNWPDIVDSDDSDVDNQIDVDNLPPLEVGPGENRLQH
TYCLWFSRKETQRAAADYSKSLHMVGRCASVQQWWSLYSHLIRPTALKPY
RELLLFKQGIIPMWEDPANSKGGQWLIRLRKNKVDRAWENVCMAMLGEQF
LVGDEICGVVLQTKYPEDSLSVWHRTATDMTSTTRIRDTLRRILNIPLTT
ALEYKIHCDSLKYVSINKGPLKS*

BS06402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
4EHP-PA 223 CG33100-PA 1..223 1..223 1199 100 Plus
4EHP-PD 242 CG33100-PD 1..216 1..216 1159 99.5 Plus
4EHP-PB 248 CG33100-PB 1..172 1..172 914 97.7 Plus
4EHP-PC 186 CG33100-PC 1..166 1..166 905 100 Plus
eIF4E-7-PA 429 CG32859-PA 231..415 26..210 284 31.9 Plus